Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065426.1:46870547-46872442[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.3e-05 0.0037 19.1 0.5 2 23 255 276 254 276 0.98

2 10 0.004 0.44 12.6 1.3 2 23 283 304 282 304 0.96

3 10 2e-06 0.00022 22.9 2.6 1 23 310 332 310 332 0.98

4 10 0.00061 0.068 15.1 0.3 2 23 339 361 338 361 0.93

5 10 0.00012 0.013 17.4 2.4 3 23 368 388 367 388 0.98

6 10 0.00014 0.015 17.2 1.2 1 23 397 420 397 420 0.97

7 10 0.0014 0.16 14.0 1.4 1 23 428 450 428 450 0.97

8 10 4.7e-06 0.00052 21.8 1.4 2 23 457 478 456 478 0.98

9 10 1.4e-05 0.0015 20.3 3.2 1 23 484 506 484 506 0.99

10 10 0.01 1.1 11.3 1.9 1 23 512 535 512 535 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.3e-05	0.0037	19.1	0.5	2	23	255	276	254	276	0.98
2	10	0.004	0.44	12.6	1.3	2	23	283	304	282	304	0.96
3	10	2e-06	0.00022	22.9	2.6	1	23	310	332	310	332	0.98
4	10	0.00061	0.068	15.1	0.3	2	23	339	361	338	361	0.93
5	10	0.00012	0.013	17.4	2.4	3	23	368	388	367	388	0.98
6	10	0.00014	0.015	17.2	1.2	1	23	397	420	397	420	0.97
7	10	0.0014	0.16	14.0	1.4	1	23	428	450	428	450	0.97
8	10	4.7e-06	0.00052	21.8	1.4	2	23	457	478	456	478	0.98
9	10	1.4e-05	0.0015	20.3	3.2	1	23	484	506	484	506	0.99
10	10	0.01	1.1	11.3	1.9	1	23	512	535	512	535	0.97

Sequence Information

Coding Sequence: ATGAATAACGAAATAATGCAGTTATGTAGACTGTGTTTAGTTAAAGACCAAGCAGACATTCCTATTTTCACAGAACAAGATAACAgacaaattttaaagaaaattacagCTTGTCTATCAATTTCGGTTTCTCAAGATGATAGTTTGCCCAAGAAAATATGTGTCTCTTGTCTGGATAAACTGGATTCATTCTATCACTTCTGGAATACGACTGCGAATGTAGAGAAACAGCTACTAACATGGCTAGAACAACCTTCTGCAGAAACAGAATTCAAGATACAAGAAGAACTGCATTCCATCAAACAGGAAGAGTTAGATCCTCTGGAACACTTACCTCTAAATACACATGAGAATTTTGTTTCGTGTTCTACACAAGCACCTACAGGCTTTCACTTTCAAGGGGAGTTTAGCGAGTCTCAGATAGAATTTCACAACGTGAAGGTCGAAGGATTTCAAAACAAcgatttcgaaaaaatatacaagAGTTGTACACCTACAGAAATGCAGACACAAGTTGTCCCCAAATTCTCTGTAAATGGTGTCAAGACATACATAGAGGAAGAGTTTTACAAATCTCCATCAGCAACAACTGTTAAGACAGAAAAGGATAATCAAACTAAGAACTCAGAACACATTGATAGGAATCCTCAAATAAGTGAAATATTGGATAAGAAATCAGAGATGCAAAATTTTGgCCCTGAAACTAAGGTTGCTGTGTTCGGGAAAGAGGCACCTACGTTCTTTCAAATACCAAGTACTGGACAATGCCATATTTGTGGAAAGATTTTCCTGCGAAGAGGTGGTTTAAAACAACACATGTTGGTTCATACGGATGAAAGACCAATATCTTGTGACATCTGTTTTAAAGGTTTTAAGGACAAATTCACGATGCAAGGTCACAGAAAATACCACAGCGATGAAACACCATTCAAGTGCGATACATGTGATAAGACTTTTAAGCGTAAAATCTCTTTGCAAGTGCATGAAAAACGCCACATTAAGGATTACAAGATGATGTGTGAAATTTGTAACAGAGGATTTTATACAAATGCCGAATACAAGCTGCATATGGGTTCTAGGCATGGTCAGAGTAGTAATATTTGTTCTATTTGCAACAAAGCTCTGTATGATAAGTGTAGCTTGAACAAGCATATGCAGACACATGTGGAGGGTTACAAAGAGCCTAAGTACAAATGTGATTTGTGCGGAAAAAGTTTCTTGCAGGAGAgatatcttaaaaatcacattgaTAAGCAGCATTCTGATGGCTCGAGGAGAGAGTATGTCTGTGACCTTTGCGGAAAGAAGCTTTGTTCTGGAACAAGTTTAAGGACACATCAATTATTGCATCAAGGTATTAAGCCCAATAAGTGTCACACTTGTGGGAAAGCCTTCACTTTAAGATCAGCTTTGATGGATCATTTACGTATACATACAGGTGAAAAACCTTATAAATGTGAACATTGCAATAAAGCTTTTACACAGAGGAACACTTATGTTATTCATGTGCGGTCTCATACTGGTGAAAGGCCGTATGTATGTCAGTTATGTAACACTGGTTTTATAAGTCGGACTGTATTAAATCTACATCACAAAAGTAAACACAACTTGTTATAA
Protein Sequence: MNNEIMQLCRLCLVKDQADIPIFTEQDNRQILKKITACLSISVSQDDSLPKKICVSCLDKLDSFYHFWNTTANVEKQLLTWLEQPSAETEFKIQEELHSIKQEELDPLEHLPLNTHENFVSCSTQAPTGFHFQGEFSESQIEFHNVKVEGFQNNDFEKIYKSCTPTEMQTQVVPKFSVNGVKTYIEEEFYKSPSATTVKTEKDNQTKNSEHIDRNPQISEILDKKSEMQNFGPETKVAVFGKEAPTFFQIPSTGQCHICGKIFLRRGGLKQHMLVHTDERPISCDICFKGFKDKFTMQGHRKYHSDETPFKCDTCDKTFKRKISLQVHEKRHIKDYKMMCEICNRGFYTNAEYKLHMGSRHGQSSNICSICNKALYDKCSLNKHMQTHVEGYKEPKYKCDLCGKSFLQERYLKNHIDKQHSDGSRREYVCDLCGKKLCSGTSLRTHQLLHQGIKPNKCHTCGKAFTLRSALMDHLRIHTGEKPYKCEHCNKAFTQRNTYVIHVRSHTGERPYVCQLCNTGFISRTVLNLHHKSKHNLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -