Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:75732559-75737073[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.14 16 7.7 0.4 3 23 45 65 44 65 0.95

2 28 3.6 4e+02 3.3 5.5 1 23 71 93 71 93 0.96

3 28 0.0016 0.18 13.8 1.5 2 23 136 157 135 157 0.97

4 28 0.03 3.3 9.8 1.3 1 23 163 185 163 185 0.95

5 28 0.088 9.8 8.4 1.0 2 23 192 213 191 213 0.94

6 28 0.015 1.7 10.8 0.7 1 23 219 241 219 241 0.98

7 28 0.019 2.1 10.4 7.0 2 23 248 269 247 269 0.97

8 28 0.00014 0.015 17.2 3.6 1 23 275 297 275 297 0.98

9 28 0.014 1.5 10.9 6.0 1 23 303 325 303 325 0.98

10 28 0.0013 0.14 14.1 1.0 1 23 340 362 340 362 0.99

11 28 0.00055 0.061 15.3 1.5 2 23 427 448 426 448 0.97

12 28 0.72 80 5.5 2.5 2 23 455 477 454 477 0.92

13 28 0.00054 0.06 15.3 3.4 1 23 483 505 483 505 0.98

14 28 0.00017 0.019 16.9 2.5 1 23 511 533 511 533 0.98

15 28 0.2 22 7.3 7.0 1 23 540 562 540 562 0.98

16 28 0.035 3.9 9.6 3.8 1 23 589 611 589 611 0.98

17 28 0.33 37 6.5 3.8 1 23 617 639 617 639 0.97

18 28 0.0015 0.17 13.9 1.2 1 23 645 667 645 667 0.97

19 28 0.0027 0.3 13.1 1.4 3 23 675 695 673 695 0.96

20 28 1.5e-05 0.0017 20.2 2.1 1 23 705 727 705 727 0.98

21 28 0.0019 0.21 13.6 2.7 3 23 735 755 733 755 0.98

22 28 0.00071 0.078 15.0 1.2 1 23 784 806 784 806 0.98

23 28 7e-05 0.0078 18.1 3.6 1 23 812 834 812 834 0.99

24 28 0.0071 0.79 11.8 8.9 1 23 840 862 840 862 0.98

25 28 0.67 74 5.6 2.3 3 23 870 890 868 890 0.97

26 28 0.0072 0.8 11.8 5.6 1 23 896 918 896 918 0.98

27 28 0.0088 0.97 11.5 3.0 1 19 924 942 924 944 0.95

28 28 0.33 37 6.5 1.0 5 23 944 962 943 962 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.14	16	7.7	0.4	3	23	45	65	44	65	0.95
2	28	3.6	4e+02	3.3	5.5	1	23	71	93	71	93	0.96
3	28	0.0016	0.18	13.8	1.5	2	23	136	157	135	157	0.97
4	28	0.03	3.3	9.8	1.3	1	23	163	185	163	185	0.95
5	28	0.088	9.8	8.4	1.0	2	23	192	213	191	213	0.94
6	28	0.015	1.7	10.8	0.7	1	23	219	241	219	241	0.98
7	28	0.019	2.1	10.4	7.0	2	23	248	269	247	269	0.97
8	28	0.00014	0.015	17.2	3.6	1	23	275	297	275	297	0.98
9	28	0.014	1.5	10.9	6.0	1	23	303	325	303	325	0.98
10	28	0.0013	0.14	14.1	1.0	1	23	340	362	340	362	0.99
11	28	0.00055	0.061	15.3	1.5	2	23	427	448	426	448	0.97
12	28	0.72	80	5.5	2.5	2	23	455	477	454	477	0.92
13	28	0.00054	0.06	15.3	3.4	1	23	483	505	483	505	0.98
14	28	0.00017	0.019	16.9	2.5	1	23	511	533	511	533	0.98
15	28	0.2	22	7.3	7.0	1	23	540	562	540	562	0.98
16	28	0.035	3.9	9.6	3.8	1	23	589	611	589	611	0.98
17	28	0.33	37	6.5	3.8	1	23	617	639	617	639	0.97
18	28	0.0015	0.17	13.9	1.2	1	23	645	667	645	667	0.97
19	28	0.0027	0.3	13.1	1.4	3	23	675	695	673	695	0.96
20	28	1.5e-05	0.0017	20.2	2.1	1	23	705	727	705	727	0.98
21	28	0.0019	0.21	13.6	2.7	3	23	735	755	733	755	0.98
22	28	0.00071	0.078	15.0	1.2	1	23	784	806	784	806	0.98
23	28	7e-05	0.0078	18.1	3.6	1	23	812	834	812	834	0.99
24	28	0.0071	0.79	11.8	8.9	1	23	840	862	840	862	0.98
25	28	0.67	74	5.6	2.3	3	23	870	890	868	890	0.97
26	28	0.0072	0.8	11.8	5.6	1	23	896	918	896	918	0.98
27	28	0.0088	0.97	11.5	3.0	1	19	924	942	924	944	0.95
28	28	0.33	37	6.5	1.0	5	23	944	962	943	962	0.95

Sequence Information

Coding Sequence: ATGAAGAGGCACGTGTTGAATCACGAACACCGTGCGACTCACACCGTTGAAAAACCGTTCAAATACAGCAAATGTGGATACGTCTGTAAGAGGGCGCTCGTGCTCCTGCATTCAGATCAGAAACCTTCAGCGTGCAACCTTTGTGATGGCAAGTCCAGGTGGAGTAGTAATGTGCAAAGACATATGATGACGCACGTCGGCGAAAAGCGCTTTGATTGCAACTTGTGCGGTTGTAAGTGTAACCAATCGCTTCGCATGAAAGAGCACATATTTACTCACACCGGCGAGGCGGACTTTCGAAGACTCTGTATTAATCTGTGTTATTATTCCAGGATTCAAGAGAACTCCAACGTCCTTGAAACAACAACTCACGTCAACGGAAAACGCAGCGCCGACTCGAGGCTCACGTGCGATCTCTGTCAGCTTAAGTTCGCCAAGCTCTATCGCTTGAAGCGCCACATGTTGaaacacaccggcgaaaagccgTTCGAATGTCACCTCTGCGATTTCAAGTGCGCGCGCGGCGACGCTTTAAAAGTGCACGTTTCAGCCCACGACTGCAATAAACGGTTGAAATGTACCTTGTGCAGCTACGAAACTTTCCGGGAGGAATTACTGAAGAGACACCTGTATTTACACAACGAGGAGAATTCCTTTACTTGTCAATTTTGCGGCCACCTCTTCGGCAGCGGGAAAGCATTACTCGTGCACATAAACACTCACACCGGGGCGAAACCCCTGCAGTGCTGCGTGTGCCATTCTAACTTCAACGACGCTTCGACCTTGAAACACCACATGTTCACGCACACCGGCGTGAAACCTTTCCAGTGCAAGCTGTGCGATTTTAAGTCGTCCAGGAAGAATTCACTGAACCGGCACATGAGTAGACATACCGGCGATAAACCCCACAAGTGCAACTTTTGTGATTACAGGTGCTCCAGGAAGTGGGTGCTGGAAAAGCACGTGCAGAGGCACGCCACCAGACAATCGACGATCAAGAAAGACGGCGAGAATCGCTTCAAGTGTGAATTGTGCGAGTACAGGAGCCCCAGAAAGGCCAACGTGAAAAAGCACGCGAAGACCCACAACAAGAAACGTCTCAGGAGCGGCGCCTTCAAAGCGCAAGAGGTGAAACACCCTGGCGAGAAGCCGATTGATGATTTCGGGAGTACCTCTGATAAACCAACGAACGCCGAAGCCGGAAAGCTCTTCTGTTTCTCCTGCGACTATCAGTGTGAACAAATTGCAGAGTGGACCCCCAAAATTGAAACCGCGAGCGAATGTCACATGTgcgattctaaatttaaaagtcCCGGATACATTCGGAAGCACATGGCGACACACACCAAGGACGAGTTGATCAAATGCGTTGCCTGCAATTACAGGTGCCAAAACCGCGAGAAACTGAAGCGGCACGTGTtgttaaaacacaccgacgagaagccgtttagttgcgACCTTTGCGCTTACAAGTGCCGACGCAACGTCAGTCTAAAGCGACACATGCTGACGCACACCCAAGAGAAGCCCTTCAGCTGCgatctctgcgattacaaatgcggACAGCTCGAATATTTGAAGCGACACATGAGAATACACACTGACGACGAGAAGCCGTTTCGTTGCGTCGTTTGCAATCACGAGTTCCGTTGTCTCGAACACCTGCAGCAACACATGACGACGCACACCGGCGAAGGACCTCTCACCGCTGCCGCCGTTTGCGACTACAAATGTCGacgtaaacaaaattcattGCGACCCGCGTACAGCTGCGAACTTTGCGATTACACATGTCGACGCGGGGATTCTTTCAGGttgcacaagttaaaacataccggcgagaagccgttcagctgcgacctctgcgattacaaatgcctaCAGAAGAGAACGCTGAAGCAGCACAcgttaatacacaccggcgagaaacctttcgcttgcgatctttgcgattataaatgccgacgcgGCGACGCCCTGAGGCAGCACCTGTTGacgcataccggcgagaagccgctGGCATGCGACCTTTGCGACTACAGGTGCCGAAGTCGCGGCCAATTGAGACAGCACGGATTGACGCACAGTTTAACGCCCACCGGCGAGAGACGATTTCCGTGCAGCATTTGCGGTTACAGATTCAAAATTAGGAGATACTTGAAGCGACACATGTAcacgcacaccggcgagaaaccgttcggttGCGATCTatgcgattacaagtgccgacAGGTCGAGAATTTGAAACGTCACAGATTGACCCACATCGGCGAGAGGCCCTTTGCCTGTGACCGTTGCGATTACAGATGTGGGCGGATCTCCAAATCCAAAATCGTGAAGGGAAGGGCATTCGAGTGTCGCATATGTGGTTCTAAATTTAAAGCGAAACAGAATTTGAAATACCACGTCCTGacgcataccggcgagaagccgtttcgATGCGCCATTTGCGACTATAGATGTCGAATATCCACCAATCTAAAACAGCATATGCGGACGCACACCGCGGAAAAGCCTTTTCATTGCAACGTTTGCGACTACAAGTGTCGGCACTCCCCGACATTGAAAAGGCACATGTTcacacacaccggcgagaaaccgttcggttgcgaattttgcgattacaaatgcggACGAGCCGAACGTTTGAAAGAGCACAAGTTGAAACACACCGGCGGGAAGCCTTACGCTTGCGATCTTTGTAAATATAGGTGTCGACGAGCCGACACCCTGAAACATCACAAATTAACGCATTCCAGTGAGAAACTGTTTAAATGTGCCATCTGCGGTTACAAATGCCGACGTAAGTACAGGTTAAAGCAACATAGTAACTGTGATTATAAAACTAAAGTCCATCAGAGTTTAAAGGTACACATGTTGAAACACACGGGCGAAAAGCCCTTCACGTGCAACGTCTGA
Protein Sequence: MKRHVLNHEHRATHTVEKPFKYSKCGYVCKRALVLLHSDQKPSACNLCDGKSRWSSNVQRHMMTHVGEKRFDCNLCGCKCNQSLRMKEHIFTHTGEADFRRLCINLCYYSRIQENSNVLETTTHVNGKRSADSRLTCDLCQLKFAKLYRLKRHMLKHTGEKPFECHLCDFKCARGDALKVHVSAHDCNKRLKCTLCSYETFREELLKRHLYLHNEENSFTCQFCGHLFGSGKALLVHINTHTGAKPLQCCVCHSNFNDASTLKHHMFTHTGVKPFQCKLCDFKSSRKNSLNRHMSRHTGDKPHKCNFCDYRCSRKWVLEKHVQRHATRQSTIKKDGENRFKCELCEYRSPRKANVKKHAKTHNKKRLRSGAFKAQEVKHPGEKPIDDFGSTSDKPTNAEAGKLFCFSCDYQCEQIAEWTPKIETASECHMCDSKFKSPGYIRKHMATHTKDELIKCVACNYRCQNREKLKRHVLLKHTDEKPFSCDLCAYKCRRNVSLKRHMLTHTQEKPFSCDLCDYKCGQLEYLKRHMRIHTDDEKPFRCVVCNHEFRCLEHLQQHMTTHTGEGPLTAAAVCDYKCRRKQNSLRPAYSCELCDYTCRRGDSFRLHKLKHTGEKPFSCDLCDYKCLQKRTLKQHTLIHTGEKPFACDLCDYKCRRGDALRQHLLTHTGEKPLACDLCDYRCRSRGQLRQHGLTHSLTPTGERRFPCSICGYRFKIRRYLKRHMYTHTGEKPFGCDLCDYKCRQVENLKRHRLTHIGERPFACDRCDYRCGRISKSKIVKGRAFECRICGSKFKAKQNLKYHVLTHTGEKPFRCAICDYRCRISTNLKQHMRTHTAEKPFHCNVCDYKCRHSPTLKRHMFTHTGEKPFGCEFCDYKCGRAERLKEHKLKHTGGKPYACDLCKYRCRRADTLKHHKLTHSSEKLFKCAICGYKCRRKYRLKQHSNCDYKTKVHQSLKVHMLKHTGEKPFTCNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -