Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72208254-72230112[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0016 0.18 13.8 0.9 1 23 10 32 10 32 0.98

2 25 0.85 94 5.2 7.7 2 23 38 59 37 59 0.96

3 25 0.015 1.7 10.7 0.8 1 23 65 87 65 87 0.98

4 25 0.0017 0.19 13.7 1.7 2 23 94 115 93 115 0.96

5 25 0.031 3.4 9.8 3.7 1 23 121 143 121 143 0.98

6 25 0.98 1.1e+02 5.1 4.5 3 23 150 170 148 170 0.95

7 25 0.0051 0.56 12.3 3.4 1 23 176 198 176 198 0.98

8 25 0.073 8.1 8.6 1.1 2 19 205 222 204 224 0.95

9 25 0.00063 0.07 15.1 0.7 2 23 446 467 445 467 0.97

10 25 0.029 3.2 9.9 3.8 3 23 475 495 473 495 0.98

11 25 0.0014 0.15 14.0 0.3 1 23 501 523 501 523 0.98

12 25 0.0016 0.18 13.8 5.5 1 23 529 551 529 551 0.98

13 25 2.1 2.3e+02 4.0 2.6 1 23 557 579 557 579 0.96

14 25 0.39 43 6.3 2.4 3 21 587 605 585 606 0.94

15 25 0.056 6.2 9.0 0.0 2 23 619 640 618 640 0.95

16 25 0.003 0.33 13.0 5.4 1 23 646 668 646 668 0.98

17 25 0.0034 0.38 12.8 1.4 3 23 676 696 674 696 0.97

18 25 0.036 4 9.6 6.0 1 23 702 724 702 724 0.98

19 25 0.0011 0.13 14.3 0.2 2 23 760 781 759 781 0.97

20 25 0.31 34 6.6 1.5 2 23 788 809 787 809 0.96

21 25 0.066 7.3 8.8 6.1 1 23 816 838 816 838 0.98

22 25 0.0013 0.14 14.2 4.9 1 23 844 866 844 866 0.98

23 25 0.21 23 7.2 1.3 1 23 872 894 872 894 0.98

24 25 0.014 1.6 10.9 2.1 3 23 916 936 914 936 0.96

25 25 0.14 16 7.7 0.2 2 23 943 964 942 964 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0016	0.18	13.8	0.9	1	23	10	32	10	32	0.98
2	25	0.85	94	5.2	7.7	2	23	38	59	37	59	0.96
3	25	0.015	1.7	10.7	0.8	1	23	65	87	65	87	0.98
4	25	0.0017	0.19	13.7	1.7	2	23	94	115	93	115	0.96
5	25	0.031	3.4	9.8	3.7	1	23	121	143	121	143	0.98
6	25	0.98	1.1e+02	5.1	4.5	3	23	150	170	148	170	0.95
7	25	0.0051	0.56	12.3	3.4	1	23	176	198	176	198	0.98
8	25	0.073	8.1	8.6	1.1	2	19	205	222	204	224	0.95
9	25	0.00063	0.07	15.1	0.7	2	23	446	467	445	467	0.97
10	25	0.029	3.2	9.9	3.8	3	23	475	495	473	495	0.98
11	25	0.0014	0.15	14.0	0.3	1	23	501	523	501	523	0.98
12	25	0.0016	0.18	13.8	5.5	1	23	529	551	529	551	0.98
13	25	2.1	2.3e+02	4.0	2.6	1	23	557	579	557	579	0.96
14	25	0.39	43	6.3	2.4	3	21	587	605	585	606	0.94
15	25	0.056	6.2	9.0	0.0	2	23	619	640	618	640	0.95
16	25	0.003	0.33	13.0	5.4	1	23	646	668	646	668	0.98
17	25	0.0034	0.38	12.8	1.4	3	23	676	696	674	696	0.97
18	25	0.036	4	9.6	6.0	1	23	702	724	702	724	0.98
19	25	0.0011	0.13	14.3	0.2	2	23	760	781	759	781	0.97
20	25	0.31	34	6.6	1.5	2	23	788	809	787	809	0.96
21	25	0.066	7.3	8.8	6.1	1	23	816	838	816	838	0.98
22	25	0.0013	0.14	14.2	4.9	1	23	844	866	844	866	0.98
23	25	0.21	23	7.2	1.3	1	23	872	894	872	894	0.98
24	25	0.014	1.6	10.9	2.1	3	23	916	936	914	936	0.96
25	25	0.14	16	7.7	0.2	2	23	943	964	942	964	0.97

Sequence Information

Coding Sequence: ATGCTGATACATACCGGtgaaaagccgttcagttgtgatctctgcgattacaaaGCCCGAATGTACGGAACTTTGAAGCGTCACATGCTGACGCACACCGCAAAGACGTTGAGCTGCGACGTTTGCGACTATAAATGCCGACATTCCCACAGCATGAGACTGCACAAATTGAAACATATCGACGGGAAAGGGTTCAGTTGCGGTCTTTGCGAGTACGAATGCCAACAAGTGGGAGATTTGAGAAAGCACATGTCAATACACGCCGACGAAAAACTGTTACGTTGTGACGTTTGCAGTTACGAATGCCGACAATCGAGGGATTTGAAACGGCACGTACTAATTCACACCGACGTGAAAATATTCAGTTGCgatctctgcgattacaaaGCCCGACTGCACGGAACCTTGAAGCATCACATGCTGACGCACACCGAAAAGTCGTTGAATTGCGACGCTTGCGACTATAAGTGTCGACATCCCTACAGTATGAAACTGCACAAATTGAAACATACCGACGAGAAACGGTTCAGTTGTAGTGTTTGCGAGTACAAATGCCAACAAGTGGGACATTTGAAAAGGCACATGATAATACACACCGACGAAAAACTGTTACGTTGTAATGTTTGCAGTTACGAATGCCGAAAAGCGAGAGATTTGAAACGACACAGTATAGGATCAAGAGGGGTGTTCTTAGAACAACCCGGGAAGAGGTTCTCCATAAACCGGCCGAGTGCCACTAGCAAGgcacttcaaatcctgctgccgaacaggccagaacgaaggctcttgctactgctgccgaataggctagaacgcaaacttcaaatcctgctgccgcTGAATAAGCCAGGACAAAATATCAGCCCCTACGGTGTAAGGTCTGAGCAACACACCGCCAGATTCCAAGTCGCATCTCGAAGAACCACGAAGCTGGCGCCGACACCGGTACCACGTGGGCAGAAGAAGGCGACCATCAAGAGGAGTCGTTACCGGAGACATCAGCATCGACAGGAACTCCGGGACACATTGTCAGAAGCTCGCTTTCCCCGAGCAGTGTCCCCCTTACCGCCGTCGCCGCAACGAGGACCCGCCATCGCGTCAGAGACTGAAGGTTACACTGgaccataccgactgatccctctAACGGTACCTCCACCGACGTACCACGAGGTATCACGCGCCCAGGTCCACCTATTAGATCCACGTCTTCCCATGGTACAACGCGACTACGCCAAGTACCAATGGGGAGCACCTGGGAATAAAATTACGGACGAAATAACCTGCGGTTCCGAATTTAAACCGCAGGCACCTTTACATACAGACGAAAAGCTGCTGAGATGTGTCGTGTGCGACTACAAAGCTCGGACCTCTTGGAAACTGAAACGTCACATGTTAACACACActgacgagaaaccgttcggttGCGACCACTGCACCTACAAATGCAGACAAGGCGGACAACTGAAAACGCACATGctgatacacaccggcgagaaaccgttcaagTGCGGTTTGTGTGATTATAGGTCCCGCGCATCTGCGGACTTGAAACGTCACCTATTagtgcacaccggtgagaagccgtttagCTGCGAACtgtgcgattataagtgccgacaGAAAATAAGTTTGAAACATCACATGGTAACacacacgggcgagaagccgttcagctgtgatCACTGCGCTTACAAGTGTGGACAAATCGCAATTTTGAAGAGGCACTTGCTAACACACACCGACGTGAAGCCTTACGGCTGCGACGTTTGCAGCTACAAATGCCGACAGTACGCGAGTTTAAAAATGCACATATGCCAGCGGATTTACGAAACGAAAATTATGAACGCAATGGACGAGTGCCTTCTCTGCGGCAACAAATTTCAAGACCCGGAAGTATTGAAGCAACACATACTAGCGCACGAGGTATTTAAGCCGTACAGTTGTGACTTTTGCGATTACAGATGCCGACGGAACGGGCAGATGAAAAGACACAGGCTGagacacaccggcgagaagccgtttggttgcggtctttgcgattatagatgTCGAGATCTTTACagtttgaagcagcacatgGTGATGCACGTCGAAGGGAAACCGTTCAGCTGTGATCGTTGCGATTACAAAAGCCGACGAATGTGTAATTTGAAAAGGCACAGGTTGAGGCACTCCGACGAGAAGCCATACCAACGAAATAAACTAGCCTGCGGTTCCAAATTTAAATCGCGGGGAACTTTACGGAAGAAAGCGCGGAGAAAAACTGAAAAGCTGCTCAGGTGTGCTGTGTGCGATTATAAGGTCGGGGACTCTTGGAAACTGAAGCGTCACATGTTGACGCACACGGGCGAAAAGCCGTTGATTTGCggcctttgcgattataaatgtcgacaaGATCCGAAGATGAAACTGCACATGTTGAAACACACGGGCGGCGAGAAACCATTCAGTTGCAAATTCTGTGATTACAGGTGCTGTCAAGCTGTGAATATGAGAACGCATGAGCTAACTCATAcaggcgagaagccgttcagctgtgatCGTTGCGGTTACAAGTGCCGACAGTCCACGCGTTTAAAGCAGCACATGCTGACGCACGGCGGCGAGAAACGATACAGCTGTAATTATTGCGCTCACAGGTCCAATTACGCTGCACAGATGAGGCTTCACGTTTTAACACATACCGCCCAAAAGTCGACTGGTTCTGATAAATGTCGGGAATCCCCAAAACCCAAGCTGTTCGGCTGTGGCCTTTGCAATTATAAGGGTCGACAATCCTCACATTTGACGTTGCACATGCAGTttcataccggcgagaagccggtCAGATGTGGCCTTTGCGATTTCAAGTCTCAACAACTCGCGGATTTGACGATGCACGTGCAAACTcataccgacgagaagccgGGTTAA
Protein Sequence: MLIHTGEKPFSCDLCDYKARMYGTLKRHMLTHTAKTLSCDVCDYKCRHSHSMRLHKLKHIDGKGFSCGLCEYECQQVGDLRKHMSIHADEKLLRCDVCSYECRQSRDLKRHVLIHTDVKIFSCDLCDYKARLHGTLKHHMLTHTEKSLNCDACDYKCRHPYSMKLHKLKHTDEKRFSCSVCEYKCQQVGHLKRHMIIHTDEKLLRCNVCSYECRKARDLKRHSIGSRGVFLEQPGKRFSINRPSATSKALQILLPNRPERRLLLLLPNRLERKLQILLPLNKPGQNISPYGVRSEQHTARFQVASRRTTKLAPTPVPRGQKKATIKRSRYRRHQHRQELRDTLSEARFPRAVSPLPPSPQRGPAIASETEGYTGPYRLIPLTVPPPTYHEVSRAQVHLLDPRLPMVQRDYAKYQWGAPGNKITDEITCGSEFKPQAPLHTDEKLLRCVVCDYKARTSWKLKRHMLTHTDEKPFGCDHCTYKCRQGGQLKTHMLIHTGEKPFKCGLCDYRSRASADLKRHLLVHTGEKPFSCELCDYKCRQKISLKHHMVTHTGEKPFSCDHCAYKCGQIAILKRHLLTHTDVKPYGCDVCSYKCRQYASLKMHICQRIYETKIMNAMDECLLCGNKFQDPEVLKQHILAHEVFKPYSCDFCDYRCRRNGQMKRHRLRHTGEKPFGCGLCDYRCRDLYSLKQHMVMHVEGKPFSCDRCDYKSRRMCNLKRHRLRHSDEKPYQRNKLACGSKFKSRGTLRKKARRKTEKLLRCAVCDYKVGDSWKLKRHMLTHTGEKPLICGLCDYKCRQDPKMKLHMLKHTGGEKPFSCKFCDYRCCQAVNMRTHELTHTGEKPFSCDRCGYKCRQSTRLKQHMLTHGGEKRYSCNYCAHRSNYAAQMRLHVLTHTAQKSTGSDKCRESPKPKLFGCGLCNYKGRQSSHLTLHMQFHTGEKPVRCGLCDFKSQQLADLTMHVQTHTDEKPG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -