Dhop025986.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065424.1:14596750-14599000[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00044 0.049 15.6 0.4 2 22 234 254 233 257 0.90
2 12 0.00046 0.051 15.5 2.4 2 23 265 285 264 285 0.97
3 12 4.2e-05 0.0046 18.8 3.0 1 23 291 313 291 313 0.98
4 12 0.0001 0.011 17.6 0.5 1 23 319 341 319 341 0.97
5 12 0.0006 0.066 15.2 1.1 3 21 349 367 348 368 0.94
6 12 0.00077 0.085 14.8 1.3 1 23 375 397 375 397 0.98
7 12 0.0086 0.95 11.5 4.8 2 23 412 433 411 433 0.97
8 12 3.5e-05 0.0039 19.0 5.3 1 23 438 460 438 460 0.96
9 12 2.6e-07 2.9e-05 25.7 0.3 2 23 467 488 467 488 0.97
10 12 0.00017 0.019 16.9 7.0 1 23 494 516 494 516 0.99
11 12 4.7e-06 0.00052 21.8 1.1 1 23 522 544 522 544 0.99
12 12 7.8e-06 0.00086 21.1 3.4 1 23 550 572 550 572 0.99

Sequence Information

Coding Sequence
ATGctGCCGGAACATTTTGACACGAATGTCATAGAAAATAAGGATGATGTTGTTATGCTGTGCAGATTGTCCGAtgctgaaataaattttgacaaaatCTGCAGGACGTGTCTTGCAAGCACCAATGTTAAGTACAATTTTGACGACGTATGCGATGGTGTTCCAATAAGCACTCTTTTAGTGCAGCATGCATCCATTTCTATAAAAGAAGATATGATGCCAAAACGTATATGTGAAGCTTGCCTCTCAGAACTTGTAAGCTGCTACTTATTCAAGAAAAAATGTCTTCAGTCACAATCCACTTTAGAAGCAGTCATAAAATATTCCAGTACAAGACAGGAAGTACATCGGAATGAGAATATGACACAAATTCCATTTCTGTTACAGAATCTTGAATTTACTGCTCTTATCGCTGATGATACACAACAAGAAATTGCTGtaacagaaaattttgaagagcAAGAAATAACAACTTCAGAACCAAATGTTAACGAAATATTAAATGGACCTggtgaaaaagaagaaagtgaAATAATACAAGAtaaagagaaacaaaataaattaacaatacaagataaaaaagaagaaatggatTGTGATAGTGACTTGACTTGTGGTGACCTAAACAAGCTCAAACTTGAAACTGACGatgtaaaaatagaaaatgtaaAAGAGCAAATTGAAAGTAAACAACCTTTGGAGTGCTTCAAATGTGGTCTAATCTTCACAACTTCAATGGAACTTGAGAATCACCGTAGGGAAGTAAAACATCCCAAGAAAAGAAGGAAACAACCTTGCCATGTATGTGGGAAAATAATCACGAGCCGTCACTTGACAGTTCACATGCGCACACATACAAAAGAAAAACCATATGTATGCAAGATATGTTCCAAAGCATTCAGTTTGAATTGTAACTTAAAACGACATTTCATGATACATACCGGAGAAAAGCCTTATATTTGTGATTTTTGTGGTAAAGGTTACATACAGGCTAGTACTTTAAGTGAACACATTTGTTTGCATACTGGCCAGAAACCCCTTTTGTGTGAAATTTGTGGTAAAGgTTTTACATATCATGGTAACTTAACTCTACATAAATGTATTGACCCTAGTGATAGATCATTTAAATGCCGCTACTGTGATAAAATATTTAGCGAAATTTTGGATTATCAAAATCATTTACAAAGCCATCAAATTACTAATCAAGAGATTAATCAACATTTAAAAGAACTTCAATGCAGGGTGTGTAAAAAATTCTTCCATGGAAGAAGGACATTATACAATCACCTTCGAACTCACCGTGAAAAGGCTTACTTATGCTATCATTGCGGTAAAGGATTTACTCATAATTCTAGCTTCCAGACTCACTTGAAAGTACATACAGGAGAAAAACCTAATTCGTGTCCAGAATGTGGCAAATCTTTTTCACAAACGGGAAGCTTAAAATCGCATATGTTGATACACAGTGGCCAAAAACCTTTTAAGTGTAAACTTTGTCCTAAATCTTTTACACAAAGGAGTCATTTAGGTTGTCATATGAAGACGCACAGTGGAGAGAAGCCTTACAAGTGTTCGTTCTGCAACAAAAGTTTTGCCTTAAATGGAACATTAACAGTTCACGTTCGAACTCACACCGGGGAAACTCCTTATGTTTGTGATGTATGTGGACGTGGATTTTATCATTCAAGTACCATGAAGAAACATAGAAGAAGACATATTAATAccaaaattttgaataaaataagttcaacataa
Protein Sequence
MLPEHFDTNVIENKDDVVMLCRLSDAEINFDKICRTCLASTNVKYNFDDVCDGVPISTLLVQHASISIKEDMMPKRICEACLSELVSCYLFKKKCLQSQSTLEAVIKYSSTRQEVHRNENMTQIPFLLQNLEFTALIADDTQQEIAVTENFEEQEITTSEPNVNEILNGPGEKEESEIIQDKEKQNKLTIQDKKEEMDCDSDLTCGDLNKLKLETDDVKIENVKEQIESKQPLECFKCGLIFTTSMELENHRREVKHPKKRRKQPCHVCGKIITSRHLTVHMRTHTKEKPYVCKICSKAFSLNCNLKRHFMIHTGEKPYICDFCGKGYIQASTLSEHICLHTGQKPLLCEICGKGFTYHGNLTLHKCIDPSDRSFKCRYCDKIFSEILDYQNHLQSHQITNQEINQHLKELQCRVCKKFFHGRRTLYNHLRTHREKAYLCYHCGKGFTHNSSFQTHLKVHTGEKPNSCPECGKSFSQTGSLKSHMLIHSGQKPFKCKLCPKSFTQRSHLGCHMKTHSGEKPYKCSFCNKSFALNGTLTVHVRTHTGETPYVCDVCGRGFYHSSTMKKHRRRHINTKILNKISST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466652;
90% Identity
-
80% Identity
-