Dhop006196.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065419.1:42803493-42805410[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.3e-07 3.7e-05 25.4 3.0 1 23 270 292 270 292 0.98
2 12 4.2e-06 0.00046 22.0 7.2 1 23 298 320 298 320 0.98
3 12 6.2e-06 0.00068 21.4 0.8 1 23 326 348 326 348 0.99
4 12 0.054 6 9.0 3.2 1 23 354 376 354 376 0.95
5 12 0.00043 0.048 15.6 0.9 1 23 382 404 382 404 0.98
6 12 1.6e-08 1.8e-06 29.6 3.7 1 23 410 432 410 432 0.99
7 12 3.1e-05 0.0034 19.2 1.5 2 23 438 459 437 459 0.97
8 12 6.2e-06 0.00069 21.4 2.8 1 23 465 487 465 487 0.99
9 12 2.2e-06 0.00024 22.8 1.3 1 23 492 514 492 514 0.99
10 12 2.9e-06 0.00032 22.5 4.1 2 23 521 542 520 542 0.98
11 12 7.1e-08 7.8e-06 27.5 1.8 1 23 548 570 548 570 0.99
12 12 2e-06 0.00022 23.0 1.6 1 23 576 598 576 598 0.98

Sequence Information

Coding Sequence
ATGTCAAATCAAATAGTTTTTCAGGACAGAAACAGCCCAAATGGCCTGTCCATGGAAAACATGTTCCATGTGGCTGACTGCTGCAGAGCTTGCTTACGAATCGAATGTTCCCTGACGCCAACCAGCGCACAAGACACGGATTCTATCAAATTCTGTGACAAGTTGCTTGCCTGTGTATCAGAAGTTATTTGGTTAAAAGAAGGATTGCCTTCGTTGATCTGTTCGACGTGTATAGAGAGGGTTCGAATTGCTTATGACTTTAGAAATGTCTGCTTGCAATCGGATCAGACCCTCCATAGATATATAAGCCATTTGCAGGAGGAGGCGAAACAGAACATGAACGGCAGACCACTGACGACCCCGACGAAGTTCGATTTCGGAATTCCACAACCCACCCAAGATAGTCTACCTTGCATAATTGAAGAGCCTCAAAATGCAGAGTATCTACACTTGAAGCATTTTTTAGATAATGATGAGGATCTGACAAAATCCGAACAGTTGGTGGATACGGCTACGTCGAGGAGTACGACGCCAGATCAGAACAATGCTGctaattatttaaatcagaATCATCAACTGCAGCAAATGCAGCCAATGCAAACTCAACAACAGATTCAAACCCATCAACTCCAACAACAGGTGCAGCAAGTCCAGACATTCCACCAGCCTCAGCTTCAACAAcaccaacaacaacaacagcaaccAATTCAAGTTCAACCAAGGCAGGTTATTAAAAGAACGACAGGGATTCAAGTCCGCCCCCCAACTCCAACGTCAGTGGATCCGGATGGCCCAGAATCAAAACCATTTAGTTGCACTGTTTGTGGTAAACACTATAGAAAAAATGCTAATTTAAGGATACACATGAGGACCCACACTGGGGAAAAACCCTTTGAGTGTAAATATTGCGAGAAACGCTTTTATCATTCATCACATCTACGAGAACACATTCGCAGACACACGGGCGAAAAACCTTTTCAATGTGCCGTTTGCAACAAGCGATTTACAATCAAAGGTGAGTTAACAATGCATATGAAGTCACACACAGGAGAAAAACCATATGCGTGCACTTGCTGTGATCGACGGTGTTTAACTGCGGCGGATTTGAAGGTACATATGCGAACGCATACGGGGGAAAAACCTTTCAGTTGTGTGACCTGCGGAAAGAAATTTGCGAGCACGTACATCTTAAACTCGCATATAAAAACACACACGGGCGAACGTCCCTATTCCTGCACGGTTTGTGATAAAACCTTCACTCAATCGTCTCACCTCAACGTTCATATGCGTAAACACACCGGGGAAAAAGTTAGCTGTAAAATCTGTTTAGCGAAATTTACTCATTCGTCTCAGCTAACGGTTCATATGCGAGAGCACACAGGGAAGCAACCTTATAAATGTACGATGTGTGATAAAATTTGCAATTACGCTTCAGAGTTGCAAACGCACATGATGAAACACACGGGGGAGAAATTTACTTGCGTCACATGTGATAAAAAATTCACAACGGCTGCGTATTTGCAAGAACACACGCGGACTCACACCGGGGAAAACCTGTCGACGTGTACTATTTGCGATAGACAGTTTACTAGGCATCAGTATTTGGAGAAACACATGCGGACTCACACCGGGGAAAAGCCCTACACTTGCTTCACATGTGGCAAGAAATTCACCCAGTCTTCATCCCTTAAGGTTCATATTCGCATCCATACAGGAGAGAAACCATATTCGTGTACGATATGTGATCGTAGATTTACTACATCTTCCGACTTGTCTGCTCATaataagaaacacaaaaaatatattaatttgtaa
Protein Sequence
MSNQIVFQDRNSPNGLSMENMFHVADCCRACLRIECSLTPTSAQDTDSIKFCDKLLACVSEVIWLKEGLPSLICSTCIERVRIAYDFRNVCLQSDQTLHRYISHLQEEAKQNMNGRPLTTPTKFDFGIPQPTQDSLPCIIEEPQNAEYLHLKHFLDNDEDLTKSEQLVDTATSRSTTPDQNNAANYLNQNHQLQQMQPMQTQQQIQTHQLQQQVQQVQTFHQPQLQQHQQQQQQPIQVQPRQVIKRTTGIQVRPPTPTSVDPDGPESKPFSCTVCGKHYRKNANLRIHMRTHTGEKPFECKYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTAADLKVHMRTHTGEKPFSCVTCGKKFASTYILNSHIKTHTGERPYSCTVCDKTFTQSSHLNVHMRKHTGEKVSCKICLAKFTHSSQLTVHMREHTGKQPYKCTMCDKICNYASELQTHMMKHTGEKFTCVTCDKKFTTAAYLQEHTRTHTGENLSTCTICDRQFTRHQYLEKHMRTHTGEKPYTCFTCGKKFTQSSSLKVHIRIHTGEKPYSCTICDRRFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466620;
90% Identity
iTF_01258314;
80% Identity
-