Dpar033357.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284481.1:16303563-16308016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-08 5.6e-06 27.4 0.0 2 42 16 56 15 58 0.94 2 2 0.87 1.8e+02 3.4 0.0 17 35 87 105 81 113 0.72
Sequence Information
- Coding Sequence
- ATGTCAAATAAACGCAAGAGGACGTCTCAGCGTCAAAAATGGGGTGAGGAGAACATGACAGGGGCTATAGAAATGGTTTCAACTGGACAATCTGGCCATTTGAAAACTGCTATTATTTGCAACGTGCCAAAAACTACACTTGAACGTCGCGTCAAAGGAACCACCAAAGTGAGAAAAGAATTGCCTACAACGGTTAAAAAAGTGCCACAACGTAAAAAGTGGAATGGGGGAGACATGAAAAAAGCAGTGGTGCAAAGAATGAGTTATTTGAAGGTACGTAAAACATTCAACGTGCCTCGAGCCACCCTTTTCAGACTTTGTAAGAAGGATGGGGCTGATAGTGTGGTATGCCAAACAAAACTAGGGAGGAAATCTATTTTGCCGGACCATCTAGAAAAAGAGCTAGTGAAGCATTGCCTGGTAACGGAGAAAACCTTTTATGGATTAACAAGGCGGGATGTCTGTCATCTTGCATTCCAGTtagcaagaagaaataaaattccaAATTCTTCCTCATTACTAAAAAGAGCGGCTGGGAAGGACTGGCTAAGTCGTTTTAGATTGAGGCTCACACCAAATTTACTCTAA
- Protein Sequence
- MSNKRKRTSQRQKWGEENMTGAIEMVSTGQSGHLKTAIICNVPKTTLERRVKGTTKVRKELPTTVKKVPQRKKWNGGDMKKAVVQRMSYLKVRKTFNVPRATLFRLCKKDGADSVVCQTKLGRKSILPDHLEKELVKHCLVTEKTFYGLTRRDVCHLAFQLARRNKIPNSSSLLKRAAGKDWLSRFRLRLTPNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -