Dhop036715.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:76616269-76621809[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.04 4.5 9.4 0.7 2 23 569 590 568 590 0.97
2 11 0.36 40 6.4 3.1 1 23 594 617 594 617 0.93
3 11 0.00071 0.078 14.9 0.1 1 23 621 643 621 643 0.97
4 11 3e-05 0.0033 19.3 1.3 1 23 649 671 649 671 0.99
5 11 0.84 93 5.3 0.6 3 23 679 700 677 700 0.86
6 11 3.6e-07 4e-05 25.3 2.4 1 23 705 727 705 727 0.98
7 11 0.1 11 8.1 0.2 1 23 736 758 736 758 0.95
8 11 5.4e-06 0.0006 21.6 0.1 1 23 763 785 763 785 0.99
9 11 0.0001 0.011 17.6 0.1 1 23 791 813 791 813 0.98
10 11 5.1e-07 5.7e-05 24.8 0.7 1 23 819 841 819 841 0.98
11 11 0.82 90 5.3 2.4 1 23 920 943 920 943 0.94

Sequence Information

Coding Sequence
atggcAGGACGCCGACTTTATCGATTTGATAATGAGCAAGATATAGAGGAAATGAGGAGAATTTTAATGAAAGAGTCGGAAGACGAAGACTTGGAAGATCAATCGGAAGATGAGGTGAACGAGGAAAGAGTAGAGGATTCCGTAACGGAACAAGAAGCGTCTTCAGGAGACTCTGATGTTGATGACGATGTACAATTTGTTGGAAAAGATGGAGAAACAATTTGGTTCAAGAAGCAAAGGTTTCACAAAATAAGAGCACAACAACACAATATCATTAGGCATTTGCCTGGAGTTACCGGACCTGCTCGTAATATCACTGGAATATATGGTACCTGGAAATGTTTATTTGATGACGCGATGCTGGATATTATTGTTACATACACCAATCTGTACATTGATAAAATTCAGTCATCATTTCGTCGTACAAGGGATGCGGAACGCACtgataaaactgaaataaaatccTTTATTGGCTTACTCTACCTTGCTGGAGTATATAGAGTAAGTAGGTTAAGTTTAGATGAATTATGGAGCACTTCTGGAGATGGGATTGAAAAATTCCGGCTGGCTATGTCTTTACGCCGCTTCAGATTTCTTATGCGATGTGTTCGTTTTGACGACACACGAACCAGAGCAGAGAGACTTGAACACGACAATCTAGCGCCTGTAAGAGAATTGCTTGataaatttaacgaaaattCCAAAAGTTGTTATGTTTTGGGGGAATACGTATGTATCGACGAAAAGCTGGAAGCTTTTAGAGGGCGCTGCAAATTCAAGCAGTATATTCCATCAAAGCCCGCGAAATGCGGAATAAAAATGTATGCACTTGTTGATGCAAAACTTTTTTATACGTATACCTTGGAAGTGTATGCCGGAAAACAACCGAGTGGCCCTTTTCAAATTAGCAACAAACCGGCAGATGTTGTCAAACGCTTAGTCGAGCCGTTGTATGACACTGGTCGAAATGTAACGACTGATAACTGGTTCTCCAGTATAGATTTAATGCAGGAATTGAGAGAAAAGAAACTGTCTTTTGTTGGAACGCTAAAAAAGAATAAACCGGAAGTACCACCATTGTTGGTCAATTCGAAAAGAAGGCCTGAAGGGTCCAGCATATTTGCCTTCAGAGAAGAAGGAACCCTAGTTTCTTACATcccaaaaaagaataaaaatgtcCTTTTAATTTCCAGTCTACATTTTGATGACAAGGTAGATGTTGAAACAGGCCGCAAACGAAAACCGGAAATCATCAACTTTTACAACAAGACGAAAGGTGGTGTAGATATTGTAGATAAAATGTGTGCCACGTACAGTGTTGCTCGCAATGTGAGAAGATGGCCCATGGTTATTTTCTTTAGCATTTTAAACGTTTGTGGCATAAATGCAAGAATATTATACATGGGAAAGAATTTTGAAGTTAAGAGTAGACGTAAATTTCTACGTATATTAGCAAATGAGCTAATTGACGAGCATCTAATTCGGCGAAGCAAGAAAACCATAGGAATACCGAAAAATCTTCAaggaaaattggaaaattttagGCCACATACCTCTCAAGAAAATGTagaaccagaagagaatacccTCAAAAGAAAACGCTGTAACTATTGTTGGACCCCAAACAAAAAAACGAGATCAGAATTCGCATTTATCAATATGAAAGGCGAACCGATCGAAAAAGAGGGACTAACAGGAAATGTGACGTGCCTTATCTGCCTAAGGGTGTTCCAAAATGTTATGAGCTTAAGGAACCACAAGCGTTACCACCGTACGAAGCACCGCTGTGCCGCTTGCAACCAATTTTTCACGTCCATACGCGATTTGAGGAGCCACAAGTATAAAATGCACAAAAACATGTACACCTGTGACGTATGCGGCGGTGTTTTCGCCGGCTCCTACGAAATGAAGAAGCATCAACTTGAACACGACAGCACTCCGCCTTATAAGTGTGAAAGTTGCGAAAAGACCTTCAAGTCCGAGGCCACCCTAAAACTGCACCTGAGCACCCACGATGGGAATTATAAATTCTGGTGTGAGGTATGCGGCAAGGGTTTCCTCACCAAGCATTCCGCTGCGAGGCACAACGACTCCATACATCTGAATATAACGCACAAATGTGAGATATGCGGGAAAGCTTTCGCTCGTCTCGAGTACTTCAAAAAGCACATGCGATCGCACGACGCCAACCACGTCTCCCCCGTTTACACTTGCGCCACCTGCGGGGCTACATTTTCGTGGAGATCCGTGTGGCGCTTGCACCAAGAAAAACACATGGGGGTCAGCTACGTGTGCGAAGTCTGCGGGAAAACCTTGTCGTCGGCGGCTTCGCTCACCGTGCATACCAGGCGGCACACCGGTGAAAAACCGTACGTGTGCGAAACCTGCGGCAAGGGATTCATCAAGAAGCCGTTCTTGGACGTGCACATACGGGTGCATACCAAAGAGAAACCTTATATTTGCGGCTTTTGCAACAAGGGGTTTTCCCAGAAGGGGTCTCTCAATATTCACATGAGGACACACACCGGCGAAAGGCCATTTGTAATTCCCACGGACGTGCTTTTCAAGTTCTCCGACAAGTCTAAATACACGCACATCTTCCGCAAATTACCGCGGGTGCGCCCGGTAGAAGTCAAACACCAAATCAGACACTTTAATTTAACAGCAGCCGCAACGCAAGATGCGGCCCGCGCCCAAGTTCGCAGGCTCTGGGTGCAAATGGAGCACGGATACGCCATCACCTCACCGTTTGGACCTTACGAGTGCTGCATATGCAGGCAACCTTCTTATTTCGCCCACACTCTGAGAGCGCACCTGCTGGACCAGCATTTAACCAACGTGTGTTTGGTTTGTGGGTGCCAGTTTCACAGCACCAATTTGTACCACGAGCACAGAATTGCCTTCGGTTGCATGAGTGAGAACGAGCATTTGCTTTTGAGCGGATTGAAACTCCGACGCAACAACTGA
Protein Sequence
MAGRRLYRFDNEQDIEEMRRILMKESEDEDLEDQSEDEVNEERVEDSVTEQEASSGDSDVDDDVQFVGKDGETIWFKKQRFHKIRAQQHNIIRHLPGVTGPARNITGIYGTWKCLFDDAMLDIIVTYTNLYIDKIQSSFRRTRDAERTDKTEIKSFIGLLYLAGVYRVSRLSLDELWSTSGDGIEKFRLAMSLRRFRFLMRCVRFDDTRTRAERLEHDNLAPVRELLDKFNENSKSCYVLGEYVCIDEKLEAFRGRCKFKQYIPSKPAKCGIKMYALVDAKLFYTYTLEVYAGKQPSGPFQISNKPADVVKRLVEPLYDTGRNVTTDNWFSSIDLMQELREKKLSFVGTLKKNKPEVPPLLVNSKRRPEGSSIFAFREEGTLVSYIPKKNKNVLLISSLHFDDKVDVETGRKRKPEIINFYNKTKGGVDIVDKMCATYSVARNVRRWPMVIFFSILNVCGINARILYMGKNFEVKSRRKFLRILANELIDEHLIRRSKKTIGIPKNLQGKLENFRPHTSQENVEPEENTLKRKRCNYCWTPNKKTRSEFAFINMKGEPIEKEGLTGNVTCLICLRVFQNVMSLRNHKRYHRTKHRCAACNQFFTSIRDLRSHKYKMHKNMYTCDVCGGVFAGSYEMKKHQLEHDSTPPYKCESCEKTFKSEATLKLHLSTHDGNYKFWCEVCGKGFLTKHSAARHNDSIHLNITHKCEICGKAFARLEYFKKHMRSHDANHVSPVYTCATCGATFSWRSVWRLHQEKHMGVSYVCEVCGKTLSSAASLTVHTRRHTGEKPYVCETCGKGFIKKPFLDVHIRVHTKEKPYICGFCNKGFSQKGSLNIHMRTHTGERPFVIPTDVLFKFSDKSKYTHIFRKLPRVRPVEVKHQIRHFNLTAAATQDAARAQVRRLWVQMEHGYAITSPFGPYECCICRQPSYFAHTLRAHLLDQHLTNVCLVCGCQFHSTNLYHEHRIAFGCMSENEHLLLSGLKLRRNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-