Dhop036374.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:72081898-72086697[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.4e-05 0.0027 19.6 0.7 1 23 10 32 10 32 0.97 2 21 0.0052 0.58 12.2 4.1 1 23 38 60 38 60 0.97 3 21 2.1 2.3e+02 4.0 0.6 3 23 68 88 66 88 0.90 4 21 1.4 1.5e+02 4.6 0.2 1 23 92 114 92 114 0.93 5 21 0.00077 0.085 14.8 8.0 1 23 120 142 120 142 0.98 6 21 0.0041 0.45 12.5 1.8 1 23 147 169 147 169 0.98 7 21 0.11 12 8.0 4.4 1 23 175 198 175 198 0.96 8 21 0.027 2.9 10.0 1.9 2 23 203 224 202 224 0.97 9 21 5.6e-05 0.0061 18.4 1.2 3 23 274 294 274 294 0.99 10 21 0.0037 0.41 12.7 2.8 1 23 300 322 300 322 0.98 11 21 0.034 3.7 9.7 3.4 1 23 329 351 329 351 0.98 12 21 3.6e-05 0.004 19.0 0.9 3 23 359 379 357 379 0.98 13 21 0.0012 0.14 14.2 0.9 1 23 385 407 385 407 0.97 14 21 0.0035 0.38 12.8 1.8 3 23 415 435 413 435 0.98 15 21 0.0071 0.78 11.8 2.6 1 23 441 463 441 463 0.98 16 21 0.0037 0.41 12.7 1.2 1 23 470 492 470 492 0.98 17 21 0.0093 1 11.4 0.7 1 23 502 524 502 524 0.98 18 21 0.027 2.9 10.0 1.1 1 23 530 552 530 552 0.98 19 21 9.6e-05 0.011 17.7 3.9 1 23 558 580 558 580 0.98 20 21 0.0051 0.57 12.2 3.2 1 23 586 608 586 608 0.97 21 21 3.3e-05 0.0037 19.1 3.7 1 23 614 636 614 636 0.98
Sequence Information
- Coding Sequence
- ATGGTGAGACACAACGATGAAAAACCGTTCAGATGTgtcctttgcgattacaaattcAAAACGCCCGAACTTTTGAAGCGCCACGTATTACTGCACGGCAACGTGAGGCAATTCAGCTGCGATCTTTGCGAGTACAAGTGTCGACAGTTAGGAAGTTTGAAGCGGCATAAGTTGAAACACACCGGCGAGCCACCGTTAATTTGTGACGCTTGCGATTACGAATGCCGATCTGCCCTAGACATGAAGAAACACAAGGTGGAACATAGCGAGGTGTTCGCTTGTACTCTTTGCGAATATAAAGGCCTACAGGCCAACAAATTGAAGCtgcacatgttaatacacaccgggGAGAAGCCGTTCTCGTGTGAagtttgcgattacaaatgccgtcACCGCTCTAAATTGAGACGACACATGTTCAGACACACCGGTGAGCCGTTCTCGTGCGGAGTTTGCGGTCACAAAAGCCGAAAGGTCCAAGAATTGAAACAGCACATGTTAAGGCACGCCGGCGAGAAGCAGTTCAGTTGCAATTTTTGCAACTTTAAGTGTCGATATGCCGCAGTTTTACAACGACACAGATTAAAACAACATGTCGGCGAGTCGCGTTGTCAGCTCTGCGGTTACAAAGCTCAGACACCTGCGCATATGAGACGGCATAAGTTaacgcacaccgacgagaaaccttCCAGTTTATTGTACGAGTTTGAAAGTGTGAGCGAAAGGAAACGCGGATGTCGCATGTGCGgttcaaatttcaaatgtcGCAAACACAGCAGCGGGCATGTACTGCCACATGCTTCCGAGAAGCCATCCGGCTGTGACTTTTGCGGATACAAAACCAAACGACTCGACAATCTGAAACGGCACATAATAACACACATGGGCGAGAAGCTGTTCACTTGTGAACTCTGCGATTACAAGTGTCGCGATTCCACGCTTTTCAAATGGCACGGATTGACGCACAACAAAGGCAGACAACTGTTCAGttgcgacctttgcgattacaaatgccgactgACCGGAAAGTTCAAGCAGCACATGCTggtacacaccggcgagaagccgtacGGTTGtaacctttgcgattacaaaaccCGACAGTCGGGGAATCTGAAGCAACACATGCTGACGCACAccaacgagaagccgttcgctTGCGAATTTTGCGATTACAGAAGCGGGCAGATGGGCAAGTTGAACCGGCACATGAAAACGCACGCCGGCGTAAAACCGTTCGGTTGTgaactttgcgattacaaatgccgactgCCCGGGATGTTTAAGCGGCACATGTTGACGCACGGCAACGAGAAATTATTCAGATGTGCTTCTTGCGACTTCACGTGCCAACGTTCTGGAAGTTTGAGACAACACGTGCTAACACATTCCGTCGAGGAGAAGACGTTCAGGTGTGGTATTTGCGGGTACGAATGCCAATTAGAGGCGCAGCTCACACGACATAAGCTAACACATCCTGCCGAGAagacattcacattcacattcagtTGTGATTTTTGCGGGTACGAATGCCAATCGGAGGCAGAGTTGAAACTGCACGCGTTAACGCATCCTGGCGAGAAGACGTTCACTTGTGATTTTTGCGAGTACGAATGCCAATCAGAGGCGGAGTTGAAACTGCACGTGTTGACGCATCCTGGCGAGAAGACGTTCACTTGTGATTTTTGCGGGTACGAATGCCGATCGCAGGTGGAGTTCAAGCGACACATGTCGACACACCTTTGCGAGAAGCGATACGCTTGTGAATTTTGCGAATATAAAACTCGGCATTCTAGTACGTTCAAACGACACGTGctgatacacaccggcgagaaaccgtttagCTGTGAACTTTGCGACTATAAATGCCGGCAAGCCAGTCAATTGAAAACGCACATGACGACACATCGACAATCAGTTGCTGCACAGTACATACTTGGAGAGTAG
- Protein Sequence
- MVRHNDEKPFRCVLCDYKFKTPELLKRHVLLHGNVRQFSCDLCEYKCRQLGSLKRHKLKHTGEPPLICDACDYECRSALDMKKHKVEHSEVFACTLCEYKGLQANKLKLHMLIHTGEKPFSCEVCDYKCRHRSKLRRHMFRHTGEPFSCGVCGHKSRKVQELKQHMLRHAGEKQFSCNFCNFKCRYAAVLQRHRLKQHVGESRCQLCGYKAQTPAHMRRHKLTHTDEKPSSLLYEFESVSERKRGCRMCGSNFKCRKHSSGHVLPHASEKPSGCDFCGYKTKRLDNLKRHIITHMGEKLFTCELCDYKCRDSTLFKWHGLTHNKGRQLFSCDLCDYKCRLTGKFKQHMLVHTGEKPYGCNLCDYKTRQSGNLKQHMLTHTNEKPFACEFCDYRSGQMGKLNRHMKTHAGVKPFGCELCDYKCRLPGMFKRHMLTHGNEKLFRCASCDFTCQRSGSLRQHVLTHSVEEKTFRCGICGYECQLEAQLTRHKLTHPAEKTFTFTFSCDFCGYECQSEAELKLHALTHPGEKTFTCDFCEYECQSEAELKLHVLTHPGEKTFTCDFCGYECRSQVEFKRHMSTHLCEKRYACEFCEYKTRHSSTFKRHVLIHTGEKPFSCELCDYKCRQASQLKTHMTTHRQSVAAQYILGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -