Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72329161-72335669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.021 2.3 10.3 4.8 1 23 64 86 64 86 0.97

2 25 1.1 1.2e+02 4.9 0.6 1 23 92 112 92 112 0.84

3 25 0.00059 0.066 15.2 1.8 1 23 118 140 118 140 0.98

4 25 0.0027 0.29 13.1 4.5 1 23 146 168 146 168 0.98

5 25 0.0012 0.14 14.2 5.4 1 23 174 196 174 196 0.98

6 25 0.00021 0.024 16.6 1.2 2 23 203 224 202 224 0.97

7 25 0.00041 0.045 15.7 3.2 1 23 230 252 230 252 0.98

8 25 0.00023 0.026 16.5 1.1 1 23 258 280 258 280 0.99

9 25 0.012 1.3 11.1 3.4 1 23 322 344 322 344 0.98

10 25 0.0088 0.97 11.5 2.7 1 23 350 372 350 372 0.96

11 25 0.003 0.33 13.0 2.3 1 23 378 400 378 400 0.97

12 25 0.00076 0.084 14.9 0.3 2 23 407 428 406 428 0.93

13 25 0.00031 0.035 16.1 4.9 1 23 434 457 434 457 0.91

14 25 0.0051 0.56 12.2 1.3 2 23 464 485 463 485 0.97

15 25 4.9e-05 0.0054 18.6 0.5 1 23 491 513 491 513 0.99

16 25 0.31 34 6.6 4.5 3 23 563 583 561 583 0.96

17 25 0.0018 0.2 13.7 2.5 1 23 589 611 589 611 0.97

18 25 0.057 6.3 8.9 6.3 1 23 617 639 617 639 0.98

19 25 7.9e-05 0.0088 17.9 4.0 1 23 645 667 645 667 0.98

20 25 0.00097 0.11 14.5 3.2 3 23 675 695 673 695 0.98

21 25 0.0006 0.067 15.2 1.5 1 23 701 723 701 723 0.98

22 25 0.00072 0.08 14.9 2.0 1 23 729 751 729 751 0.99

23 25 0.00022 0.024 16.5 1.2 1 23 757 779 757 779 0.99

24 25 0.00019 0.021 16.7 1.8 1 23 785 807 785 807 0.99

25 25 0.052 5.7 9.1 3.0 2 23 813 834 812 834 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.021	2.3	10.3	4.8	1	23	64	86	64	86	0.97
2	25	1.1	1.2e+02	4.9	0.6	1	23	92	112	92	112	0.84
3	25	0.00059	0.066	15.2	1.8	1	23	118	140	118	140	0.98
4	25	0.0027	0.29	13.1	4.5	1	23	146	168	146	168	0.98
5	25	0.0012	0.14	14.2	5.4	1	23	174	196	174	196	0.98
6	25	0.00021	0.024	16.6	1.2	2	23	203	224	202	224	0.97
7	25	0.00041	0.045	15.7	3.2	1	23	230	252	230	252	0.98
8	25	0.00023	0.026	16.5	1.1	1	23	258	280	258	280	0.99
9	25	0.012	1.3	11.1	3.4	1	23	322	344	322	344	0.98
10	25	0.0088	0.97	11.5	2.7	1	23	350	372	350	372	0.96
11	25	0.003	0.33	13.0	2.3	1	23	378	400	378	400	0.97
12	25	0.00076	0.084	14.9	0.3	2	23	407	428	406	428	0.93
13	25	0.00031	0.035	16.1	4.9	1	23	434	457	434	457	0.91
14	25	0.0051	0.56	12.2	1.3	2	23	464	485	463	485	0.97
15	25	4.9e-05	0.0054	18.6	0.5	1	23	491	513	491	513	0.99
16	25	0.31	34	6.6	4.5	3	23	563	583	561	583	0.96
17	25	0.0018	0.2	13.7	2.5	1	23	589	611	589	611	0.97
18	25	0.057	6.3	8.9	6.3	1	23	617	639	617	639	0.98
19	25	7.9e-05	0.0088	17.9	4.0	1	23	645	667	645	667	0.98
20	25	0.00097	0.11	14.5	3.2	3	23	675	695	673	695	0.98
21	25	0.0006	0.067	15.2	1.5	1	23	701	723	701	723	0.98
22	25	0.00072	0.08	14.9	2.0	1	23	729	751	729	751	0.99
23	25	0.00022	0.024	16.5	1.2	1	23	757	779	757	779	0.99
24	25	0.00019	0.021	16.7	1.8	1	23	785	807	785	807	0.99
25	25	0.052	5.7	9.1	3.0	2	23	813	834	812	834	0.96

Sequence Information

Coding Sequence: ATGGAGATGACAGCGAGGGATGTCTTCGGTTTCAGGGAAAGCagcgatctggtcggtccttttggatgcaTCGCGTCGGTCCTCGGCCTGGTATGCTCTACAATTCCGGACATAAGGAGACCTGAACGTGGCATATGTGGTTCTGATCAGTATATACCCGAATTACTGTTATCTAATGGCACCAGACTATTCATTTGTAatttttgcgattttaaatgccaaCGAAAGGACAGCATGAAACGACACGTTAAGATCCATTCCGACGACAAACCTTTCGTCTGTGAGATCTGCAACTACAGATCCCGAGTCCCATTGAAACagcacatgttaaaacatacTGGCGAAAAGCAGTTCGTTTGCGATCGTTGCGGTTTCAGTTGCTTCACGATCGGAGCTCTGAATAACCACATGCGAAAACACACAGGCGAGAAACTGTTTAGTTGTGACCTGTGCACTAAAAAGTTTCAACAACTGGGACATATGAGAAGGCACAAGTTAACGCATACCGGCGAAAAGCGGTTCACGTGTGAATTTTGCGATTACAGATGTCAACGTTCAGAAGATCTGAAACGTCACATGTTCAAACATAAAGGGGAAAAATCGATCAAATGCGccctttgcgattttaaatgcgcAAGACCTGACTATCTGAAAAATCACATGTTAACTCATACCGGTGAGAAACCCTTCAAATGCCATCTTTGCAGTTACGAATGCAGTCGGTCCGGAAATTTATGGGCACATGTTTTAAAGCATAGCGATGGGAAGCCGTTTAAGTGCGGACGTTGTGAATATGTAACCAAATCAGCAAGATATTTAAAATTGCACATGCGAGTGCATTCGGATGAGAAGCCGTTTAGATGCTCTGGAATTTCTAAACCTGCGATTTCGGATATATGGAAACCTGAACGTGCTACAGCTCAGCCCGAATATAACGTACTGTTTTTTAATGGCATGAGACAATTCATTTGCAaactttgcgattataaatgccaacGAATCGACAGCATAAAACGACACATTAAGACCCATTCCGACGAGAAGCCTTTCGCCTGTGAGATTTGCAATCATAAGTGCAAATTCGCCGCAAATATGAAACAGCACATGGtaatacacaccggcgaaaagAAGTTCGTTTGCGACCGTTGCGGTTTCAAATGCCTCACGGCCGGAACTTTGAAGCAGCACATGCGAACGCACACCCACGAGAAACTCTTAAGTTGTAGCCTGTGCGCAAAAAGATTCAAGAACCCTAGAAATTTGAACGAGCACGAACTAGCCCACACcagcgagaagccgttcaaGTGCAAAATTTGCGATTATAGATGTCGACGTTCAGATTATCTAAAGCGTCACGTCGCGTTCAAACATAAGAGTGAAAAACCGATCAAATGCggcctttgcgattataaatgcgcaACGGTTGATAATATGAAACGGCACACGGCGACGCATACCGGCGAGAAACAATTCAAATGCAACATCTGCAGTTACAAAAGCAGTCAGGccggaaatttaaaattacacgtGCGAGTGCATTCGGACGAGAAACCGTTTAAGTGTGACCTTTGCGAATATGCGTCCAGatggGCAACTGAACATGGCCAAAGTGGTTCTGATCTTGAATCTTCCAAGTATGTACCCGAATGCATACTATTGAACACCGACGACGCGAAGCCGTTGttttgcgatctttgcgattataaatgccagcTGATCAAACACTTGAGGCAGCACATGAAGGTCCATTCCGACGAGAAGCCCTTCGCCTGTGAGACTTGCAGTTATAAATGCCGATTCGCCGGAAGCTTGAGACAGCACATGTTAACACACACCGACGAAAAGCACTTCGTTTGCGATCGTTGCGCTCACAAGTGTCGCACGCACGGAGCCTTGAAGCGCCACATGGAGAAACACGTCGGCGAGAAACTGTTCAGTTGTGATCTGTGtcataaaagatttaatttaTCCGGGAATTTGAGGCGGCACAAGTTAACGCACACCGGCGGCAAGCCGTTCGGCTGCGAATTTTGCGACTTAAAGTTTCACCGTCTATCGGACCTGCGGCGCCACAGGTTAACGCATAACAGCGAGAAACCGTTCGAATGCgccctttgcgattataagtgcgtACTCTCCGCGTActtgaaacggcacatgttgacgcacaccggcgaaaaacaattcaaatgtaATCTCTGCAGCTACGAATGCAACAAGCCTGCAAACTTGAGGTTGCACTTACTGACGCACACCGACGAGAGACCGTTCAAGTGCGAACGCTGCGAATACGTGAGCAAGTCGGCCAGATATTTAAAGCTGCACATGCGAGTGCATTCTAATGAGAAGCCGTTCAAGTGTAACCTTTGCGAGTTCGCGTCTAAATTTCAAGGTAATTTACAGAAACACATGACGACGCACGAGAAACCGCCGCTCAAGTGTAACACTTGCGAGTATACGTGTAAGTTGGCCaaggatttaaaaaatcacgagTCATCACATTTTTCCTGA
Protein Sequence: MEMTARDVFGFRESSDLVGPFGCIASVLGLVCSTIPDIRRPERGICGSDQYIPELLLSNGTRLFICNFCDFKCQRKDSMKRHVKIHSDDKPFVCEICNYRSRVPLKQHMLKHTGEKQFVCDRCGFSCFTIGALNNHMRKHTGEKLFSCDLCTKKFQQLGHMRRHKLTHTGEKRFTCEFCDYRCQRSEDLKRHMFKHKGEKSIKCALCDFKCARPDYLKNHMLTHTGEKPFKCHLCSYECSRSGNLWAHVLKHSDGKPFKCGRCEYVTKSARYLKLHMRVHSDEKPFRCSGISKPAISDIWKPERATAQPEYNVLFFNGMRQFICKLCDYKCQRIDSIKRHIKTHSDEKPFACEICNHKCKFAANMKQHMVIHTGEKKFVCDRCGFKCLTAGTLKQHMRTHTHEKLLSCSLCAKRFKNPRNLNEHELAHTSEKPFKCKICDYRCRRSDYLKRHVAFKHKSEKPIKCGLCDYKCATVDNMKRHTATHTGEKQFKCNICSYKSSQAGNLKLHVRVHSDEKPFKCDLCEYASRWATEHGQSGSDLESSKYVPECILLNTDDAKPLFCDLCDYKCQLIKHLRQHMKVHSDEKPFACETCSYKCRFAGSLRQHMLTHTDEKHFVCDRCAHKCRTHGALKRHMEKHVGEKLFSCDLCHKRFNLSGNLRRHKLTHTGGKPFGCEFCDLKFHRLSDLRRHRLTHNSEKPFECALCDYKCVLSAYLKRHMLTHTGEKQFKCNLCSYECNKPANLRLHLLTHTDERPFKCERCEYVSKSARYLKLHMRVHSNEKPFKCNLCEFASKFQGNLQKHMTTHEKPPLKCNTCEYTCKLAKDLKNHESSHFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -