Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065419.1:42815106-42816868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2e-06 0.00022 23.0 3.1 1 23 244 266 244 266 0.99

2 11 0.00046 0.051 15.5 7.6 1 23 272 294 272 294 0.99

3 11 0.00041 0.046 15.7 0.4 1 23 300 322 300 322 0.97

4 11 2.7e-06 0.0003 22.6 6.2 1 23 328 350 328 350 0.99

5 11 0.0008 0.089 14.8 0.4 1 23 356 378 356 378 0.98

6 11 4.5e-07 5e-05 25.0 1.6 1 23 384 406 384 406 0.98

7 11 5.6e-07 6.2e-05 24.7 1.3 1 23 412 434 412 434 0.98

8 11 1.7e-05 0.0019 20.1 1.9 1 23 440 462 440 462 0.98

9 11 1.4e-07 1.6e-05 26.6 2.0 1 23 468 490 468 490 0.98

10 11 1.6e-06 0.00018 23.2 5.7 1 23 496 518 496 518 0.98

11 11 7.8e-05 0.0086 18.0 5.6 1 23 524 546 524 547 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2e-06	0.00022	23.0	3.1	1	23	244	266	244	266	0.99
2	11	0.00046	0.051	15.5	7.6	1	23	272	294	272	294	0.99
3	11	0.00041	0.046	15.7	0.4	1	23	300	322	300	322	0.97
4	11	2.7e-06	0.0003	22.6	6.2	1	23	328	350	328	350	0.99
5	11	0.0008	0.089	14.8	0.4	1	23	356	378	356	378	0.98
6	11	4.5e-07	5e-05	25.0	1.6	1	23	384	406	384	406	0.98
7	11	5.6e-07	6.2e-05	24.7	1.3	1	23	412	434	412	434	0.98
8	11	1.7e-05	0.0019	20.1	1.9	1	23	440	462	440	462	0.98
9	11	1.4e-07	1.6e-05	26.6	2.0	1	23	468	490	468	490	0.98
10	11	1.6e-06	0.00018	23.2	5.7	1	23	496	518	496	518	0.98
11	11	7.8e-05	0.0086	18.0	5.6	1	23	524	546	524	547	0.96

Sequence Information

Coding Sequence: aTGTATCACTTATCTGATTGTTGCCGTGTTTGTCTCCGTACAGACTGCAGCCTCACCCACAGTTCAACTCTAGATAGGGATAATATAAGAGTAATAGACAAACTTGCTGCTTGCATATCGGAAATTATGTGGCAGAAAGGTGATTATCCAGTGTACGTATGTTCTTTATGCATTGAGAAGCTACGAACCGCATACGATTTTAGAAATATGTGCCTTCGATCTGATACTATGCTGCAACAGTATGTTACAACAGACCATTGCCAACTTAAGCAAAATTTTGCTCACAGACCCTTGAGTACGCCTACGAAATTTGATTTCGGCATTCAGACTGGACCTTTTCCCATTACAGAGCATAAcgattacattaattttaagcaGTTGCTAGAAGAAAATGACGTAAATAAAACACATTATGAAGAACCTAAAGAAGACAACGCCCTaacaaatttagaaacaaaCATCGAAAGCATTGCCACTAATATAGAAAACATGAGCAGTTCCACAGATGTTGCCGAAATTAGTGATAACATTACGGATTCAAATGTCACAAATGTAACCAATGAACAAGCAAATATTACtgataaaagtaataataaaagtgATGACGATAATGTTAAAACTGAGAAACACGTGAAAATTTCTGTTGTTAATACAGAAACCCAAACACCATTAGCTTTGTTAACCCAATCAAATGATCCATTTGTTCAACCGAAACTTCCTCCAAAGAGATACACATGTAACATCTGCAATAAAGATTACAGTAATTATTCTAATCTGCGTTCTCATAAGAAAACACATTCAGGGGAAAAACCATACGAGTGCAAGTACTGTGAAAAACGGTTTTTACACCCCCATCATTTAAGAGAACACATTCGAAGGCATACAGGAGAAAAGCCTTTTGCCTGTGTACTATGCAATAAACGATTTACAATACGTGGGGAAGTCACCATGCACATGAGGTCTCACACTGGTGAGAAACCTTATTCATGTACTTACTGCGATAAAAAGTGTTCCACCCATTCTGATCTCAAAGTGCACATTCGGACACATACAGGAGAAAAGCCTTTTGAATGCTTGGTGTGTGGCAAGAAATTTGCGAGTGCTTACATTCTTAATTCGCATAATAAAACACACACGGGTGAGAAGCCGTTTTCATGCTCAGTTTGTGATAAGAAGTTTGCGCAATCATCTCAATTGACTGTCCACTTTCGTACTCACACGGGCGAAAAGCCATACGCATGCACGCACTGTGATCAGCGATTTCCCAGGAATACAGACTTGACAATACACATGCGAGTTCACACAGGTAAAGTTCCTTATTCCTGCAGTGTGTGTAACAGGGGCTTCGTTTATCAGTCTCATTACCAAGCACACATGGTGAAGCATTCCGGGGAAAAGCCATACTCTTGTAACATTTGTGATAAAAAATTTACGACTGCATCGTACTTACAAGAGCACACCAGGAAACACACGGGGCAGAAGTTATTTAACTGTACACACTGTGATAAGACGTTTACTAGATCTGCGTTTCTGACGAAACACTTGCGGAAGCATACTGGTGAAAAGCCTTACCCGTGCAATATATGCAATAAACAGTTTTCGTCCTCAAATTACTTGCATACGCATGTGAAGAAACATCATAATGTTCTTGATTTGCAAATTGCAAATAATCCGTCAGTAATCAATTCTGTactgcaataa
Protein Sequence: MYHLSDCCRVCLRTDCSLTHSSTLDRDNIRVIDKLAACISEIMWQKGDYPVYVCSLCIEKLRTAYDFRNMCLRSDTMLQQYVTTDHCQLKQNFAHRPLSTPTKFDFGIQTGPFPITEHNDYINFKQLLEENDVNKTHYEEPKEDNALTNLETNIESIATNIENMSSSTDVAEISDNITDSNVTNVTNEQANITDKSNNKSDDDNVKTEKHVKISVVNTETQTPLALLTQSNDPFVQPKLPPKRYTCNICNKDYSNYSNLRSHKKTHSGEKPYECKYCEKRFLHPHHLREHIRRHTGEKPFACVLCNKRFTIRGEVTMHMRSHTGEKPYSCTYCDKKCSTHSDLKVHIRTHTGEKPFECLVCGKKFASAYILNSHNKTHTGEKPFSCSVCDKKFAQSSQLTVHFRTHTGEKPYACTHCDQRFPRNTDLTIHMRVHTGKVPYSCSVCNRGFVYQSHYQAHMVKHSGEKPYSCNICDKKFTTASYLQEHTRKHTGQKLFNCTHCDKTFTRSAFLTKHLRKHTGEKPYPCNICNKQFSSSNYLHTHVKKHHNVLDLQIANNPSVINSVLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258349;
90% Identity: iTF_01258349;
80% Identity: -