Dpar038206.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284482.1:28203741-28204431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-07 6.3e-05 24.0 0.0 9 35 5 30 1 32 0.89
Sequence Information
- Coding Sequence
- ATGGACCGGGAATTAGCCTCTGTAAGGAATGGCGGATCAATTAAGAAAGCTGGGCGAGAATTTGGTATCCCGGAGTCAACTATTCGAAATTGCGAACCATGCCATAAAGATGGCCAAAAAGCATATAAAATATGGAACAATTTCAATACGGTGACCAAAATGGCTGGCAAAGAATGGTACTACAAATTCTTGAAAAGAAACCCACTTTTCTCTTTGCGAAAACCAGAGCCAACCAGTATAAATAGAATCTGTGCCTTCAACGAAGAACAAGTATCAgagttttacaaaaatttgaagaacatttatgaaaaataccacTTCCAAGGCGACAAGATTTTCAACGTTGACAAAAACCAGCCAGACATCTCACTCCTAAAggcattaaacaatttggagCAAAAAACTTCCGGGGAACGTGGGAAAACCGTTACAGTGATCTGTTGCTTCCATGCAACTGGTACATATTATGTTCCTCCAATGTTTATTTTTCCAAGGACCAGAATGACAAAAACTTTAGAAAGAATGGGCATCCAAATGGCTACTTCAAGTCCGGCTGGAGTAATGAGGGATTATTTGTCAAGTGGTTTGAGCATTTCAAAAGAAATGTCAAATCTTCTAGACCTGATCcagtattaa
- Protein Sequence
- MDRELASVRNGGSIKKAGREFGIPESTIRNCEPCHKDGQKAYKIWNNFNTVTKMAGKEWYYKFLKRNPLFSLRKPEPTSINRICAFNEEQVSEFYKNLKNIYEKYHFQGDKIFNVDKNQPDISLLKALNNLEQKTSGERGKTVTVICCFHATGTYYVPPMFIFPRTRMTKTLERMGIQMATSSPAGVMRDYLSSGLSISKEMSNLLDLIQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -