Dpar001093.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
RTase
Assembly
GCA_958336345.1
Location
OY284475.1:8383451-8403413[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 47 0.018 1.7 10.7 1.3 1 23 10 32 10 32 0.98
2 47 0.014 1.3 11.0 3.9 1 23 38 60 38 60 0.97
3 47 0.039 3.6 9.7 2.0 3 23 68 88 66 88 0.97
4 47 0.0096 0.88 11.6 3.4 1 23 94 116 94 116 0.98
5 47 0.0027 0.24 13.3 1.8 1 23 122 144 122 144 0.99
6 47 0.16 15 7.7 6.9 1 23 203 225 203 225 0.99
7 47 0.00016 0.015 17.1 2.0 1 23 231 253 231 253 0.97
8 47 0.0007 0.064 15.2 3.5 1 23 259 281 259 281 0.98
9 47 0.018 1.7 10.7 2.6 3 23 289 309 287 309 0.98
10 47 0.028 2.6 10.1 1.0 1 23 315 337 315 337 0.97
11 47 0.022 2 10.4 4.5 2 23 344 365 343 365 0.97
12 47 0.0046 0.42 12.6 0.7 1 23 371 393 371 393 0.98
13 47 0.032 3 9.9 3.8 1 23 449 471 449 471 0.99
14 47 7.4e-05 0.0068 18.2 2.9 1 23 477 499 477 499 0.98
15 47 0.13 12 8.0 6.4 1 23 505 527 505 527 0.98
16 47 0.011 0.99 11.4 3.9 1 23 542 564 542 564 0.97
17 47 0.00014 0.013 17.4 1.1 1 23 570 592 570 592 0.98
18 47 0.001 0.092 14.7 0.8 1 23 598 620 598 620 0.98
19 47 3.2 2.9e+02 3.6 0.3 3 23 628 648 626 648 0.96
20 47 0.0054 0.5 12.4 2.4 2 23 655 676 654 677 0.94
21 47 0.6 55 5.9 3.6 1 23 682 704 682 704 0.98
22 47 0.0029 0.27 13.2 1.4 1 23 710 732 710 732 0.99
23 47 0.0068 0.63 12.0 4.5 1 23 781 803 781 803 0.98
24 47 3 2.8e+02 3.7 0.6 1 23 809 829 809 829 0.84
25 47 0.0087 0.8 11.7 0.8 1 23 835 857 835 857 0.98
26 47 0.13 12 8.0 7.0 1 23 863 885 863 885 0.97
27 47 0.0039 0.36 12.8 3.6 1 23 891 913 891 913 0.97
28 47 0.0028 0.26 13.3 3.2 2 23 920 941 919 941 0.97
29 47 0.0009 0.083 14.8 0.6 1 23 947 969 947 969 0.99
30 47 0.00063 0.058 15.3 1.2 1 23 975 997 975 997 0.99
31 47 0.019 1.8 10.6 1.7 1 23 1044 1066 1044 1066 0.98
32 47 0.00041 0.038 15.9 4.1 1 23 1072 1094 1072 1094 0.97
33 47 0.0016 0.14 14.1 4.6 1 23 1100 1122 1100 1122 0.98
34 47 0.0013 0.12 14.3 2.2 3 23 1130 1150 1128 1150 0.97
35 47 0.058 5.4 9.1 0.9 1 23 1156 1178 1156 1178 0.96
36 47 0.012 1.1 11.3 2.7 2 23 1185 1206 1184 1206 0.97
37 47 0.16 15 7.7 4.2 1 23 1212 1234 1212 1234 0.98
38 47 0.00063 0.058 15.3 1.2 1 23 1240 1262 1240 1262 0.99
39 47 0.059 5.5 9.1 2.3 1 23 1305 1327 1305 1327 0.98
40 47 0.019 1.8 10.6 5.8 1 23 1333 1355 1333 1355 0.97
41 47 0.0031 0.29 13.1 4.4 1 23 1361 1383 1361 1383 0.98
42 47 0.0016 0.15 14.0 1.2 3 23 1391 1411 1389 1411 0.97
43 47 0.013 1.2 11.2 1.3 1 23 1417 1439 1417 1439 0.98
44 47 0.0034 0.32 13.0 4.4 2 23 1446 1467 1445 1467 0.97
45 47 0.013 1.2 11.2 3.9 1 23 1473 1495 1473 1495 0.98
46 47 0.00027 0.025 16.4 3.8 1 23 1578 1600 1578 1600 0.97
47 47 0.00028 0.026 16.4 2.1 1 23 1606 1628 1606 1628 0.98

Sequence Information

Coding Sequence
atgttaaCACACAGCGACGAAAAGCCGTTCGTCTGCGACCGTTGCGGTTACGAATGCCGCACGGCTTCAATTTTGAAAGGGCACATGCAAAAACACGTCAGCGAGAAGCAGTTCAGCTGTGATCTGTGCGCTCAAAAATTTCAACATTCTGCTAATTTGAGAAGGCACAAATTCACACACTCCGACGAGAAGCGGTTCGGTTGTGAATTTTGCGATTATAGATGTCAACGTCTAGAATACCTGAGACGCCACTTGCTAGTACATaacggtgagaagccgttcaaaTGTGCCCTGTGCGATCATAAATGCGCACAACTTGCAAAGTTGAAACAGCACATGTTGATGCACTCCGGTGAGAGGCAATTCAAATGCCACCTTTGCAGTTATGAAGGCAATCGGCAGGCAAATTTAAGGTTACACTTATTGACGCACACCGAAGAGACGCCGTTTAAGTGCGGGGTTTGTGAATTCGCAAGCAAAACAGCCAGATGCCCGAAACCTACAATTCCGGACGGAAGGGCAACTGAGTACGGCCAAAGTGGTTCTGATTTTAAACTTCCCGAGTATAAACCCAAATACGTACTGTTAGATAACGGCAAGAGACTGTACACTTGCGATCTTTGCGGTTATAAATGCCACAAAGTGAGTAGCATAAAACATCACATGAGGATCCATTCCAACCGGAAACCTTTCGCTTGTGAgatttgcaattataaatgcaGATTCgccggaaatttgaaacagcacatgttgacgcacaccggcgaaaagcaCTTCGTCTGCGACCGTTGCGGTCACAAATGCCGCACGAAAGCAGCTTTGAAGTGGCACATGGAGAAACACATCGGCAAGAAAGTGTTCGGTTGTGACCTGTGCGATCAAAAATTTCAACATTCTACGAATTTGGGAAGGCACAAGTTAACGCACactggcgagaagccgttcagttgtgaatTTTGCGATTACAGAGGTCGACGGTTAGATTTACTGAGAAGCCACTCGTTAACACATAACGGCCAGAAACAGATCAAATGTGccctttgcgattttaaatgcgcAAGACATATGTATCTGAAAAGGCACATGTTAACGCATACAGGCGAGAAACACTATAAATGCCAGATTTGCAGTTACGAAACCAGTCAGGTTGGAAATTTAAGGGCGCACTtcttaaagcacaccgacgagaggTCGTTTAAGTGCGAACGTTGCGAGTACGTAAGCAAATCGGCAAGataCTCAGGATTTTCTGAAATTACAACCTCGGAATTAAAGACACGTATTAAACGTGATCCTCTTGAACGCACGCCCAAACACATAGTATTAGCCAATGGCGTGAGGCTGTTCACTTGCGacttttgcgattacaaatgcaaaCCAATCAGTAGCATAAAGCAACACATGAAGACCCATTCCAAAAAGGAGCCTTTCGTCTGCAAGATATGCAACTACAAATGCCGATTCGCTGGAAACTTGAAAAGACATATATTAACACACATCGGCAAAAAGCGGCACACCTGCGAGCATTGCGGTTACAAATGCAGAGAAGGCGTGCGATTGAAACAACATATACGAACGCACACCTGCGAGAAACCGGAACCGAAACACACGAACGAAAAGCGGTTCTTCTGTGATTATTGCAATTACCGATGCCGAGGAGGTGCCAGCTTGAAGCAACATATGcgaaaacacaccggcgagaaaccgtttaGTTGCGATCAGTGCGCTCAGAAGTTTCAACAACTCGGAAATTTGAAGAggcacatgttaacgcacaccgGCCAGAAACCGTTTAGTTGTTATCTGTGCGCTCAAAGGTTTCAGCAGCTTGGAAATTTGAAAAggcacatgttaatacacactggcgagaagccgttcggttgtgactTTTGCGATTACAAGGGTCGAAGTTTGGCAGATGTGAAACAACACAAGCTAATTCATAGTAGTGAAAAACCGCTCCAGTGTGCCGTTTGTGATTATAGGTGCGCACTGCCTAAGCAATTGAGACGGCACTTGCTAACGCACCACGGGGACAAACACTACAAGTGCTACCTTTGCAGTTACGAATGCAATCAGGCAGGGAAATTAAGGTTACACTTTTTAAAGCATAGCGATGAGCGGCCATTTAAGTGCGAACTCTGTGAATACGTGGGTAAAACGGCCAGACATTTACAGGAACACAAGCGAGTGCATTCGGATGAAAAGCCGTTCAAGTGCGACCTTTGCGAGTGCTCTGGAATTTCTAAATCTACAATTTCGGACATACGGAGACCTGAACGTGCTACTGCTCAGTATATACCCGAATTTAATCTCCTGTTATCTAACGGCATGAGGCTCTTCATTTgcaatctttgcgattataaatgccaacGAAAGGACAGCATGAGACGACACGTTAAGACCCATTCCGACGAGAAACCTTTCGTCTGTGAGATCTGCAACTATAGATCCCGAGTTCCATTAAAAcagcacatgttaaaacacGCTGGCGAAAAGCAGTTCGTTTGCGATCGTTGCGGTTTCAGTTGCTTCGAGATTGGAGCTTTGAATAACCACATCCGAACACACAGCGGCGAGAAACTGTTTAGTTGTGACCTGTGCACTAAAAAGTTTCAACATCTGAGACATATGAGAAGGCACAAGTTAATACATACCGACGAGAAGCGGTTCACGTGTGAAGTTTGCGATTACAGATGTCAACGTTCAGAAGATCTGAAACGTCACGTGTTCAAACATAGCGGTGAAAAATCGATCAAATGTGCCCTTTGCGACTTTAAGTGCGCACGACGTACCTATCTAAAGAAGCACATGTTAACGCATACCGGTGAAAAACGCTTCAAATGCCAACTTTGCAGTTACGAATCCAGTCAGGCGGGAAATTTAAGGTCACACCTCTTAACGCATACCGATGAGAGATCATTTAAGTGCGAACGTTGTGAATACGTGAGCAAATCGGCCAGATATTTAAAATTGCACATGCGAGTGCATTCGGATGAGAAGCCTTTTAGATGCCGGAAACCTACAATTCCGGACGGAAGGGCAACTGAGTACGGCCAAAGTGGTTCTGACTTTAAATTTCCCGAGTATGAACCCAAATACATACTGTTAGATAACGGCGGGAAACTGTACACTTGCGATCTTTGCGGTTATAAATGCTACCCAGTGAGTAGCATAAAACAGCACATGAAGATCCATTCCAACCAGAAACCTTTCGCCTGTGAGATTTGCAATCATAAATGCAAATTCgccggaaatttgaaacggcacatgttgacccacaccgacgagaagcacTTCGTCTGCGACCGTTGCGGTCACAAATGCCGCACGAAGACAGCTTTGAAGTGGCACATGGAGAAACACATCGGCAAGAAAGTGTTCGGTTGTGACCTGTGCGATCAAAAATTTCAACAATCTACAAATTTGAAAAGGCACAAGACAACGCActccgacgagaagccgttcagttgtgaatTTTGCGATTACAGAGGTCGACGGTTAGATTTACTGAGAAGCCACTCGTTATCACATAACGGCGAGAAACCGATCAAATGTGccctttgcgattttaaatgcgcAAGACGTTTGTATCTGAAAAagcacatgttaacgcacaccggcgagagaCGCTTCGAATGTcatctttgcaattataaatgcgGTGCGTCTGGAAATTTAAAGTCACACTTCTTAACGCATACCGAGGAGAGGTCTTTTAAGTGCGAACGTTGCGAGTACGTAAGCAAATCGGCAAGGTACTTAAAACTGCACATGCGAGTACATTCGGATGAAAAGCCGTTTAGATGCCCGAAACCTACAATTCCGGACGGAAGGGCAACTGAGTACGgccaatttaaatttcccgaGGGTAAACCCAAATACATACTGTTAGATAACGGCGAGAAACTGTACACTTGCGATCTTTGCGGTTATAAATGCTACGCAGTGAGTAGCATAAAGCAGCACATGAAGAGCCATTCCAACCGGAAACCTTTCGCCTGTGAGATTTGCAATCATAAATGCAAATTCGCCGCACATTTGAAACAACATCTGTTGACGCACACCAGCGAGAAGAACTTCGTCTGCGATCGTTGCGGTCACAAATGTCGCATGAAAGGAGCTTTGAAGCGGCACATGGAGAAACACATCGGCAAGAAAGTGTTCGGTTGTGACCTATGcgatcaaaaatttcaaaactctGCAGATTTGAAGAGGCACAAGACAACGCActccgacgagaagccgttcagttgtgaatTTTGCGATTACAGAGGTCGACGGTTAGAGTTACTGAAACGCCACTCGTTAACACATAACGGCGAGAAACCGATCAAATGTGccctttgcgattttaaatgcgcAAGACATTCATATCTGCAAAagcacatgttaacgcacaccggcgagagaCGCTTCGAATGTCATCTCTGCAATTATAAATGCGGTACGTCTGGAAGTTTAAGTTCACACTTGTTAACGCATACCGATGAGAGGTCTTTTAAGTGCGAACGTTGCGAGTACGCAAGCAAATCAGCAAGGTGCTTTGGAATTTCTAAATCTACAATTTCGAACTCGAGGACACTCGGTTTTATATTTCTTGCGTACAAACCAAAACCCGTACCGTTATCTGACGGTGCGAAGCTGTTCGCTTGCGATCTTTGCGCTTATCAAGGCAAATCAATCGGCAGACTAAACCAGCACAAGAAGGTTCATTCCAAAGAGAAGCCGTTCGCATGCAAGACATGTGATTACAAATGCAAATTCGCTGGAAACTTGAAAAAACACATGTTGACGCATACTGGCGAGAAGCAGTTCATTTGCGAGAGATGCGGTTACAAATGCCGAGCAAACGCAGATTTGAAACAACATATGCgaacgcacaccggcgagaaaccgtttagttgtgatACGTGCGCTCGTAAAGGCTCTGGAGGTTTTGATGGCATACCTTGTTCATTAATGATGCGCGCTAAAGAGTACGTGATCACACCTTTATTGGAATTAATAAATCTTTCGTTTATCGAGGGTAAATTTCCAGAAATACTTAAAACTGCCACAATTGTGCCGGTTTATAACGGTAAGGACAGGTCGTTTCTCTGTAATTATAGACCCATTTCTCTTTTGTCAGTATTTGCGAAGATTTACGAAAAGTGTTTCTATATGAGGCTATCAAATTATCTGACCTCTAAATCCTTAATAAATCAACACCAGTTTGGTTTCAGGAAAAATTGCTCGACAACAGATGCGATTCTATGCCTTTACAACTATATTATCAAACATCCCGATGACAAAGATGAAGTGGCCTGTGTTTTCTTTGATCTCACCCGAGCATTTGACGTGGTGGACCACAAACtactcttaaataaattgtacagGTATGGCGTACGTGGCCAAGCTCTTCATTGGTTGGAATCCTATCTTATGGATAGACGGCAGTGTGTCAAAATAAATCAGGATGGTAAGAAGTACTTTTCAAGTTATGAAACAACAAACGTGGGTGTTCCTCAGGGTGGTATATTGGGTCCTTTACTGTTTCTGGTATTCATCGATGACATCAATATACAGGGTTGTCATCTGACCTTGTTTGCAGATGACACAACAGCAGCAGTTGGGTCTGAAGATTTGGCTGATCTTTGTTTAGAAGCTAACATGACAGTATCTGGGACGGTATCTGGGATGTCTGATTATTGTTTATGA
Protein Sequence
MLTHSDEKPFVCDRCGYECRTASILKGHMQKHVSEKQFSCDLCAQKFQHSANLRRHKFTHSDEKRFGCEFCDYRCQRLEYLRRHLLVHNGEKPFKCALCDHKCAQLAKLKQHMLMHSGERQFKCHLCSYEGNRQANLRLHLLTHTEETPFKCGVCEFASKTARCPKPTIPDGRATEYGQSGSDFKLPEYKPKYVLLDNGKRLYTCDLCGYKCHKVSSIKHHMRIHSNRKPFACEICNYKCRFAGNLKQHMLTHTGEKHFVCDRCGHKCRTKAALKWHMEKHIGKKVFGCDLCDQKFQHSTNLGRHKLTHTGEKPFSCEFCDYRGRRLDLLRSHSLTHNGQKQIKCALCDFKCARHMYLKRHMLTHTGEKHYKCQICSYETSQVGNLRAHFLKHTDERSFKCERCEYVSKSARYSGFSEITTSELKTRIKRDPLERTPKHIVLANGVRLFTCDFCDYKCKPISSIKQHMKTHSKKEPFVCKICNYKCRFAGNLKRHILTHIGKKRHTCEHCGYKCREGVRLKQHIRTHTCEKPEPKHTNEKRFFCDYCNYRCRGGASLKQHMRKHTGEKPFSCDQCAQKFQQLGNLKRHMLTHTGQKPFSCYLCAQRFQQLGNLKRHMLIHTGEKPFGCDFCDYKGRSLADVKQHKLIHSSEKPLQCAVCDYRCALPKQLRRHLLTHHGDKHYKCYLCSYECNQAGKLRLHFLKHSDERPFKCELCEYVGKTARHLQEHKRVHSDEKPFKCDLCECSGISKSTISDIRRPERATAQYIPEFNLLLSNGMRLFICNLCDYKCQRKDSMRRHVKTHSDEKPFVCEICNYRSRVPLKQHMLKHAGEKQFVCDRCGFSCFEIGALNNHIRTHSGEKLFSCDLCTKKFQHLRHMRRHKLIHTDEKRFTCEVCDYRCQRSEDLKRHVFKHSGEKSIKCALCDFKCARRTYLKKHMLTHTGEKRFKCQLCSYESSQAGNLRSHLLTHTDERSFKCERCEYVSKSARYLKLHMRVHSDEKPFRCRKPTIPDGRATEYGQSGSDFKFPEYEPKYILLDNGGKLYTCDLCGYKCYPVSSIKQHMKIHSNQKPFACEICNHKCKFAGNLKRHMLTHTDEKHFVCDRCGHKCRTKTALKWHMEKHIGKKVFGCDLCDQKFQQSTNLKRHKTTHSDEKPFSCEFCDYRGRRLDLLRSHSLSHNGEKPIKCALCDFKCARRLYLKKHMLTHTGERRFECHLCNYKCGASGNLKSHFLTHTEERSFKCERCEYVSKSARYLKLHMRVHSDEKPFRCPKPTIPDGRATEYGQFKFPEGKPKYILLDNGEKLYTCDLCGYKCYAVSSIKQHMKSHSNRKPFACEICNHKCKFAAHLKQHLLTHTSEKNFVCDRCGHKCRMKGALKRHMEKHIGKKVFGCDLCDQKFQNSADLKRHKTTHSDEKPFSCEFCDYRGRRLELLKRHSLTHNGEKPIKCALCDFKCARHSYLQKHMLTHTGERRFECHLCNYKCGTSGSLSSHLLTHTDERSFKCERCEYASKSARCFGISKSTISNSRTLGFIFLAYKPKPVPLSDGAKLFACDLCAYQGKSIGRLNQHKKVHSKEKPFACKTCDYKCKFAGNLKKHMLTHTGEKQFICERCGYKCRANADLKQHMRTHTGEKPFSCDTCARKGSGGFDGIPCSLMMRAKEYVITPLLELINLSFIEGKFPEILKTATIVPVYNGKDRSFLCNYRPISLLSVFAKIYEKCFYMRLSNYLTSKSLINQHQFGFRKNCSTTDAILCLYNYIIKHPDDKDEVACVFFDLTRAFDVVDHKLLLNKLYRYGVRGQALHWLESYLMDRRQCVKINQDGKKYFSSYETTNVGVPQGGILGPLLFLVFIDDINIQGCHLTLFADDTTAAVGSEDLADLCLEANMTVSGTVSGMSDYCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-