Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:76729404-76730417[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.5e-05 0.0038 19.1 0.5 1 23 59 81 59 81 0.98

2 10 0.00026 0.029 16.3 0.6 1 23 85 107 85 107 0.98

3 10 0.085 9.5 8.4 0.4 1 23 113 135 113 135 0.94

4 10 0.44 49 6.2 0.7 1 19 141 159 141 159 0.83

5 10 0.0026 0.29 13.2 5.8 1 23 170 193 170 193 0.95

6 10 7.3e-05 0.0081 18.1 0.2 1 23 199 221 199 221 0.98

7 10 0.042 4.7 9.4 0.6 3 23 231 251 230 251 0.98

8 10 0.24 26 7.0 10.1 1 23 257 279 257 279 0.97

9 10 1.9e-06 0.00021 23.0 0.5 1 23 285 307 285 307 0.98

10 10 0.13 15 7.8 0.2 1 21 313 333 313 334 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.5e-05	0.0038	19.1	0.5	1	23	59	81	59	81	0.98
2	10	0.00026	0.029	16.3	0.6	1	23	85	107	85	107	0.98
3	10	0.085	9.5	8.4	0.4	1	23	113	135	113	135	0.94
4	10	0.44	49	6.2	0.7	1	19	141	159	141	159	0.83
5	10	0.0026	0.29	13.2	5.8	1	23	170	193	170	193	0.95
6	10	7.3e-05	0.0081	18.1	0.2	1	23	199	221	199	221	0.98
7	10	0.042	4.7	9.4	0.6	3	23	231	251	230	251	0.98
8	10	0.24	26	7.0	10.1	1	23	257	279	257	279	0.97
9	10	1.9e-06	0.00021	23.0	0.5	1	23	285	307	285	307	0.98
10	10	0.13	15	7.8	0.2	1	21	313	333	313	334	0.91

Sequence Information

Coding Sequence: ATGACGTTGAAGGACGATGGAAGtataacggcgaaagaagaaTTCGAAGTAAACTTCGATTGCAAAGTTTGCAAAGACGGCATCAAAATGAGCCTTTCCGATTTCAAGTTGCATTATAAATCCGTGCACAGGGGCAAGAGATTGCCTCGACGAGCGAGGAGCCCCTTTGCCCAGTACACTTGCGATATTTGCGCAAAGAATTTCAGCAACTTATTATACCTCAACAACCACATATTGCGGCACGACGATAAGTTCATCTGCGAAATATGCGATAATACTTTCAAGAACGTCCTCAATTATATTTTACACACGCGAACTCACTACAAGACGGAAATTTACACGTGCGTTTACTGCGATTACTCGACGACGGCCACTAACGACATTAAATCGCACTTGAGCGGACACGAGGGCAAGTATAAATACACGTGTGAAATTTGCTACAAGGGATTTCATATATTGGAGTGGTTCAAGGAACACGATAGTTACTACCACGACCGTATCAAGCCGTTCACGTGTGAATTCTGCGGCAAGAGTTTCGTGTATTCGAGGCACCTCACCTGTCACAAGAAAATAATCCACCAGGAAATGAGGACTTACGAGTGTAATATATGCAAGAAAAAGATCGCCAAGAAGAGGAACCTAATCGCGCACCTAGCCATCCACAAGGGCAAAAACAAAACGCCCTTGCTGTGCGAGATTTGCGGGAAAAAGATGGCCACCAAGGACAGGTTGAAGTTCCATCTCAGAATTCACACGGGAGATAAACCTCATTCGTGCAAGTTTTGCAGCAAGTGTTTTACGTGCAAGGAGCGACTTAAGGAACATTTACGGGTTCACACGGGAGAGAAACCGTTCGTCTGCAAGTTTTGCGGAAAAGGCTTCACGCAAAGAGCTCCCCTGAAGGTACACGAAAGGACGCACACCGGCGAGCGTCCTTACTTGTGCAGATTTTGCAAGAAGGGGTTTATTTCTAAAGGCCCCATGGATATACACATGAAAAACTGCCAAGGCTGA
Protein Sequence: MTLKDDGSITAKEEFEVNFDCKVCKDGIKMSLSDFKLHYKSVHRGKRLPRRARSPFAQYTCDICAKNFSNLLYLNNHILRHDDKFICEICDNTFKNVLNYILHTRTHYKTEIYTCVYCDYSTTATNDIKSHLSGHEGKYKYTCEICYKGFHILEWFKEHDSYYHDRIKPFTCEFCGKSFVYSRHLTCHKKIIHQEMRTYECNICKKKIAKKRNLIAHLAIHKGKNKTPLLCEICGKKMATKDRLKFHLRIHTGDKPHSCKFCSKCFTCKERLKEHLRVHTGEKPFVCKFCGKGFTQRAPLKVHERTHTGERPYLCRFCKKGFISKGPMDIHMKNCQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -