Dhop036748.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- Zfp42
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:76770355-76776248[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0065 0.72 11.9 2.5 2 23 124 145 124 145 0.97 2 23 1.4e-05 0.0015 20.3 5.2 1 23 161 183 161 183 0.98 3 23 0.016 1.8 10.7 0.8 3 23 191 211 189 211 0.97 4 23 0.028 3.1 9.9 1.0 2 23 218 239 217 239 0.97 5 23 0.0065 0.72 11.9 2.5 2 23 272 293 272 293 0.97 6 23 1.4e-05 0.0015 20.3 5.2 1 23 309 331 309 331 0.98 7 23 0.044 4.8 9.3 1.0 3 23 339 359 337 359 0.96 8 23 0.02 2.3 10.4 1.2 2 23 366 387 365 387 0.97 9 23 0.0016 0.18 13.8 2.3 2 23 394 415 393 415 0.96 10 23 0.001 0.11 14.5 3.3 1 23 421 443 421 443 0.98 11 23 0.01 1.1 11.3 6.7 2 23 450 471 449 471 0.96 12 23 0.014 1.5 10.9 1.6 1 22 477 498 477 498 0.95 13 23 0.054 6 9.0 2.3 2 23 533 555 532 555 0.94 14 23 0.048 5.3 9.2 0.1 1 23 570 592 570 592 0.98 15 23 3e-05 0.0033 19.3 3.3 1 23 596 618 596 618 0.98 16 23 0.32 35 6.6 0.1 2 23 626 648 625 648 0.96 17 23 0.24 26 7.0 1.6 1 23 654 676 654 676 0.92 18 23 0.41 46 6.2 0.4 1 23 682 705 682 705 0.93 19 23 0.00059 0.066 15.2 1.1 2 23 716 738 715 738 0.96 20 23 1.6e-05 0.0018 20.1 3.6 3 23 746 766 744 766 0.96 21 23 1.4e-05 0.0015 20.3 2.3 1 23 772 794 772 794 0.99 22 23 5.2e-07 5.8e-05 24.8 1.2 1 23 800 822 800 822 0.99 23 23 0.0053 0.58 12.2 0.0 1 21 828 848 828 849 0.95
Sequence Information
- Coding Sequence
- ATGTGCGTACtcataccggcgagaaaccgtatTCCTGCGATTCAGTCAGCTCTCAACGCTCAAAAATCACGTGCCATCGCATACGGGGGAAGACCCTTCGTTTGTGACGACTCAGTTCCTCCAAATTGTTTGGTCGTTGATGAATACGTCTTAAATATCGACCTACGGTATATCGCATATGTTCTATGGGATTCAAATCCGGAGAATGAGCTGGCCAACCTCTGCTTGATGCAGAAAGTTTCTAGGAATTTGTGCGTTATGGCGTCGGACGTTATCTTGCTGGGAAACTACTCCAGTCTGTTCGTTTATCAAAGGTATCAATGGACCCCTATAACTAaaacaatgaataaaaaaacactCGATCGCCGAACGTGCGATCTTTGCGGTTATAAGTGCGGACGACGTGAAAGTTTGAAGGCGCACAAGTTGAAGCACGCCGAGGAGAAACCGTCCAGCTTAAGCCATGCAAGCGAGAAGCTGTTCAGTTGTGCTCTTTGTGGTTACAAGTTCCGACGTTACCACAATTTAAAACGGCACATGTTCACGCACAGTGACGAGAGACCCATAGCTTGTAGCCTTTGTGATTACAGATGCGGATTGCCTGAACGTTTAAAAAAGCACATGCTGACGCACAGCGACGAGAAACCTCTAAGTTGCAGTCTCTGCGGTTACAGGTGCCAACTGCCCGGACGTTTAAGGGagcacatgttaacgcacaGCGACGAGAAACCTTTAAGTTGTGGATTTTGCGAGTACAGGTATCAATGGACCCCTATAACTAaaacaatgaataaaaaaacactCGATCGCCGAACGTGCGATCTTTGCGGTTATAAGTGCGGACGACGTGAAAGTTTGAAGGCGCACAAGTTGAAGCACGCCGAGGAGAAACCGTCCAGCTTAAGTGACGCAAGCGAGAAGCTGTTCAGTTGTGCTCTCTGCGGTTACAAGTTCCGACGTTACCACAATTTAAAACGGCACATGTTCACGCACAGTGACGAGAGACCCATAGCTTGTAGGCTTTGTGATTACAGATGCGGATTGCCTGAACGTTTAAAAAAGCACATGCTGACGCACAGCGACGAGAAACCTCTAAGATGCAGTCTCTGCGGTTACAGGTGCCAACTGCCCGGACGTTTAAGGGAGCACATGTTGACGCACAGCGACGAGAAACCTTTAAGTTGTGGATTTTGCGAGTACAGGTGCCAACGGtccggaaatttaaaaaagcacatGTTGATACACGCCGCTAAGAAGCCGTTCACTTGCGATCTTTGCGAGTATAAGTGCCGATCGTCGGGagatttgaaacggcacaagttaatgcacaccggcgagaagcctttAAGTTGTAGTCTCTGCGATTACAGTTGCCGACAACACGTACTCTTGAAGCACCACATGTTGAAACATTCCGATGAGATGaagttcagttgtgatctttgcgactacAAATGCCAAGATGCTGAAACTTTGGAAAGGCACAAaagGAAAGCTTTTAAGCAAGAAATTGACGAAGACGGTTTGAATCTTTTAGAAAGACTAAGACGACGCTGGAAAAGGCAAAATCCCCTAAAGAAACTCGGAAGGAACTGGCACTGCCGAGACTGCAACCAAAAATTCGAAAGCAAGAAACTCGTGCTGCAGCATCGCAGGGACGTCCACCGGGACGAGAACGACGAGAACTACACGTACCTAGATGACGTTTATCGCTGCAAGTTATGTGGCGTCGCGGCGTCCTCGAAGCTCCAGATCGAAAACCACCTGCTCATCCATGCCGACTCTCACGTTTGCACCATTTGCGCGAAAAGCTTTCGTACGAGCTCTAAATACCTGAGCCACTTAAGGACCCATAACACCTCGAACGATCCGACTTCCTGTCCGTTATGCGACGTGAAATCGATAAACATAACGGCGTATTTGCGACACCTGAACATGGCGCACTTGAGAAACTTCCCCCACTATTGCATGCAATGCGATAAGGGTTTCTTTGACCCGCTTCTCTTTAAGGAACACGAAGACTATCACAGGTCCGGTAAAAGGTACGCCTGCGTCGTGTGCGGTGCGACGTTTCTGTATTCGCGAGGCCTCTTCATCCATCAGATTCACACGCATAACGTTTGGACTTCCGAAGAAATTAAGAACCAGTGCACGATATGCAAGAAACTGTTCGTCAAGGACGGGAGCTTGCAGAATCACATGCGGCTGAGACACGGGGGCTTGAGGCGCCACCTCTGCGATAACTGCGGCAAAAGTTTCAAGGACAAGACGAAGCTAAAGTTGCATTATAGGATACACACGGGAGAGAAGCCCTTTCAATGTGGTCACTGCGAGAAGAGTTTCTCCAAAAAGCCTTACTTGGTATTGCACGTGCGTACTCATACCGGTGAGAAGCCCTACACCTGCGAGTACTGCAGCAAGTCGTTTAGCCAGCCCACAACGCTCAGGATTCACGTGCGATCGCACACAGGAGAGAAGCCCTTTGTCTGTCAGATATGTTCAGCTGCCTTCCCTGTTAAGGCATCGCTAACGGCGCACTATAAGTCTTGCGCGAGAAAATAA
- Protein Sequence
- MCVLIPARNRIPAIQSALNAQKSRAIAYGGRPFVCDDSVPPNCLVVDEYVLNIDLRYIAYVLWDSNPENELANLCLMQKVSRNLCVMASDVILLGNYSSLFVYQRYQWTPITKTMNKKTLDRRTCDLCGYKCGRRESLKAHKLKHAEEKPSSLSHASEKLFSCALCGYKFRRYHNLKRHMFTHSDERPIACSLCDYRCGLPERLKKHMLTHSDEKPLSCSLCGYRCQLPGRLREHMLTHSDEKPLSCGFCEYRYQWTPITKTMNKKTLDRRTCDLCGYKCGRRESLKAHKLKHAEEKPSSLSDASEKLFSCALCGYKFRRYHNLKRHMFTHSDERPIACRLCDYRCGLPERLKKHMLTHSDEKPLRCSLCGYRCQLPGRLREHMLTHSDEKPLSCGFCEYRCQRSGNLKKHMLIHAAKKPFTCDLCEYKCRSSGDLKRHKLMHTGEKPLSCSLCDYSCRQHVLLKHHMLKHSDEMKFSCDLCDYKCQDAETLERHKRKAFKQEIDEDGLNLLERLRRRWKRQNPLKKLGRNWHCRDCNQKFESKKLVLQHRRDVHRDENDENYTYLDDVYRCKLCGVAASSKLQIENHLLIHADSHVCTICAKSFRTSSKYLSHLRTHNTSNDPTSCPLCDVKSINITAYLRHLNMAHLRNFPHYCMQCDKGFFDPLLFKEHEDYHRSGKRYACVVCGATFLYSRGLFIHQIHTHNVWTSEEIKNQCTICKKLFVKDGSLQNHMRLRHGGLRRHLCDNCGKSFKDKTKLKLHYRIHTGEKPFQCGHCEKSFSKKPYLVLHVRTHTGEKPYTCEYCSKSFSQPTTLRIHVRSHTGEKPFVCQICSAAFPVKASLTAHYKSCARK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -