Dhop036758.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:76840907-76844017[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00074 0.082 14.9 0.1 1 23 126 148 126 148 0.97 2 19 0.0013 0.14 14.1 1.9 1 23 152 174 152 175 0.96 3 19 0.2 22 7.3 0.9 1 23 180 202 180 202 0.94 4 19 0.27 30 6.8 1.2 1 23 208 232 208 232 0.96 5 19 0.0041 0.45 12.6 0.2 1 21 238 258 238 261 0.90 6 19 0.001 0.11 14.4 0.5 2 23 267 288 266 288 0.96 7 19 9.4e-05 0.01 17.7 0.2 2 23 294 315 293 315 0.95 8 19 5.1e-05 0.0057 18.5 2.9 1 23 321 343 321 343 0.98 9 19 5.7e-07 6.4e-05 24.7 1.3 1 23 349 371 349 371 0.97 10 19 0.032 3.5 9.7 0.1 1 23 488 510 488 510 0.97 11 19 0.029 3.2 9.9 1.6 1 23 514 536 514 537 0.96 12 19 0.0036 0.4 12.7 0.6 1 23 542 564 542 564 0.97 13 19 1.1 1.2e+02 4.9 1.5 1 23 570 594 570 594 0.93 14 19 0.00031 0.034 16.1 1.1 1 23 600 623 600 623 0.97 15 19 0.0038 0.42 12.7 1.4 1 23 631 653 631 653 0.97 16 19 5.3e-05 0.0058 18.5 0.2 2 23 659 680 658 680 0.95 17 19 2.7e-05 0.003 19.4 0.8 2 23 687 708 686 708 0.97 18 19 2.7e-08 3e-06 28.8 1.2 1 23 714 736 714 736 0.97 19 19 2.7 3e+02 3.7 2.0 1 21 742 762 742 763 0.93
Sequence Information
- Coding Sequence
- ATGTGCACGTGTTTTCACTCGCTTCTCGCGTGGTCTCGAGTGAAACACCCACTCAAGGACGAAATTCACGAGACACCTGTGTCAGGTAAGGAAGAAGGAGCGGTCTCAGTATTATGCACAGGTCGTTTAGTAACTGTAACTATAGGgtTAGGATCAACCGAGTGTGAAATTCCATCAGGCGACCCGGAAAAAGTGAAACCCAAAAGAACTCGCAAAAAGTGGGAGGAGGACACTGAAGTAAGGACGTACACGTGCGAAATATGTGCGTTCACTGCGGAGTTGACGAGGACCGAACTGAACGCTCACTATAACACCCACGGGAAGGCGCTCGGGTTGAAGAAGTCCAGGAGGGGGCCCCCAAATGCCGACCGAATTTTCGACTGCGAAATCTGCTCGGCGAAATTCTCTTCCGAGGAAGACCTAGACGAGCACATACTAACTCACGACGACCAATACAAATGCGAAGTCTGCAAAATGGCTTTCAGGAAGATCATCGATTACACCTTGCACATGCAGTCGCACCACGACGATAAATTGTACAAGTGCCCCCTTTGCGACTACAAAACGGCCAACGTCTATCGAATTAAAACGCACGTGTTTTCGCACGGCTTCGTCAAGAGCTACGAGTGCCCCATCGAGGGGTGTAAGAAAGGCTTCATGTGGTCCACCCATTTTCAGGAGCATAAGAACTATCACACAGGCGAGAAGCCTTTCGTTTGCGAAACGTGCGGAACTGCGTTTATGTACAGTCGCCAATTGAGTGTGCACAGAGGAGCGAAGCACAGCACCAAACTAATCACGTGCAAGATCTGCTCGGAGGTCTTCGTCGGCCGAAAAAACTTCCGCTCGCACTTATCGCTACACAAGGAACCCGAATGGGTTTGCGCAACTTGCGGGAAGACCTTCAAGAAGCGCGTTGGCTTGAAGGCTCACGAGTTAATGCACACCGGGTATAAGCCGCATAAGTGTAGGTACTGCGACAAAGTTTTCGGCAAGAGGGGCTACTTGATTCAGCACGAGCGCACGCACACCGGTGATAAACCGTATGATTGTGAGCACTGCGGCAAAAAGTTCGCGCAGAGATCCAGTTTGGTCAGGCATGTGCGCGGACATACGGGCGAAAAACCTCACACCTGCCGCTTCTGCAACAACGCATATACTACAAAAACAACGCTCGCTTGCCACTTGAAAAATTGCAAAGGGCCTTctgatttaaaaatGTTAGGATCAATCGAGTGCGAAGTGAAATGGACGATACCATCGAGCCACCCGGATAAGGCGAAACCTAAAAGAATTCGTAAAAAGTGGAAGGAAGACGTTGAAGTGAGGACGTACACGTGCGAGATATGTTCGTTCACCGCGCAGTTAACGAAGACCGAACTGAACGCTCACTATAACACCCACGGGAAGGCGCTCGGGTTGAAGAAGTACAGGAGGGGACCCCCGAATCCCGAGCGGGTTTTCGATTGCGAAATCTGCTTGGCGAAATTCTTTTCTGAGGAAGACCTAGACGAGCACATACTAACTCACGACGACCAATACAAATGTGAGGTGTGCAAAATGGGTTTCAAGAAGATCATAGACTATACCATGCACGCGCAGTCGCACCACGTTGATAAACTGTACAAGTGCCCCCTGTGCGACTACAAGACGGCTAACGCCTACCAAATTAAGACGCACGTGTTTTCGCACAACTTCATTAAGAAATACGAATGCCCCATCGAGGGGTGCAAGAAGGGCTTCATGATTTTCACGCATTTCGAGGAGCATAAGTATTaccacaccggcgagaaacctttTGTCTGCGAGACCTGCGGGTTGGCTTTTATGTACAGTCGCTACCTAAGGTCGCACATGACGAGGAAGCATAGCATCGACGCCAGCAAGAAATTCAAATGTGATATTTGCTTAGAAGTCTACTCGGGCCATCAAAACTACCGTCGGCATTTACTCGAACATAAACAATCCGAGTGGGTTTGTGCGACCTGCGGCAAGACGTTCAGAAAACAAGCGGGCCTAAAGACCCACGAGCTGATGCATGCTGGGTCTAAGCCAAATAAATGTAGGTTTTGCGACAAGGCGTTCACCCGAAAGGGCTACTTGATTGAGCACGAGCGCGTACATACCGGTCACAGGCCGTATGACTGTGACTATTGCGGAAAGAAGTTCACGCAGAGGTCGAGTTTGGTGAGGCACATGCGTGGTCACACGGGTGAGAAGCCCTACATCTGTCGCTTCTGTAACAACGGATATACCTCAAAAGCCACCCTCACTTGTCACTTAAGAAACTGCAAAGGCCCTTCTGAGTGA
- Protein Sequence
- MCTCFHSLLAWSRVKHPLKDEIHETPVSGKEEGAVSVLCTGRLVTVTIGLGSTECEIPSGDPEKVKPKRTRKKWEEDTEVRTYTCEICAFTAELTRTELNAHYNTHGKALGLKKSRRGPPNADRIFDCEICSAKFSSEEDLDEHILTHDDQYKCEVCKMAFRKIIDYTLHMQSHHDDKLYKCPLCDYKTANVYRIKTHVFSHGFVKSYECPIEGCKKGFMWSTHFQEHKNYHTGEKPFVCETCGTAFMYSRQLSVHRGAKHSTKLITCKICSEVFVGRKNFRSHLSLHKEPEWVCATCGKTFKKRVGLKAHELMHTGYKPHKCRYCDKVFGKRGYLIQHERTHTGDKPYDCEHCGKKFAQRSSLVRHVRGHTGEKPHTCRFCNNAYTTKTTLACHLKNCKGPSDLKMLGSIECEVKWTIPSSHPDKAKPKRIRKKWKEDVEVRTYTCEICSFTAQLTKTELNAHYNTHGKALGLKKYRRGPPNPERVFDCEICLAKFFSEEDLDEHILTHDDQYKCEVCKMGFKKIIDYTMHAQSHHVDKLYKCPLCDYKTANAYQIKTHVFSHNFIKKYECPIEGCKKGFMIFTHFEEHKYYHTGEKPFVCETCGLAFMYSRYLRSHMTRKHSIDASKKFKCDICLEVYSGHQNYRRHLLEHKQSEWVCATCGKTFRKQAGLKTHELMHAGSKPNKCRFCDKAFTRKGYLIEHERVHTGHRPYDCDYCGKKFTQRSSLVRHMRGHTGEKPYICRFCNNGYTSKATLTCHLRNCKGPSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -