Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065424.1:15252329-15255456[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.054 6 9.0 0.4 2 22 235 255 234 258 0.90

2 12 0.002 0.22 13.5 2.7 3 23 267 286 265 286 0.96

3 12 8e-05 0.0089 17.9 0.9 1 23 292 314 292 314 0.97

4 12 1.8e-05 0.002 20.0 4.8 1 23 320 342 320 342 0.97

5 12 0.091 10 8.3 0.7 3 20 350 367 349 369 0.92

6 12 0.018 2 10.5 9.0 1 23 376 398 376 398 0.97

7 12 4.3e-05 0.0048 18.8 1.3 1 23 407 429 407 429 0.99

8 12 0.00041 0.046 15.7 2.1 1 23 434 456 434 456 0.96

9 12 2.2e-07 2.5e-05 26.0 0.3 1 23 462 484 462 484 0.98

10 12 5.1e-06 0.00056 21.7 3.5 1 23 490 512 490 512 0.98

11 12 3.9e-07 4.4e-05 25.2 1.9 1 23 518 540 518 540 0.99

12 12 6.1e-06 0.00067 21.4 0.6 1 23 546 568 546 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.054	6	9.0	0.4	2	22	235	255	234	258	0.90
2	12	0.002	0.22	13.5	2.7	3	23	267	286	265	286	0.96
3	12	8e-05	0.0089	17.9	0.9	1	23	292	314	292	314	0.97
4	12	1.8e-05	0.002	20.0	4.8	1	23	320	342	320	342	0.97
5	12	0.091	10	8.3	0.7	3	20	350	367	349	369	0.92
6	12	0.018	2	10.5	9.0	1	23	376	398	376	398	0.97
7	12	4.3e-05	0.0048	18.8	1.3	1	23	407	429	407	429	0.99
8	12	0.00041	0.046	15.7	2.1	1	23	434	456	434	456	0.96
9	12	2.2e-07	2.5e-05	26.0	0.3	1	23	462	484	462	484	0.98
10	12	5.1e-06	0.00056	21.7	3.5	1	23	490	512	490	512	0.98
11	12	3.9e-07	4.4e-05	25.2	1.9	1	23	518	540	518	540	0.99
12	12	6.1e-06	0.00067	21.4	0.6	1	23	546	568	546	568	0.98

Sequence Information

Coding Sequence: ATGACTTCAACCATAAATATTTCGAACATTATTTATAAAGAATCTGAATTCAATATATACACATTTAATGAACAAAACGTTATCATCGATTTAGATAAAGATGATGCATTTATTAACGCAGTTACTTCACAGctATTACAACATTTTGATACAAAGTTATCAAACAAAGATGCTGTTTTATATAAATTACCTGAcgctgaaataaattttgaggGAATGTGTAGGATATGTTTGGCCACTACCaatgttaaatatatttttgacaCTATGTATGAGGGTACCTTGATAAGTAATCTTTTATTGGAATTCACGTCTGTGTCTGTGCAGAGAAATGACATGTTGCCAAAACACATATGTGGAATTTGCATTTCGGAACttataaactgctaccgatTCAAGAAAAAATGTCTTCAATCGCAAGACACTTTCGAAGAAATCATAAAGTATTCCAATACAAGGCGAGATGAAACTGAAGACCAAGAAATTACACAAATAGAAAACTGTAGAGAGCAAGAATTAGGTTGGAATTCCAATGAAAAATTAAACGGATCATttgtgaaagaagaaaatgaagtaaCAATACAAAATAGCGAAGAAGGAAGTTGTGATCCAAACTTACTTCTCAGTGATCTAAACATGTCCGACATTGAAAATGAAGAGGTGAAAGATatgaataaacaaattaatttcaagttGCCTTTAAGTTGTTCTAAATGTGGTGATGATTTTCAAACTTTAGAGGAACTTGAAAAGCACCGTAAAGAAGTAAGGCATCCTagtaaaaaaaggaaacttgCTTGCCATATATGTGGAAAAATGTATGCACGTCATACATTGGAACAGCACCTGCGTACACATACAAAAGAGAAACCATATATATGCAGGATATGTTCTAGGGCATTCagcttaaaaaataatttaaatcgacATTTCATGATACATACTGGAGAAAGGCCTCACATATGTCACATTTGTGGTAAAgGTTTCATACAATCTCGCAGTTTAAGTGAACATATGTGCACTCATACTGGGGAAAAACCGATTTTATGTGATGTTTGTGGTAGAGgtttCAGTCAGGGTAATACTTTCAACGATCACAAGTGCATTCAACCTTCCAGTAGAATATACAAATGCAATTACTGTGGTACGACATTCAGTCACTGTATGGAGCATCGTAAACACATGCAGGACCATCAATTAGATCAACGGTTTAAGGAATTTCAGTGCGTAGTATGTGAAAAATTATTCAATTCAAGAAACACATTAAAAACACACATGTTAACTCACGGTGAAAAAACCTACCTATGCAGTGAGTGTGGTAAAGGATTTCACCTTCACTCAGGGTTACTGTCTCATATGAAAGTGCACACCGGAGAAAAACCATATTCATGTCCAGAATGCAGCAAACGATTTTCGCAAGCTGGAAGTCTAAAGTCGCATATGTTGATACACAGTGGCCAAAGACCTTATAATTgcgaaatttgtttaaaaacgtTTGTACAGAAGAATCATCTAAAATATCATATAAGGACGCATAGCGGAGAGAAACCTTATAAGTGTTCATATTGCAACAAGCGCTTTTCCCTGAATGGAACACTAACTGTTCACATTCGAACTCATACTGGTGAAACCCCCTATGTTTGTGATGTATGTGGACGAGGATTTTATGATTCAAGTAGCATGAAGAAACATAAAAGAGGACATggtgatttaaaaattgttgatgAAACAAGTTCAGTGAAATCTGAATTAATATAA
Protein Sequence: MTSTINISNIIYKESEFNIYTFNEQNVIIDLDKDDAFINAVTSQLLQHFDTKLSNKDAVLYKLPDAEINFEGMCRICLATTNVKYIFDTMYEGTLISNLLLEFTSVSVQRNDMLPKHICGICISELINCYRFKKKCLQSQDTFEEIIKYSNTRRDETEDQEITQIENCREQELGWNSNEKLNGSFVKEENEVTIQNSEEGSCDPNLLLSDLNMSDIENEEVKDMNKQINFKLPLSCSKCGDDFQTLEELEKHRKEVRHPSKKRKLACHICGKMYARHTLEQHLRTHTKEKPYICRICSRAFSLKNNLNRHFMIHTGERPHICHICGKGFIQSRSLSEHMCTHTGEKPILCDVCGRGFSQGNTFNDHKCIQPSSRIYKCNYCGTTFSHCMEHRKHMQDHQLDQRFKEFQCVVCEKLFNSRNTLKTHMLTHGEKTYLCSECGKGFHLHSGLLSHMKVHTGEKPYSCPECSKRFSQAGSLKSHMLIHSGQRPYNCEICLKTFVQKNHLKYHIRTHSGEKPYKCSYCNKRFSLNGTLTVHIRTHTGETPYVCDVCGRGFYDSSSMKKHKRGHGDLKIVDETSSVKSELI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466678;
90% Identity: iTF_00466678;
80% Identity: -