Dhop036824.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:77749173-77760315[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.091 10 8.3 6.5 1 23 135 157 135 157 0.98
2 27 9.2e-05 0.01 17.7 1.7 1 23 193 215 193 215 0.98
3 27 6.8 7.6e+02 2.4 0.7 1 23 273 295 273 295 0.90
4 27 0.069 7.6 8.7 0.5 1 23 301 323 301 323 0.97
5 27 0.0037 0.41 12.7 2.1 2 23 330 351 329 351 0.97
6 27 3.2e-05 0.0035 19.2 1.2 1 23 357 379 357 379 0.99
7 27 0.00048 0.053 15.5 2.4 1 23 385 407 385 407 0.99
8 27 0.085 9.4 8.4 0.1 1 15 413 427 413 429 0.89
9 27 0.00012 0.013 17.4 1.1 1 23 478 500 478 500 0.99
10 27 0.00065 0.071 15.1 2.5 1 23 506 528 506 528 0.99
11 27 0.0022 0.24 13.4 3.4 1 23 534 556 534 556 0.94
12 27 0.00021 0.023 16.6 2.5 1 23 562 584 562 584 0.98
13 27 0.0029 0.32 13.0 0.3 1 23 590 612 590 612 0.98
14 27 0.00078 0.087 14.8 0.5 1 23 618 640 618 640 0.97
15 27 0.012 1.3 11.1 2.6 2 23 647 668 646 668 0.96
16 27 2.4 2.7e+02 3.8 1.7 1 13 674 686 674 688 0.84
17 27 3.3e-05 0.0037 19.1 0.6 1 23 713 735 713 735 0.98
18 27 0.0015 0.16 14.0 4.6 1 23 741 763 741 763 0.99
19 27 0.0001 0.012 17.6 1.5 1 23 769 791 769 791 0.98
20 27 3.1e-05 0.0034 19.2 0.5 1 23 797 819 797 819 0.98
21 27 0.00029 0.032 16.2 3.0 1 23 825 847 825 847 0.99
22 27 0.00046 0.051 15.5 3.8 2 23 854 875 853 875 0.96
23 27 0.012 1.4 11.0 5.3 1 23 881 903 881 903 0.98
24 27 0.0046 0.51 12.4 1.4 1 23 909 931 909 931 0.97
25 27 0.00051 0.057 15.4 0.5 1 23 937 959 937 959 0.98
26 27 0.0014 0.15 14.1 2.0 2 23 966 987 965 987 0.97
27 27 0.67 74 5.6 5.3 2 23 994 1015 993 1015 0.96

Sequence Information

Coding Sequence
ATGTACATAGACAGCGAGGTGGTTAAAGGTAGACTTAAGAAAATAGTAAGACTGATAGCAATGACTCTGAAGAAGACGCAAAATAAAATACTCTGGAACGAATCGGATGAACGTATGGTAGAAAATGGACTAAGGCAAGGAGACCCTTTCTCAACCTTACTGTTCAACTTGATACTTGAAACGACCATCAATCAGTGCTTGGCATATGCAGATGACTCGACCCTTATAGCAAAAAACGAAGATCGAACTAAAATTACGTACCACGAGTCCGgaaaaagaagcaaaagaagTCAAccaagaaaaaaGAGTTGCGAGGCCGACAGCAACAGTACTCCTTCTTTACGAACGGAAAGCTGGACTGAATCCGAGTCGTACCGGATCAGATGTGAAGGCGAGAAACCCTTCAGATGTCACTTATGCGAttacaaaagtaatttttctaCGCACTTAGATAAGCACCTGCTCAGGCACGTGCGTGACGATGAGAAGCTGCTGAAATGTACTCTGTGCAGTTATAAAAGTGGCTGCGTCGGAGACTTCAAAACCCACATGATGAGCCACGGCCAAGAAACCCCATTCAGATGCACTATTTGCGATTACGTCGCCAAATCCCCCTGCTGGTTAAGAAAACACATGATGAGACACTACGATGAAAACTTGAGGATGCACAGCGATGAAGAAAAGCCTTTCCAATGCGAAATTTGTGATTATAGATGTAAGATTACCGACGCGGACCACAACGGTGCTTCTTCTTTACAAACAGAAAGCAATTTCTCTACACACCCGGACAAGCATCCGGTTGACGATAAGAAGCCGTTTGAATGTGTACAATGCGGTTACAAGAGTGACTGTGTCAGAGGCCTTAAAGCCCACGTGATGAGTCACAGCGAAAGAAAGCCATTCAAATGCACCCTTTGCgattataccaccaagtatccGGCGATTTTAAAAGGTCACGTGATGAGACACGACGCCGAAAAACCGATCAAGTGCGACCGCTGCGATTACAGATGTAGAGAACGTAGCTACTTGAGGGCGCACGCTTTGACTCACAGCGGCGATAAGCCCTTTAAATGTATGGTTTGCGGTTTCAAGACTGCCCGCGCTAAAAGCTTGAACACTCACATGAGAACGCACACCGATGAGAAGCCTTACAAATGCGATGTGTGTGATTACAGCTGTAAGTACGCGGCGAGCTTCAAGGGGCACATGTTGAAACATACCAGGGGAAAGGCATTTGCATGCGACGTTTGCGACGAGACATTCTCGACGGCCTGGAACTACGACGTGGGCAAATTTTCAGACGGACTTAAAACGCGAGAGCGTAAACGCGGGGGCGAAAAATCACTCAAATGTTACTTCTGCGATTACGAAGCTAACTGCTCCACGCGATTAAGGCATCACATGTTtacgcacaccggcgagaagccgtacaAGTGCGACCTCTGCGATTATAGATGTGCCCAGTCGGCAAGCCTGAAGGTGCACGTGTTGACTCACAGCGCCGATAAACTATTTCAATGTGCGGTATGCGGTTATCAGTGTGGCCAATCTCGCTACCTGAAAAGCCACATGATGAAACACACCAGCGAAAAGCCGTTTAAGTGCAACCACTGCGACTACACGAGCAAATACTCCACGGCTTTAAAAAGGCACAGCGTGGTACACAGCGGTGAAAAGCCGTTTCAGTGTAGCATCTGCGATTACAGATGCAAGCTGTCTGCGAACTTGAAAACGCACGTGCTGACGCACagcgacgagaagccgttcaagTGCGAGCTCTGCGATTTTAGGTCCAAGCAAGCCGCGGGCCTGAAGATGCACGCGATGACGCACAGCGACGAGAATCCGTTCAAGTGCATGATCTGCGGTTACGAATGCAACCGCGTCGGAAGCTTGAGGATCCACATGGTGATACACAGCGACGATAAGCCGTTGAAGTGCGAGGTTTGCGGCTTTAGGTGTAAATTTACGGGAAACTTGAAGACGCACGCCTTGAAGCACAGCGGCGAGAAGACGTTCAAGTGTAAGACTTGCGGTGAGAGGTACTACGAGCCGCACCACGGCTGCGCACCTTCAGGTGACTTCTCGTTTAAGCTCGAATCGAACGCGTCGACGCACGAAGGCGAGAAATCCTTCAAGTGCCCGGAATGCGATTACAAGAGCAATTACTCCGGAAATTTAAAACTGCACATGTCGGTCCACAGTCGCGAGAAGCCGTACAAGTGCGAcctctgcgattacaaatgcaagCGCTCGCTGTATTTAAAAAGTCACCTGTTGACGCACAGCGGCGATAAGCCGTTCAAATGCACGACTTGCGATTACAGGTGCGGAAACGCCGGAAACTTAAAGCGACACCTGGCGGTACACagcgacgagaagccgtttaaaTGTAACCTCTGCGATTACGCGTCCAACCGTTCTGCCAACTTGAAGGTGCACATGTTGAACCACGCCGGCTATAAGCCGTTTAAATGCGCGACTTGCGGCTACGAGTGCAGCCGCGCTGGGGTTTTAAATCACCACATGAAGACGCACAGCGACGAAAAGCTGCTCAAGTGTAACGTCTGTGATTATAGGTGTAACCAATCGCACAGTTTAAAAGCGCACATGGTGATGCATAGCGGCGATAAGCCGTTCAAGTGCGAGCACTGCGGCTGTGAATTCAGCTGGTCGCAGAGTTTTAAGAGGCACGTGCTGACGCACAGCGCCGATAAGTTGTTCGAGTGCGACCAGTGCGACTTTAAGTGCAATTATTCCGGGGGATTGAAAAGGCACGCGTTGATACACACCGGCAAGAAGCCGTTCAGATGTAACATTTGCGATTACGGAAGCAGAGAGTCTAGACTACTGAGGACGCATATGTTGATTCACGTCGACGAAAAGCCGCTTAAATGTAATAGTTGCGATTATAGATGTAGGCGACCTGCACAGCTTAGAATACATGCGCAAAGACATACCGACGGGAAGCCACTCGAATGTAGTCATTGCGAGTACAAATGTTTGCAGACTAGGTCTTTAAAGAAACATATACTAACGCATCAGAAATCGCTATAA
Protein Sequence
MYIDSEVVKGRLKKIVRLIAMTLKKTQNKILWNESDERMVENGLRQGDPFSTLLFNLILETTINQCLAYADDSTLIAKNEDRTKITYHESGKRSKRSQPRKKSCEADSNSTPSLRTESWTESESYRIRCEGEKPFRCHLCDYKSNFSTHLDKHLLRHVRDDEKLLKCTLCSYKSGCVGDFKTHMMSHGQETPFRCTICDYVAKSPCWLRKHMMRHYDENLRMHSDEEKPFQCEICDYRCKITDADHNGASSLQTESNFSTHPDKHPVDDKKPFECVQCGYKSDCVRGLKAHVMSHSERKPFKCTLCDYTTKYPAILKGHVMRHDAEKPIKCDRCDYRCRERSYLRAHALTHSGDKPFKCMVCGFKTARAKSLNTHMRTHTDEKPYKCDVCDYSCKYAASFKGHMLKHTRGKAFACDVCDETFSTAWNYDVGKFSDGLKTRERKRGGEKSLKCYFCDYEANCSTRLRHHMFTHTGEKPYKCDLCDYRCAQSASLKVHVLTHSADKLFQCAVCGYQCGQSRYLKSHMMKHTSEKPFKCNHCDYTSKYSTALKRHSVVHSGEKPFQCSICDYRCKLSANLKTHVLTHSDEKPFKCELCDFRSKQAAGLKMHAMTHSDENPFKCMICGYECNRVGSLRIHMVIHSDDKPLKCEVCGFRCKFTGNLKTHALKHSGEKTFKCKTCGERYYEPHHGCAPSGDFSFKLESNASTHEGEKSFKCPECDYKSNYSGNLKLHMSVHSREKPYKCDLCDYKCKRSLYLKSHLLTHSGDKPFKCTTCDYRCGNAGNLKRHLAVHSDEKPFKCNLCDYASNRSANLKVHMLNHAGYKPFKCATCGYECSRAGVLNHHMKTHSDEKLLKCNVCDYRCNQSHSLKAHMVMHSGDKPFKCEHCGCEFSWSQSFKRHVLTHSADKLFECDQCDFKCNYSGGLKRHALIHTGKKPFRCNICDYGSRESRLLRTHMLIHVDEKPLKCNSCDYRCRRPAQLRIHAQRHTDGKPLECSHCEYKCLQTRSLKKHILTHQKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-