Dhop036799.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:77444984-77454497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.002 0.23 13.5 0.2 1 23 42 64 42 64 0.98 2 19 0.00025 0.028 16.3 1.1 1 23 70 92 70 92 0.96 3 19 0.0022 0.25 13.4 1.2 1 23 98 120 98 120 0.97 4 19 0.00022 0.024 16.6 4.3 1 23 126 148 126 148 0.99 5 19 0.00019 0.021 16.7 1.6 1 23 154 176 154 176 0.98 6 19 0.091 10 8.3 0.1 2 23 184 205 183 205 0.94 7 19 0.0072 0.8 11.8 0.1 1 23 211 233 211 233 0.98 8 19 0.00091 0.1 14.6 0.9 1 23 239 261 239 261 0.98 9 19 2.4 2.7e+02 3.8 9.1 2 23 357 378 356 378 0.96 10 19 2.9 3.2e+02 3.6 2.4 2 17 385 400 384 401 0.93 11 19 0.012 1.4 11.0 3.1 1 22 450 471 450 471 0.94 12 19 0.00012 0.013 17.4 0.3 1 23 478 501 478 501 0.96 13 19 1.4e-05 0.0016 20.3 2.7 1 23 507 529 507 529 0.99 14 19 0.003 0.33 13.0 4.5 1 23 535 558 535 558 0.98 15 19 1 1.1e+02 5.0 2.5 2 23 572 594 571 594 0.91 16 19 0.00052 0.058 15.4 2.4 1 23 600 622 600 622 0.99 17 19 0.024 2.6 10.2 0.2 1 23 628 650 628 650 0.97 18 19 3 3.3e+02 3.5 1.6 1 20 656 675 656 678 0.93 19 19 0.0073 0.81 11.7 5.4 1 23 684 706 684 706 0.99
Sequence Information
- Coding Sequence
- ATGCAGGATATCGCAGGATATTGCGCCGCCGCAAGTAAGCACACTCTTTGGTTACCTTTGTATTACCTACGCATTCAGTGgcAAAGGCACAAGAAAAAACCCCCCAGGAGCAACGAGAAGAATTTCGAATGCCCCGTTTGCGATTACAAAGCCAAAGCGCTTCAGAACTTAAAAGTACACTTGATGAAGCACACGGGCGAAAAGCCTTTTGCCTGCCCCGACTGTGACTTTAAAAGCACGACATCCGACAGTTTGAGGCGGCATAGTTTCACGCACAGCGGAGAAAAGCCGTTCCAGTGCgaactttgcgattataaagcGGTGTCTGCGTCACACTTGCGATCACATTCTCTGAGACACAGCGATGAGAGGCCGTACCAATGCGAACTCTGCGACTACAAGTGCAAGAAAACTGGGAACTTAAAGACGCACATGCTTAAGCACACCGGTGAAAAACCGTATAAGtgcgacctttgcgattatagatgcAATCAGGCCGGGAACTTGAGGATACACTCGAAGGTTCACACCCGCGTTAAAAAACAACTGGAGTGTGacgtttgcgattataagtgtgGCTCGGCCATTAACATGAAGGTGCACGTCGCGTTGCACAGGGGAGAGAAACCGTTTAAATGTGACATGTGCGATTTTGCGAGTTCCACGCTGGGATCTGTGAGGGCGCACGCGCTGACGCACACAGACGAAAAACCGTTCGAATGCGAGATTTGCGGCTCCAAGTATTACACGTCAGCGCGCTTAAAGAAGCATACCCTATCGCATGCTAGTGATAATGATAAACCGTTTAAATGTAACCAGTGCAATTACAGGGAACGTGGAACTtacaagtgttcgaaatgcacGTTCGCCGCAGTTACCAGACCGATTCTGTCATTCCACAAGAAGGAGAAGCATCCATCCAAATTGCAGTTCGAGCACCTTGGTATTTATGAAAATCAGTCGGGGGTGACCAAACAAAAGCACTGTCTCGAATGCGACTTCTTTTGCTTGAACACCAAGACGATGAACGAACACACGAGGTCAAAGCATCCCGTCCAGTTAGTCCTGCATTGTAACGTGTGCAGTTTCCAGTGTTGCAAGAAGGGAACAATGAAGAGGCACCTCAACACTCACGACGAGTTGAAAGTCGTGAAATGCAATTTCTGCGATTATAAGTGCATAAAACGCAGTACATTGAGgacATTAAATGCCCTCTCTTGGTGCTgggatttaataaaaaaagaagtggAAACACAAAGCCCCGATTCAGGAACCGACGTACCGTACGATTTCCACCTCAAAGTGAAAGCAGAGGCGGATTTGGAACCTGAAACGCTCGGGGAATCCTTTCGGTGCAAAAACTGCAAACGGGTCTTCTTCTCTTCGGCGCGCTTGAAAGAACACGTGTGCACGCGCACCGGCGAAAAACCGTACCAATGCAATCGTTGCGATTTTAGATTTAGTTCCCTGGCGGAACTGAGCGAGCACATCAAGGCCGTCCACGTCGCCGAAAAGGTTTACAGATGCAGCGTTTGCCAGCACGTTTTTTGCAGCCCCGAGGGTCTGAAAGTGCACATCCGTAGACACACAGGCGAAAAACCGTATAAGTGCACGCTTTGTAATTACTGCAGCGCCCATTCCAGCGGGTTAAAAGGGCACATGCTCAAGTACCATCCCGACGAAATTCCGCCGAAAGTGCGCGGCACGTCTTTAAACTGCAAACATTGCAGTTACATCGGCAGGACAACGCAAGAATTCAAAAAGCATTACACCGAAGTACATCCGGGCCAGAAGCCTTACAAATGTACATTCTGTGATTACCGTAGTGTTCTACGTGATACTCTGAGGAAACACATGAATTCGCACGCGAACGAAACTATTTACGCATGCAGCGCGTGCGATTTCAAAAGCATCTCGCCCGAAGAGCTAAGAAAACACAACCAAACGCACGTCATAGAGAAACCGTTCCAGTGTGGAATCTGCATGTACAAGTGTGCAACATACAGTAGATTACAAGAACACACGTGGATGCATAGTGGCATGAAACTTTTTAAGTGCGACTTATGTAGGTATCAGTGCGTTTCTGTGGGGCACCTCAAAAGGCATATGTATACCCATACAAACCCTACGAATCCCAGTCATTAG
- Protein Sequence
- MQDIAGYCAAASKHTLWLPLYYLRIQWQRHKKKPPRSNEKNFECPVCDYKAKALQNLKVHLMKHTGEKPFACPDCDFKSTTSDSLRRHSFTHSGEKPFQCELCDYKAVSASHLRSHSLRHSDERPYQCELCDYKCKKTGNLKTHMLKHTGEKPYKCDLCDYRCNQAGNLRIHSKVHTRVKKQLECDVCDYKCGSAINMKVHVALHRGEKPFKCDMCDFASSTLGSVRAHALTHTDEKPFECEICGSKYYTSARLKKHTLSHASDNDKPFKCNQCNYRERGTYKCSKCTFAAVTRPILSFHKKEKHPSKLQFEHLGIYENQSGVTKQKHCLECDFFCLNTKTMNEHTRSKHPVQLVLHCNVCSFQCCKKGTMKRHLNTHDELKVVKCNFCDYKCIKRSTLRTLNALSWCWDLIKKEVETQSPDSGTDVPYDFHLKVKAEADLEPETLGESFRCKNCKRVFFSSARLKEHVCTRTGEKPYQCNRCDFRFSSLAELSEHIKAVHVAEKVYRCSVCQHVFCSPEGLKVHIRRHTGEKPYKCTLCNYCSAHSSGLKGHMLKYHPDEIPPKVRGTSLNCKHCSYIGRTTQEFKKHYTEVHPGQKPYKCTFCDYRSVLRDTLRKHMNSHANETIYACSACDFKSISPEELRKHNQTHVIEKPFQCGICMYKCATYSRLQEHTWMHSGMKLFKCDLCRYQCVSVGHLKRHMYTHTNPTNPSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -