Dpar008015.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284476.1:11533487-11534525[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00094 0.19 12.9 0.1 22 36 12 27 2 33 0.81 2 2 0.0012 0.25 12.5 0.0 6 43 49 85 44 87 0.83
Sequence Information
- Coding Sequence
- ATGGAAGCTTTAGCAGCTGCAAAGAATGGAATGCTGGCCAAGTCTTATGGTGTGCCAAGAACAACATTGCTTTGCAAGTTGAAAGGAAAGAGGAGGATGGGTCCGCCGACTTTCTTTACCAAGGAAGAGGAGAACTTGATCATCATGGAAGCTTTAGCAGCTGCAAAGAATGGAATGCTGGTAGTTACTACAGCCAAGTCTTATGGTATGCCAAGAACAACATTGCTTTGCAAATTGAAAGGAAAGTATCCAGAAGAGAGGAGGACTTTCTTTACCAAGGAAGAGGAGAACTTGATCGTAAAGTGGATACCTATTAGAAATGGCAGAAAGAAAAACTCCTGTAACAAAACAAATGTTGCTCAATAG
- Protein Sequence
- MEALAAAKNGMLAKSYGVPRTTLLCKLKGKRRMGPPTFFTKEEENLIIMEALAAAKNGMLVVTTAKSYGMPRTTLLCKLKGKYPEERRTFFTKEEENLIVKWIPIRNGRKKNSCNKTNVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -