Dpar001079.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:8297957-8308265[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8.8e-05 0.0081 18.0 1.3 1 23 14 36 14 36 0.97
2 31 0.0041 0.38 12.7 2.4 1 23 42 64 42 64 0.98
3 31 7.1e-07 6.5e-05 24.6 0.8 3 23 72 92 70 92 0.98
4 31 3.1 2.9e+02 3.7 2.6 3 23 100 120 98 120 0.97
5 31 0.0062 0.58 12.2 3.8 2 23 127 148 126 148 0.97
6 31 0.0098 0.9 11.5 2.9 1 23 154 176 154 176 0.99
7 31 0.072 6.7 8.8 8.7 1 23 235 257 235 257 0.98
8 31 0.00029 0.026 16.4 0.5 1 23 263 285 263 285 0.98
9 31 6.4e-05 0.0059 18.4 2.5 1 23 291 313 291 313 0.98
10 31 1.9e-05 0.0018 20.1 1.1 1 23 319 341 319 341 0.96
11 31 0.015 1.4 10.9 5.4 1 23 347 369 347 369 0.97
12 31 0.00066 0.06 15.2 1.7 2 23 376 397 375 397 0.97
13 31 0.023 2.1 10.4 6.2 1 23 403 425 403 425 0.98
14 31 0.00013 0.012 17.5 2.5 1 23 431 453 431 453 0.99
15 31 0.09 8.3 8.5 4.6 1 23 500 522 500 522 0.97
16 31 0.00052 0.048 15.6 1.6 1 23 528 550 528 550 0.98
17 31 0.0023 0.21 13.5 4.9 1 23 556 578 556 578 0.98
18 31 9.5e-06 0.00088 21.0 1.8 1 23 584 606 584 606 0.98
19 31 0.034 3.2 9.8 1.0 3 23 614 634 612 634 0.97
20 31 0.00097 0.089 14.7 0.9 2 23 641 662 640 662 0.97
21 31 0.0014 0.13 14.2 2.6 1 23 668 690 668 690 0.99
22 31 0.17 16 7.6 5.0 1 23 746 768 746 768 0.97
23 31 0.00017 0.016 17.1 1.8 1 23 774 796 774 796 0.98
24 31 3.6e-06 0.00034 22.3 0.7 1 23 802 824 802 824 0.98
25 31 8.4e-06 0.00077 21.2 1.9 1 23 830 852 830 852 0.98
26 31 0.086 8 8.6 3.3 3 23 860 880 858 880 0.97
27 31 0.00011 0.0098 17.7 2.1 1 23 886 908 886 908 0.99
28 31 0.00031 0.028 16.3 0.9 1 23 914 936 914 936 0.99
29 31 0.00032 0.03 16.2 1.2 1 23 942 964 942 964 0.99
30 31 0.00032 0.029 16.2 0.9 1 23 970 992 970 992 0.99
31 31 0.0054 0.5 12.3 2.2 2 23 997 1018 996 1018 0.96

Sequence Information

Coding Sequence
ATGAAGCAGCACTTCAGGACCCATTCCGACGTGAAACCTTTCGCCTGTGAGACCTGCGGTCACAGATCTCGAACCGCCACGAATTTGAAGATACACATgttaacacacaccgacgagaagccgttcgttTGCGATCGTTGCGCCTACAAATGCCGCACGGCCGGGACCTTGAAACAACACATGCTAAAACACACCGGTGAGAAATCGTTCGGTTGTAATCTgtgtgataaaaaatttaaacggcCTGTAAATTTGAGGAggcacatgttaatacacagccgcgagaagccgttcggttgtgaattttgcgattataagtgccgatgTCCGGGAGAACTCAAGCCCCACATGAGAATACATAACAGGGAGAAAACGATTAAGTGTAccctttgcgattttaaatgcgcGCATCCTCTGTACTTGAAGAAGCACATGATCACGCACACCGACGAGAGACGCTTCAAGTGTCACCTCTGCAGTTACGAATGCAATCAGGCCGGAGGCTTAAGTTCACACTTACTaacgcacaccgacgagaagccgtttaaGTGCGAACGTTGCGAATATGTGGGCAAAACAGCCAGGTGCACTGGAATTTCTGAACATACAATTCCAGACGCGAGCACACTTGAAGAGAGTGTACCTGATTCTGATCCTGAATCTCTTGTATACATAATCAAATGCGTTGATGGTGTGAAGATGTTCAtatgcgatctttgcgattataaatgcaaacGAAAATGTCACATTAACCAGCACATCAAGACACATTCCGACGAGAAGCCCTACAGCTGTGAGgtttgcgattacaaatccCGATATGCCGGACTCTTAAAAAATcacatgttaaaacacaccgacggAAAGAAATTCGTTTGCGATCGTTGCGGTCATAAATTCTACACGAAAGTGTCTTTGAAGAATCACATGGCCTCACATTCCGACGAGAAGGCGTTCAGTTGCGATCTGTGTCCTAAAAAATTCAGTCTATCTTCAAATTTGAGAAGGCACAAGTTGGCACACACTGGCGAGAAGCGGTTCATGTGCGAATTTTGCGATTACAGATGCCAACGTTTGGAATATCTGAGGCGTCACATGTTCAAACATAAGGGTGAAAAGTCGATCAAATGTGCCCTTTGCGACTTTAAGTGCGCACAACCCACCTATCTGAAAAAGCACATGTTAACGCATACCGGCGAAAAACGCTTCAAATGCCATCTTTGCAGTTACGAATGCAGTCAGACGGGAAATTTAAGGTCGCACTTCTTAACGCACACCGATGAGAGATCATTTAAGTGCGAACATTGTGAATACGTGAGCAAGTCGGCCAGATATTTAAAATTGCACATGCGAGTGCATTCGGATGAAAAGCCGTTCAAatGCCCTGGGATTTCTAAATGTACGATTTCGGACTTGGCGCCACAAGCACCTGACCTTAAATATCTTGAATATGTACCCAAATACATACTCGTACAGTCACCTAATGGTGTGAAGCTGTTCGCTTGCGACATTTGCGGTTACAAATGCAAACTAGACAAACACATGAGGCAGCACGTGAAGACCCATTCCGACGAGAAACCTTTCGTCTGTGAGATCTGCAGCCACAAATCTCGATTCGCCGGAAACTTGAAGCAGCACATGTtgacgcacaccggcgagaagcacTTCGTTTGCGATCGTTGCGCTTACAAATGCCGCACGACCTCGtctttgaagcagcacatgcgaaaacacaccggcgagagaCCGTTCAGTTGTAACTTGTGCGAGCAGAAATTTCAACAGTCGGGAAACTTGAAGAagcacatgttaacgcacacccacgagaagccgttcggttgtgaatTTTGCGAATATAAATGCCGACGCCTGGCGGAACTTAAGCAACACGTGATAATACATAACAGCGAGAAAACGATTAAATGCGCCCTTTGCGATTTCAAATGCGCGCAAGCTGTGTACTTGAAGCGGCACATGATCACGCACGCCGACGAAAGGCGCTTCAAATGTCGCCTTTGCAGTTACGAATGCAATCGGGCCGCGAATTTGAGGTCGCACTTACTAACGCACACCAACGAGAAGCCGTTTAAGTGCGACCGCTGTGAGTACGCAAGCAAATCGGACAGATGCACTGACCATACAATTCCGGACGTAAGAACACTTGCATATGGCGTACCTGATTCTGGTTTAGAATGGCTCAAATACGTAGACAAATGCGTTGATGGTGTGAACCTGTTCATTTGtgaactttgcgattataaatgcgaaCGAAGATGTTCCATGAGACAGCACGTCAAGGTACATTCCGACGAGAAGCCCTACAGCTGCGAGACTTGCGGTTACAAGTGCCGATTCGCCGGAAGCTTAAAAAatcacatgttaatacacaccgacgGAAAGCAGTTCGTTTGCGATCGCTGCGGTTATAAATTCTACACGGAATCACAATTGAAGGTCCACATGGCCACGCAttccgacgagaaaccgttcactTGCGACCTGTGTCCCAAGAAATtcaatttatcttcaaatttGACGAGACACAAGCTAACGCACACCCGCGAGaggccgttcggttgtgatttTTGCGACTTCAGATGTCTTCGTTTAGAAAACCTGAAACGCCACATGTCAACGCATAACGGTGAGAAACCGTTCAAGTGCTCGCTTTGCGATTTTAAGTGCGCGCAAGCTTCGggtttgaaacagcacatgttGACGCACACTGGCGAGAGGCACTACAAATGTAATCTTTGCAGTTACGAAGGCAATCGCTCGTCTAATTTAAGGTTACACTTGTTaacgcacaccgacgagaagccttTTAAGTGTGACCGTTGCGAGTACGTAAGCAAATCGGCCAGGTATTTAAAATTACACATGCGAGTGCATtcggacgagaagccgttcaggtGCGACCTTTGCGAATACGCGTCCAAGTTTCAAGGTAACTTACTGAAACACATGTCGACGCATGAGGAACTGCTCAAGTGTAACGTTTGTGAATACTCGTGTAAACTGGCCAAGGATTTGAAAAGACACGTGTCATCGCATGCAAGTGACAATGCGCCCTGA
Protein Sequence
MKQHFRTHSDVKPFACETCGHRSRTATNLKIHMLTHTDEKPFVCDRCAYKCRTAGTLKQHMLKHTGEKSFGCNLCDKKFKRPVNLRRHMLIHSREKPFGCEFCDYKCRCPGELKPHMRIHNREKTIKCTLCDFKCAHPLYLKKHMITHTDERRFKCHLCSYECNQAGGLSSHLLTHTDEKPFKCERCEYVGKTARCTGISEHTIPDASTLEESVPDSDPESLVYIIKCVDGVKMFICDLCDYKCKRKCHINQHIKTHSDEKPYSCEVCDYKSRYAGLLKNHMLKHTDGKKFVCDRCGHKFYTKVSLKNHMASHSDEKAFSCDLCPKKFSLSSNLRRHKLAHTGEKRFMCEFCDYRCQRLEYLRRHMFKHKGEKSIKCALCDFKCAQPTYLKKHMLTHTGEKRFKCHLCSYECSQTGNLRSHFLTHTDERSFKCEHCEYVSKSARYLKLHMRVHSDEKPFKCPGISKCTISDLAPQAPDLKYLEYVPKYILVQSPNGVKLFACDICGYKCKLDKHMRQHVKTHSDEKPFVCEICSHKSRFAGNLKQHMLTHTGEKHFVCDRCAYKCRTTSSLKQHMRKHTGERPFSCNLCEQKFQQSGNLKKHMLTHTHEKPFGCEFCEYKCRRLAELKQHVIIHNSEKTIKCALCDFKCAQAVYLKRHMITHADERRFKCRLCSYECNRAANLRSHLLTHTNEKPFKCDRCEYASKSDRCTDHTIPDVRTLAYGVPDSGLEWLKYVDKCVDGVNLFICELCDYKCERRCSMRQHVKVHSDEKPYSCETCGYKCRFAGSLKNHMLIHTDGKQFVCDRCGYKFYTESQLKVHMATHSDEKPFTCDLCPKKFNLSSNLTRHKLTHTRERPFGCDFCDFRCLRLENLKRHMSTHNGEKPFKCSLCDFKCAQASGLKQHMLTHTGERHYKCNLCSYEGNRSSNLRLHLLTHTDEKPFKCDRCEYVSKSARYLKLHMRVHSDEKPFRCDLCEYASKFQGNLLKHMSTHEELLKCNVCEYSCKLAKDLKRHVSSHASDNAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-