Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72557790-72566731[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3e-05 0.0033 19.3 1.9 1 23 13 35 13 35 0.98

2 20 0.00016 0.017 17.0 2.3 3 23 43 63 41 63 0.92

3 20 0.027 3 10.0 1.9 2 23 70 91 69 91 0.96

4 20 0.00036 0.039 15.9 1.2 1 23 97 119 97 119 0.98

5 20 0.00012 0.014 17.3 0.2 1 23 139 161 139 161 0.97

6 20 0.017 1.8 10.6 2.7 3 23 169 190 167 190 0.97

7 20 3.1 3.5e+02 3.5 0.3 3 23 199 219 197 219 0.95

8 20 3e-06 0.00033 22.4 2.2 1 23 225 247 225 247 0.98

9 20 0.0016 0.18 13.8 7.5 1 23 253 275 253 275 0.97

10 20 2.3e-05 0.0025 19.6 1.7 1 20 281 300 281 300 0.98

11 20 0.00017 0.019 16.9 1.1 1 23 314 336 314 336 0.98

12 20 0.094 10 8.3 2.2 1 23 342 364 342 364 0.97

13 20 0.0012 0.14 14.2 2.1 3 23 372 392 370 392 0.97

14 20 0.00015 0.017 17.0 1.5 1 23 398 420 398 420 0.98

15 20 4.5e-06 0.0005 21.8 2.0 1 23 426 448 426 448 0.98

16 20 0.00045 0.05 15.6 1.5 2 23 455 476 454 476 0.96

17 20 0.016 1.7 10.7 2.4 1 23 482 501 482 501 0.96

18 20 0.0014 0.16 14.0 9.8 1 23 507 529 507 529 0.97

19 20 0.00064 0.07 15.1 2.0 1 23 535 557 535 557 0.98

20 20 0.00057 0.063 15.2 3.5 1 23 563 585 563 585 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3e-05	0.0033	19.3	1.9	1	23	13	35	13	35	0.98
2	20	0.00016	0.017	17.0	2.3	3	23	43	63	41	63	0.92
3	20	0.027	3	10.0	1.9	2	23	70	91	69	91	0.96
4	20	0.00036	0.039	15.9	1.2	1	23	97	119	97	119	0.98
5	20	0.00012	0.014	17.3	0.2	1	23	139	161	139	161	0.97
6	20	0.017	1.8	10.6	2.7	3	23	169	190	167	190	0.97
7	20	3.1	3.5e+02	3.5	0.3	3	23	199	219	197	219	0.95
8	20	3e-06	0.00033	22.4	2.2	1	23	225	247	225	247	0.98
9	20	0.0016	0.18	13.8	7.5	1	23	253	275	253	275	0.97
10	20	2.3e-05	0.0025	19.6	1.7	1	20	281	300	281	300	0.98
11	20	0.00017	0.019	16.9	1.1	1	23	314	336	314	336	0.98
12	20	0.094	10	8.3	2.2	1	23	342	364	342	364	0.97
13	20	0.0012	0.14	14.2	2.1	3	23	372	392	370	392	0.97
14	20	0.00015	0.017	17.0	1.5	1	23	398	420	398	420	0.98
15	20	4.5e-06	0.0005	21.8	2.0	1	23	426	448	426	448	0.98
16	20	0.00045	0.05	15.6	1.5	2	23	455	476	454	476	0.96
17	20	0.016	1.7	10.7	2.4	1	23	482	501	482	501	0.96
18	20	0.0014	0.16	14.0	9.8	1	23	507	529	507	529	0.97
19	20	0.00064	0.07	15.1	2.0	1	23	535	557	535	557	0.98
20	20	0.00057	0.063	15.2	3.5	1	23	563	585	563	585	0.98

Sequence Information

Coding Sequence: ATGAACGAAACAGATAAACGCAGCGGCGAAAAGctgttcagttgtgatctttgcgattacacaACCCGAAACAGTGGACATTTGAAAGTGCACGTGCGATCGCATACCGATGAAAGGCCGTTCGGCTGTAATCTTTGCGATAAAAAATTCCGACATAAAGGAAGCTTGATGCGTCACTTGCCaacacacaccggcgagaagccattAAGCTGTGATacttgcgattataaatgccaacGGGCCGACTTGCTGAAGCTTCACAATTTAACGCACACGGGCGAGAAGCAATTCAGTTGCGatatttgcaataaaaactTCCTACAGAAACCGTATCTGAAACTTCACCTGCAAACGCACGCCGGCGAGAAGCGGTACCAATGGAATTGCGAATCCAAAATTCTAAGCGGAAGCACATTTAAATGTGCCATTTGTGATTCCGAGTATAAACGCCCTGGATATTTGCGGAGGCATTTACTGGCACAtcccgacgagaagccgttcggttgtgacctttgcgatcaCAAGTTTCAAAAAAGGGCAGacttgaaacagcacaagttaacgACGCACAGTAGACAGAGGACgacgttcggttgtgatctttgcgattataaaagccAATTGCTCGGAAATGTGAGAAAGCAcaagttaatacacaccggcgagaggcCGTTCACCTGCGAACTTTGCGATCGCAAATTCCGACGACGCGGAGATTTGAAGAAGCACACGTTATCGCATACCGGTGAGAAACCGTTTTGTTGTGATATTTGTGGTTACAGATGTCGGCACGCCGGACATTTGAATGCTCACAAGTTAACACACACCGATGTGAAGCCATTCAAGTGTGGCCTTTGTGATTACAAATTTCGACAAAAGAGCACCTTGAAGAAGCACATATGGCGACTTTCAAAATCTAAAACTCTCAAGAAAGAAACCTTCAAGTGCGAAACGTGCGATTCCAATTTTAGAACTCCCGGAAGTTTCGGGAAGCACATGCTGaaacataccggcgagaaaccgttcagttgcgacctttgcgattataaatgccgggcAAGCCAACGGTTGAAGGAGCACGCGTTAACGCATACGGACGAGAAGCCTTTCGgatgtgacctttgcgattacaaatgtcgacaGAAGGCAGCGTTAAAGAAGCACGTGCtgaagcacaccggtgagaagccgttcacgTGCGAACTTTGCGGTCATAGAAGCCCACACGCCGGAAGCTTAAAAGCTCATATGACGACACACTCGGACGAGAGGCCGTTCAGCTGCAACGTCTGCGATTACAAGTTCCGACGAAGAAATGCCTTGAAGATGCACATGCTAagacataccggcgagaagccgttaaGTTGCActgtttgcgattataaatgccgaggaCCCGGCAATTTGAAACTGCACATGACCAAGCATACCGGCGAGGAGCGGTTTAATTGTGAGCTCTGCGATCGCAAATTTCGTGACTTGAAAAAGCATATGTTGacgcacaccggtgagaaaccgTTTTGTTGTCACATCTGTGGCTATAAATGTCGACACGCCGGACACTTGAATTCTCACATGTTGATACACGGCGACGTGAAGCCGTACAGATGCAGCCTTTGTGATAGCAAATTTCGATACAGCAACGTCCTGAAGAAGCATATGTTACTACATACCGGCGAGATGCCGTACAGCTGCGATTTCTGTGATTTCAAGTGCCGAAGATTGGAGAGTTTGAAACGACACCTGCTCGTACATTCATAG
Protein Sequence: MNETDKRSGEKLFSCDLCDYTTRNSGHLKVHVRSHTDERPFGCNLCDKKFRHKGSLMRHLPTHTGEKPLSCDTCDYKCQRADLLKLHNLTHTGEKQFSCDICNKNFLQKPYLKLHLQTHAGEKRYQWNCESKILSGSTFKCAICDSEYKRPGYLRRHLLAHPDEKPFGCDLCDHKFQKRADLKQHKLTTHSRQRTTFGCDLCDYKSQLLGNVRKHKLIHTGERPFTCELCDRKFRRRGDLKKHTLSHTGEKPFCCDICGYRCRHAGHLNAHKLTHTDVKPFKCGLCDYKFRQKSTLKKHIWRLSKSKTLKKETFKCETCDSNFRTPGSFGKHMLKHTGEKPFSCDLCDYKCRASQRLKEHALTHTDEKPFGCDLCDYKCRQKAALKKHVLKHTGEKPFTCELCGHRSPHAGSLKAHMTTHSDERPFSCNVCDYKFRRRNALKMHMLRHTGEKPLSCTVCDYKCRGPGNLKLHMTKHTGEERFNCELCDRKFRDLKKHMLTHTGEKPFCCHICGYKCRHAGHLNSHMLIHGDVKPYRCSLCDSKFRYSNVLKKHMLLHTGEMPYSCDFCDFKCRRLESLKRHLLVHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -