Dhop036395.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:72337828-72349295[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.005 0.56 12.3 4.8 1 23 215 237 215 237 0.97
2 18 3.5e-05 0.0039 19.0 1.1 1 23 243 265 243 265 0.99
3 18 0.00012 0.013 17.4 0.7 1 23 271 293 271 293 0.98
4 18 0.0025 0.28 13.2 1.0 1 23 299 321 299 321 0.98
5 18 0.015 1.7 10.7 5.9 1 23 327 349 327 349 0.98
6 18 0.00055 0.061 15.3 1.2 2 23 356 377 355 377 0.97
7 18 0.035 3.9 9.6 4.0 1 23 383 405 383 405 0.98
8 18 0.048 5.3 9.2 1.8 1 23 411 433 411 433 0.99
9 18 0.11 12 8.0 4.4 1 23 483 505 483 505 0.98
10 18 5.7e-06 0.00063 21.5 1.0 1 23 511 533 511 533 0.98
11 18 0.019 2.1 10.4 3.8 1 23 539 561 539 561 0.98
12 18 4.8e-05 0.0053 18.6 1.2 1 23 567 589 567 589 0.98
13 18 0.081 8.9 8.5 0.4 3 23 597 617 595 617 0.98
14 18 0.0092 1 11.4 2.7 1 20 623 642 623 645 0.94
15 18 0.02 2.2 10.4 7.5 1 23 651 673 651 673 0.98
16 18 0.00061 0.068 15.1 1.2 1 23 679 701 679 701 0.99
17 18 0.0002 0.022 16.7 1.3 1 23 707 729 707 729 0.98
18 18 0.0008 0.088 14.8 2.5 2 23 734 755 733 755 0.97

Sequence Information

Coding Sequence
ATGTGCTCCTTAGAAGAGAATTATGTAAAAGCGGATTTAAGTAATCTTTCGCAGGTCGACATTATAATGtcgataccgaccacccccgagaaaaatcccgagtgcggttcgaaccgacgaccatgcgattgcaaggccggtcctctcaccactggaccgttcaggcgtttgataaataaagataataTTAGCTCAGAAATGAGAGGAGTTAAACTACAAAGatcTGGCAGGCAAGAATACGGTGATTCCGCTATAGGGTACGTTCAGCTATTCAGAAAACAAAATCTATGCTATTTGAAAGCTAAAATTACACCCGAACATAAAATAAAGTCAAGAAATTATAACATAACAAGTATTATTGATGAAAATGATAGAAAAATTCTGGTTGTTCAATGTCACGATTGTCCTGCTGCGTCCCAGGGTGGATGTGAACAAGCTGTTGCGTTTTTGATGTGGTCACATCGTCGAAGCGAAGAACCTTCGCCTACTGATTGTGAGACAGTTTGTTACTGGAAAAGGTGCCTTAGAGATTCTAAACCGACAATTCCGGACATAGGGACACCTGAACGTGGCATGTGTGATTCCGATCAGTGTATACCCAACCCCGAATATAGTAGACTGTTATCTAATGGCGTGAAACTATACGTTTGCAACcactgcgattataaatgccaacCGAAGAGTAACATGAAACGACACGTCACGATCCATTCCAGCGAGAGGCCTTTCACCTGTGAgatttgcaattataaattcCGAGTCGACGGATACCTGAAACAGCACATGTTgacgcacaccgacgagaagcatTTCGTTTGCGATCGTTGCGGTCACAAATTCCGCGCGGCCGCAGCCTTAAGGCAGCACATGCTGAAACATGTCGGCGAGAAACTGTTTAGTTGTGATCTGTGCGCTAAAAGGTTTCTAAACTCTGGAAATTTGAGCAGGCACAAGCtaacgcacaccggcgagaagcggTTCAAGTGTGAATTTTGCGATTACAGATGTCAACGCTTGGAATACCTGAAAAGTCACATGTTCAAGCACAAGGGTGAAAAACCGATCAAGTGCGCCCTCTGCGATTTTAAATGCGCAAAGCCAGCCTACCTGAGGAggcacatgttaacgcacaccGGTGAAAAACGCTTCAAGTGCCACCTTTGCAGTTACGAATGTAACCGGTCCGAAGGTTTGGGGCAACATCTTTTAAAGCATTCCGATGAGAGGCCGTTTAAGTGCGAACGTTGCGAATTTGCGAGCAAAACGGCAAGATATTTAAAATTCCACATGCGAGTGCATTCGGACGAGAAACCGTTTAAATCCTCTGGGATTTCCAAATCTACACTTTTGGACTTGTTGCTACAAGAACCTCGCACAAGTGGTTCCGATTTTAAATCTCTCGAGTACGTACCCAAATACATACTGTCACCTAACGGTGTGAAGCAATTCgtttgcgatctttgcgattataaatgccaacAAAGCCGACGCATGAAACAGCACAGGAGGATCCATTCTAGTAAGAAGCCTTTCGTTTGTCAGACTTGCAATCGTAAATTCCGTTTCGCCGGAAACTTGACGCAGCATATGTTGGTACACTCTGACAAGAAGAAGTTCGTTTGCGATCGTTGCGGTTACAAATGCCACATGATTGGATCTCTAACGCGGCACATGCTAAGACATACcggtgagaaaccgttcagttgtgatctgtGCACTCGAAAATATCAGCAGCCTGTAAGTTTGAAAAGGCACATGTTAACACACAACGGCGAGAGGACGTTCGGTTGTGAATTTTGCGATTACAAAGGTCGAAGTTTAGAAGATGTGAAACGCCACGCGAAAACACATAACAGCGAAAAACCGTTCAGATGTACTCTCTGCGATTTTAAGTGCGCGCGACCTGTATATTTGAAACGACACCTGTGgaggcacaccggcgagaaaagCCACAAATGTCACATTTGCAGTCACGAATGCAGTCTGGCGTCAAATTTGAGGTTGCACTTATTAACGCACACCGACGAGAGGCCGTTTAAGTGCGAACGTTGTGAATTTGCGAGCAAAACGGCAAGATATTTAAAGTTACACATGCGAGTGCATTCGGATGAAAAGCCGTACAAGTGCGACCTTTGCAAATACGCGACTAAGTTTCAAGGTAATCTACAGAAACACCTCACGATTCACGAGAATCTGCTCAAGTGTAATGTTTGTGAGTACACGTGTAAATTAGCGAGGGACTTAAAAAAGCATATGTTATCACATGCAGGTGAGATTTCTTCTTGA
Protein Sequence
MCSLEENYVKADLSNLSQVDIIMSIPTTPEKNPECGSNRRPCDCKAGPLTTGPFRRLINKDNISSEMRGVKLQRSGRQEYGDSAIGYVQLFRKQNLCYLKAKITPEHKIKSRNYNITSIIDENDRKILVVQCHDCPAASQGGCEQAVAFLMWSHRRSEEPSPTDCETVCYWKRCLRDSKPTIPDIGTPERGMCDSDQCIPNPEYSRLLSNGVKLYVCNHCDYKCQPKSNMKRHVTIHSSERPFTCEICNYKFRVDGYLKQHMLTHTDEKHFVCDRCGHKFRAAAALRQHMLKHVGEKLFSCDLCAKRFLNSGNLSRHKLTHTGEKRFKCEFCDYRCQRLEYLKSHMFKHKGEKPIKCALCDFKCAKPAYLRRHMLTHTGEKRFKCHLCSYECNRSEGLGQHLLKHSDERPFKCERCEFASKTARYLKFHMRVHSDEKPFKSSGISKSTLLDLLLQEPRTSGSDFKSLEYVPKYILSPNGVKQFVCDLCDYKCQQSRRMKQHRRIHSSKKPFVCQTCNRKFRFAGNLTQHMLVHSDKKKFVCDRCGYKCHMIGSLTRHMLRHTGEKPFSCDLCTRKYQQPVSLKRHMLTHNGERTFGCEFCDYKGRSLEDVKRHAKTHNSEKPFRCTLCDFKCARPVYLKRHLWRHTGEKSHKCHICSHECSLASNLRLHLLTHTDERPFKCERCEFASKTARYLKLHMRVHSDEKPYKCDLCKYATKFQGNLQKHLTIHENLLKCNVCEYTCKLARDLKKHMLSHAGEISS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-