Basic Information

Insect: Dorcus hopei
Gene Symbol: echdc1
Assembly: GCA_033060865.1
Location: CM065422.1:339593-347848[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6 6.6e+02 2.6 0.9 2 23 252 272 251 272 0.89

2 15 0.00091 0.1 14.6 1.9 1 23 278 300 278 300 0.97

3 15 2.1e-05 0.0023 19.7 0.4 3 23 305 325 304 325 0.99

4 15 1.7 1.9e+02 4.3 0.1 6 23 330 348 330 348 0.88

5 15 0.25 27 6.9 2.1 2 23 351 372 350 372 0.96

6 15 6.5 7.2e+02 2.5 4.7 2 15 379 392 378 401 0.73

7 15 0.32 35 6.6 9.4 1 23 419 441 419 441 0.98

8 15 0.0076 0.84 11.7 0.2 1 23 447 470 447 470 0.94

9 15 0.031 3.4 9.8 0.3 3 23 513 534 512 534 0.95

10 15 9.5 1.1e+03 2.0 1.4 3 23 560 581 558 581 0.92

11 15 0.47 52 6.1 0.3 2 23 583 604 582 604 0.97

12 15 0.18 20 7.4 1.0 2 23 627 649 627 649 0.94

13 15 0.01 1.2 11.3 0.6 1 23 660 682 660 682 0.96

14 15 0.041 4.5 9.4 1.6 1 23 683 706 683 706 0.88

15 15 0.00056 0.062 15.3 0.7 2 23 751 773 750 773 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6	6.6e+02	2.6	0.9	2	23	252	272	251	272	0.89
2	15	0.00091	0.1	14.6	1.9	1	23	278	300	278	300	0.97
3	15	2.1e-05	0.0023	19.7	0.4	3	23	305	325	304	325	0.99
4	15	1.7	1.9e+02	4.3	0.1	6	23	330	348	330	348	0.88
5	15	0.25	27	6.9	2.1	2	23	351	372	350	372	0.96
6	15	6.5	7.2e+02	2.5	4.7	2	15	379	392	378	401	0.73
7	15	0.32	35	6.6	9.4	1	23	419	441	419	441	0.98
8	15	0.0076	0.84	11.7	0.2	1	23	447	470	447	470	0.94
9	15	0.031	3.4	9.8	0.3	3	23	513	534	512	534	0.95
10	15	9.5	1.1e+03	2.0	1.4	3	23	560	581	558	581	0.92
11	15	0.47	52	6.1	0.3	2	23	583	604	582	604	0.97
12	15	0.18	20	7.4	1.0	2	23	627	649	627	649	0.94
13	15	0.01	1.2	11.3	0.6	1	23	660	682	660	682	0.96
14	15	0.041	4.5	9.4	1.6	1	23	683	706	683	706	0.88
15	15	0.00056	0.062	15.3	0.7	2	23	751	773	750	773	0.92

Sequence Information

Coding Sequence: ATGACGGTAAAGATTTGCAGGGTTTGTTTTGAGGAGGGCGACGACCTAGAAAGCTTAGGAAGCGGAACCAACTCTTACGGACACAAATTGGCTTCCTGCGTACCAGAAATAGACGTGTATGTAGTTTGCAATCCGAGCATTTGCAGCACGTGCTTGCCGATGGTGGAAGTGGCGTACGCACTTCGTGAAACGTGCATTGAAAACGAGAGGAAATTCAGAACTAAAAAGGTCAACGTTATCGGGGGGAAGTGCGAGGTTCAAGCGGCCAGGAGAAGCCCTGAAGTTACATCCGAGACGGTCATTACAGAACACGTCGATGCGATCGACAACAATCAAATTCACGTCTCGGTCGTTTTTAACAACTGTTTCAATGAGAGTCGTGTGCCCCCGGTCATGATTAAGGAAGAAATTACCCTGAGCGACTATTTCGATTCGCCCAAATCCGCTTGCGCGAACAACCTCGATGGAGGAAGTAGTAGAGACGACGCGTTAAGTCAAAATTTACACGAGACGTTTAAGTCGGAAGACGAACTCATCAGTTCTGTGAATGAAATGTGTGCGGATTTAGAAAACTTGGGGGAAATTCCGTGTGCGAACGATGCAGGAGAGACGAGCGCGCAGTTATTCAGCGATGGTGAAAGCGAAGCGGGTTTCGAATTGGATCTGGATTCGTTGAACTTATTCAGCGAGGATGAAATGAACGAATCCCAAGGGAAGACTAAGAACGAACGGATGAAAGCGAGCAAGGTAGTGTCGTGTAAAATTTGTAAAGAAATGCACGACGAGGATTACATCAACGCGCACATGAAAACGCACGACGTGCGGAGCACCTACGATTGCGGACGATGCGACAAGACTTTTTCGGATACCTGCGAGTTAGAGTCGCACAGTTTAACTCACCTGAAAAACCTGTGCGATATCTGTGGGAACGTGTTCAAGTCGAAAAGTGATTTGGTCGAACACAAGCGGACTCACGTGACCGTGTGTTGCGGGGAAGAGTTCTCAACGGGCAGTTTGTTACAGTTACACGCTTACCAAAAGCACGGGAAGACCTGCGGAATTTGCAAGAAGACTTGCGACAGTTTCAACGTGCTGTTCCTTCACATGCTTGAGCACATGGGCGAGGATAAGCTTCGCTGCTGCAAATGTAAGAAGACGTTCTCAAGCGACGCACTCAAGCTCGGCCATCGCTGCGAGTCGCACGACGGAGATCAAGAACAAGATCGTGGCGTTAAAAAGAACCAACGAAAAAAGTTTCAGTGCAAATATTGCCACTCGCGGTTTAAAAAGAGGAGGACTTACGTGTTACACTTGAGGCATCACCAGCGGAAAGGTTATTTCGAGTGCGATCGATGCGCTGCCTCTTTCGCATTGAAATCCGAATTGGAGAAGCACCTCTCGGAGAAGCACGGCCCAATCAAGCAGGATGATTCGGATGTGAACATGCCAGAAGTATTAAATGACAACTGCGAGGCATTGAGTTTTCCCCGTGAGCAAAACGCAGGCACAGATTCCATCGAAGCAAACTGGAATATGTGCCAACTTTGTTCGGGTAAGTTTCAAGACCCCTCGCTGCTGACTCAACACCTATTAAAAGATCACTGCGTGAAGACGGCCAGCATCGAACTGGTTGATTATCAAAAATCAAATCTAGTCGAGGCCCCCGTCCGGCTTCACTGTTACGCCTGTCAAGAGATGTACATGAACGTGAACCTATACTTGAAACACATGAAATTATTTCACACCAAGTGCACCGTCTGCAATCTAAGATTGAACGACGTAAGGAACGTAATAGAACATGTACAGCGACACtacaaaaacaagaaagaagaCTGCAAGCTTTCGCAAACGCACTTGTCGGTGAAGAGCGAGCTACCGTACTGCGAACTCTGCCAGACGGAGTTCCCGGACAAGCCCTGCTACAACGTGCACTTGGACAAGTTCCACAAAAAGGGCTTTCGCTACTCGACCAAGCTGTACAGGTGTAAAATTTGCTATGACGTGTTCGATACGAAGCGGGAATTAAGAGAGCACGGGCAGGAGCACTACATATGCATTCATTGCAAAAAGACTTTCGCGTTAAAAGCAAGCCTGCGACAACATGTGATCTTTTACCACAATAATTCTTCAAAGTCGACGGCAAGTGCTGCTTTAAATCAGCGAAAGAGGGCGCCTTATCGGCGCTTAACCTTAAATTCACAGGCTTCCTCTTACAGTCTGTCCCAAAAACAAATCGTGAGGTTTCACAAGACATGTAAAACGTGCGGTGAAGTTTTCAGTAACACTAAGTTTTTGATGAAGCACATCTACGCCGTGCATAGCCGAGGAAACTCGAACGTGACGACAATTAAGGACAATCAAGGCGGTGACAGCGGTTTCGAAGTGATTCGCAAGCACCTGTGGCAATTCAGCGGAGGTGTGGTTACTTTGAGCAAAGACGAAACCACCGGTGTGGCGACGGTGTGTTTCAACCGGCCGGAAAAGAGGAACGCCTTCAGCGGGCAAATGATGGTTCAGTTTAGGGACCACGTCGAAGAGTTGGAACGATGGAACACAGGGAAGGGCGTCATCGTGTATGGGGAAGGAAATTTTTGTGCCGGGGGCGATTTGGATTTCGCCAGATCAACGGCCACCACGGAAGGGGGTTCTTACATGAGCAGGTGGATGATGGATGCCATGACCCGATTGCAGAAGCTACCGCTCGTTACTGTTTGCCTCCTGACCGGGTCGTGTCTGGGGGGCGGTGCTGAGCTTTCAGTTTTTTGCGATTACATAATTGCGGGGGATGATTTGAGATATGGTTTCATTCATGGGAAAATGGGTATTATCACTGCTTTCGGGGGTGGAACAAGGTTAGCTAGGAGAATTGGCTATCACAAAGCGTTGGATTTACTGCTGACGGCTAAAGTGTTAAAAGCTGATGAGTTAGTTCAGTTAGGGTTAGCTGAGTGTGTGGTGCCAGCATCGGAAGCTTTGGGAGAAGCTAAGGAATGGCTGAACAAAAGGCTCCAACACCATCATGATGTCGTCAGAGCAATGAAAGACACTATGTACAAGGCAAGTGTTTGTTCCTATACCGATTCTTTGAGCTACGAAAGAGATAGATTTCCCCCATTCTGGGGTGGTCATATCAAGAAAGAAGCACTGCTTAAAAACATAAAGCACGTGCGAAAGTAA
Protein Sequence: MTVKICRVCFEEGDDLESLGSGTNSYGHKLASCVPEIDVYVVCNPSICSTCLPMVEVAYALRETCIENERKFRTKKVNVIGGKCEVQAARRSPEVTSETVITEHVDAIDNNQIHVSVVFNNCFNESRVPPVMIKEEITLSDYFDSPKSACANNLDGGSSRDDALSQNLHETFKSEDELISSVNEMCADLENLGEIPCANDAGETSAQLFSDGESEAGFELDLDSLNLFSEDEMNESQGKTKNERMKASKVVSCKICKEMHDEDYINAHMKTHDVRSTYDCGRCDKTFSDTCELESHSLTHLKNLCDICGNVFKSKSDLVEHKRTHVTVCCGEEFSTGSLLQLHAYQKHGKTCGICKKTCDSFNVLFLHMLEHMGEDKLRCCKCKKTFSSDALKLGHRCESHDGDQEQDRGVKKNQRKKFQCKYCHSRFKKRRTYVLHLRHHQRKGYFECDRCAASFALKSELEKHLSEKHGPIKQDDSDVNMPEVLNDNCEALSFPREQNAGTDSIEANWNMCQLCSGKFQDPSLLTQHLLKDHCVKTASIELVDYQKSNLVEAPVRLHCYACQEMYMNVNLYLKHMKLFHTKCTVCNLRLNDVRNVIEHVQRHYKNKKEDCKLSQTHLSVKSELPYCELCQTEFPDKPCYNVHLDKFHKKGFRYSTKLYRCKICYDVFDTKRELREHGQEHYICIHCKKTFALKASLRQHVIFYHNNSSKSTASAALNQRKRAPYRRLTLNSQASSYSLSQKQIVRFHKTCKTCGEVFSNTKFLMKHIYAVHSRGNSNVTTIKDNQGGDSGFEVIRKHLWQFSGGVVTLSKDETTGVATVCFNRPEKRNAFSGQMMVQFRDHVEELERWNTGKGVIVYGEGNFCAGGDLDFARSTATTEGGSYMSRWMMDAMTRLQKLPLVTVCLLTGSCLGGGAELSVFCDYIIAGDDLRYGFIHGKMGIITAFGGGTRLARRIGYHKALDLLLTAKVLKADELVQLGLAECVVPASEALGEAKEWLNKRLQHHHDVVRAMKDTMYKASVCSYTDSLSYERDRFPPFWGGHIKKEALLKNIKHVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -