Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72105360-72110838[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.014 1.5 10.9 1.8 1 23 40 62 40 62 0.97

2 28 0.0054 0.6 12.2 1.9 2 23 69 90 68 90 0.97

3 28 0.0063 0.7 12.0 2.1 3 23 98 118 96 118 0.97

4 28 0.0078 0.87 11.7 3.0 2 23 125 146 124 146 0.96

5 28 0.054 6 9.0 1.9 1 23 152 174 152 174 0.97

6 28 0.068 7.5 8.7 3.0 1 23 181 203 181 203 0.96

7 28 0.35 39 6.5 8.9 1 23 209 231 209 231 0.97

8 28 0.013 1.4 11.0 0.2 1 23 237 259 237 259 0.96

9 28 0.014 1.6 10.8 3.5 1 23 266 288 266 288 0.97

10 28 0.0011 0.12 14.3 0.9 3 23 296 316 294 316 0.98

11 28 0.00024 0.027 16.4 4.9 2 23 323 344 322 344 0.97

12 28 0.024 2.7 10.1 2.2 1 23 375 397 375 397 0.98

13 28 0.00054 0.059 15.3 0.8 1 23 403 425 403 425 0.98

14 28 0.058 6.4 8.9 1.7 3 23 433 453 431 453 0.97

15 28 0.00017 0.018 16.9 1.3 2 23 460 481 459 481 0.96

16 28 0.027 3 10.0 0.7 3 21 489 507 489 508 0.96

17 28 0.0005 0.056 15.4 5.2 1 23 521 543 521 543 0.98

18 28 0.00098 0.11 14.5 1.0 1 23 549 571 549 571 0.98

19 28 0.0071 0.79 11.8 2.2 3 23 579 599 577 599 0.98

20 28 4.9e-06 0.00054 21.7 2.4 1 23 605 627 605 627 0.98

21 28 0.0038 0.42 12.7 3.4 1 21 633 653 633 654 0.96

22 28 1.9 2.1e+02 4.1 0.7 13 23 656 666 655 666 0.88

23 28 0.04 4.4 9.4 1.9 1 23 672 694 672 694 0.96

24 28 3.4e-05 0.0038 19.1 1.5 1 23 700 722 700 722 0.98

25 28 0.0037 0.41 12.7 0.7 1 23 728 750 728 750 0.96

26 28 4.1 4.5e+02 3.1 0.3 1 23 757 779 757 779 0.87

27 28 5.5e-05 0.0061 18.4 1.7 2 23 786 807 785 807 0.97

28 28 2.4e-07 2.6e-05 25.9 4.3 1 23 813 835 813 835 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.014	1.5	10.9	1.8	1	23	40	62	40	62	0.97
2	28	0.0054	0.6	12.2	1.9	2	23	69	90	68	90	0.97
3	28	0.0063	0.7	12.0	2.1	3	23	98	118	96	118	0.97
4	28	0.0078	0.87	11.7	3.0	2	23	125	146	124	146	0.96
5	28	0.054	6	9.0	1.9	1	23	152	174	152	174	0.97
6	28	0.068	7.5	8.7	3.0	1	23	181	203	181	203	0.96
7	28	0.35	39	6.5	8.9	1	23	209	231	209	231	0.97
8	28	0.013	1.4	11.0	0.2	1	23	237	259	237	259	0.96
9	28	0.014	1.6	10.8	3.5	1	23	266	288	266	288	0.97
10	28	0.0011	0.12	14.3	0.9	3	23	296	316	294	316	0.98
11	28	0.00024	0.027	16.4	4.9	2	23	323	344	322	344	0.97
12	28	0.024	2.7	10.1	2.2	1	23	375	397	375	397	0.98
13	28	0.00054	0.059	15.3	0.8	1	23	403	425	403	425	0.98
14	28	0.058	6.4	8.9	1.7	3	23	433	453	431	453	0.97
15	28	0.00017	0.018	16.9	1.3	2	23	460	481	459	481	0.96
16	28	0.027	3	10.0	0.7	3	21	489	507	489	508	0.96
17	28	0.0005	0.056	15.4	5.2	1	23	521	543	521	543	0.98
18	28	0.00098	0.11	14.5	1.0	1	23	549	571	549	571	0.98
19	28	0.0071	0.79	11.8	2.2	3	23	579	599	577	599	0.98
20	28	4.9e-06	0.00054	21.7	2.4	1	23	605	627	605	627	0.98
21	28	0.0038	0.42	12.7	3.4	1	21	633	653	633	654	0.96
22	28	1.9	2.1e+02	4.1	0.7	13	23	656	666	655	666	0.88
23	28	0.04	4.4	9.4	1.9	1	23	672	694	672	694	0.96
24	28	3.4e-05	0.0038	19.1	1.5	1	23	700	722	700	722	0.98
25	28	0.0037	0.41	12.7	0.7	1	23	728	750	728	750	0.96
26	28	4.1	4.5e+02	3.1	0.3	1	23	757	779	757	779	0.87
27	28	5.5e-05	0.0061	18.4	1.7	2	23	786	807	785	807	0.97
28	28	2.4e-07	2.6e-05	25.9	4.3	1	23	813	835	813	835	0.98

Sequence Information

Coding Sequence: ATGCACGTGCTGACACATGCCGACGAGAAACCATTCGGATGTGCTATTCGCGATCACCAAACCCGAGGAGCCGAGGCATTAAAGCAGCATATGTTACTACACAGCGGCGGcgagccgttcagttgcgatcgTTGTGATTTCAAGACGCAAACGCAAGACTCCTTGAAAACCCACTTGTCGCTGCACACCAATGAAAAGCCGCTCAAATGTGGCCTTTGCGATTACGAATGCCGGACGACAACAAACTGGACGAAGCACATATTAAGCCACGGCGAAGCGAAGCCGTTCGGCTGTGAcctctgcgattacaaatgccgtgaatcaagatatttgaaacagcacatgttaatacacaccggcgatAAGCCGATCAGCTGCGCTCTTTGCGATTTCAAGTGTAGACAACGCGGAAGTATGAGGcggcacatgttaaaacacaccggccAGAAGCCGTACAGCTGCagtctttgcgattttaaatgtcGGTCCGCCGGAGATATAAAGCAGCACGAGTTGAAACATACTGACCGCGGGAAGCCCTTCAGTTGCAACCTTTGCGAATTTAAGTGTCGGAAAGCCGGATACTTGAAACAGCATGTGGTGAGACACAACAGCGAGAAGCCGTTCTGCTGTGGACATTGCGATTATAAAAGTCATCACCTCGCAAAGCTGAAGAGGCACATGCTGATCcataccgacgagaagccgttcagttgcgatctttgcccTTACAAATCTCGTAGTTCGGAAGGTTTGAAATCACACGGCTTAATACACACCGCCGACAGCGTCGAGTTCAGCTGTGATCAGTGCGATTTTAAGACGCGACATCGCACATCGTTGAAAAACCACGCGTCGgtgcacaccggcgagaaacgaTTTGGTTGTGACGTTTGCGGCCACAAGTCTCGAACGCGCGCAGATTTGAAGGTTCACCTGTTaacgcacaccgacgagaagccgatTAGTTGTaacctttgcgattacagatgCAAGTATAAATCCAAACTGAAAAGGCACATGTTGAaacacaccggtgagaagccgtttagttgtgagcTTTGCGATTGTAAATTCGCTCTACGCGAGAGGCCCCAAGAGATTCTCGACGACAAAAAAACATACGAATGTCGCCTGTGCGATTCTAAATTCCAATCGCAAGGGTGTTTGCGCGAGCACGTGCTGagacacaccgacgagaagctaTTCCGTTGCGCCGTCTGCGACTATAAATTTCAGGACATCGAAAAATTGAAGCGACACGTGTCGACGCACGTCGGGGAGAAGAAATTCGGCTGCGAACTCTGCAACTTCAAATGCCAACAATCCGAATTATTAAGACGGCATGTGCTGATACACACGGGCGAAAAGCCGTTGAGTTGTAATCTGTGCGATTACAGGTCGCGACATCCGGGAACCCTGAAACGGCACATGCTAAttcacaccgacgagaagccgatCGGTTGTGAcctctgcgattacaaatgccgacaaaTTGCATCGTTAAAACGGCACATatGCGACTGGGTTTTCGAAAGTAAATTTACGGACAAGCTAACATACGAATGTCACCTCTGCGGTTCAAAATTCCAATCGCAGGGATGTCTGCGCAAACACATGCTGagacacaccggcgagaagctaTTCCGATGTGTCGTCTGCGATTATAAATTTCAAGACATCGAAAAGCTGAAGCGGCACGTGACGACGCACGTCGGAGAGAAGAAATTCGGCTGCGAGCTTTGCGACTACAAATGCCGACAGTCATTATTACTGAAGCGGCACGTCTtaacgcacaccggcgagaaaccgttcaattGTGACCTGTGCGATTACAGATGCCGACAGCCCGGAAACCTCAAGCGGCACATGCTGActcacaccgacgagaaaccgttcgtcTGCGACCTCTGCGATTACAGATGCCGACAGACTGAACTATTGAAGCggcacatGTGCCTGCAGGCCGTAAATTTGAAGCGTCACATGTTGAGacacaccggcgaaaagccttttagttgtgatctttgcgattataaatgtcgccAGTTCATATCTTTAAAACTACACGTGCTAGCACACACCGACAAGAAGCAGTTCacttgcgatctttgcgattacgaGTGCCGAACGGCCGAGTTACTGAAGCGGCATATCTTAActcacaccgacgagaaactgttcagttgtggtctttgcgattttaaaagTCGACAACTTACCGCGTTGAGGCGGCACATGACGGCGCACGCGGAGGCCGAGAAAACATTCAGTTGTAATTTGTGCGATTACAAGAGCCAATGGCCCGTTGATATAAAACGTCACGTGTTGagacacaccggcgagaagccggtcagttgtgatctttgcagtTACAAGTGCGTGCAACCGTCACAACTGAAGCGGCACATGTtaacacacaccgacgagaagccattCTGCTGTGACATTTGCGATTACAGATTCCGAAGTTCCAGCAACTTGAAACGTCACATGTTAACACACCGTTaa
Protein Sequence: MHVLTHADEKPFGCAIRDHQTRGAEALKQHMLLHSGGEPFSCDRCDFKTQTQDSLKTHLSLHTNEKPLKCGLCDYECRTTTNWTKHILSHGEAKPFGCDLCDYKCRESRYLKQHMLIHTGDKPISCALCDFKCRQRGSMRRHMLKHTGQKPYSCSLCDFKCRSAGDIKQHELKHTDRGKPFSCNLCEFKCRKAGYLKQHVVRHNSEKPFCCGHCDYKSHHLAKLKRHMLIHTDEKPFSCDLCPYKSRSSEGLKSHGLIHTADSVEFSCDQCDFKTRHRTSLKNHASVHTGEKRFGCDVCGHKSRTRADLKVHLLTHTDEKPISCNLCDYRCKYKSKLKRHMLKHTGEKPFSCELCDCKFALRERPQEILDDKKTYECRLCDSKFQSQGCLREHVLRHTDEKLFRCAVCDYKFQDIEKLKRHVSTHVGEKKFGCELCNFKCQQSELLRRHVLIHTGEKPLSCNLCDYRSRHPGTLKRHMLIHTDEKPIGCDLCDYKCRQIASLKRHICDWVFESKFTDKLTYECHLCGSKFQSQGCLRKHMLRHTGEKLFRCVVCDYKFQDIEKLKRHVTTHVGEKKFGCELCDYKCRQSLLLKRHVLTHTGEKPFNCDLCDYRCRQPGNLKRHMLTHTDEKPFVCDLCDYRCRQTELLKRHMCLQAVNLKRHMLRHTGEKPFSCDLCDYKCRQFISLKLHVLAHTDKKQFTCDLCDYECRTAELLKRHILTHTDEKLFSCGLCDFKSRQLTALRRHMTAHAEAEKTFSCNLCDYKSQWPVDIKRHVLRHTGEKPVSCDLCSYKCVQPSQLKRHMLTHTDEKPFCCDICDYRFRSSSNLKRHMLTHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -