Dhop036572.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:74423360-74425984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00052 0.058 15.4 0.4 1 23 33 55 33 55 0.97 2 24 0.013 1.4 11.0 6.7 1 23 61 83 61 83 0.97 3 24 0.00051 0.056 15.4 5.1 1 23 89 111 89 111 0.97 4 24 0.0016 0.18 13.8 1.3 1 23 141 163 141 163 0.98 5 24 0.012 1.3 11.1 3.5 1 23 169 191 169 191 0.97 6 24 1.2e-05 0.0014 20.5 2.2 1 23 197 219 197 219 0.97 7 24 9.1e-05 0.01 17.8 1.1 2 23 250 271 249 271 0.96 8 24 0.0083 0.92 11.6 3.3 1 23 277 299 277 299 0.97 9 24 0.00051 0.056 15.4 5.1 1 23 305 327 305 327 0.97 10 24 0.019 2.1 10.5 1.9 1 23 357 379 357 379 0.98 11 24 0.0059 0.65 12.1 3.4 1 23 385 407 385 407 0.97 12 24 1.4e-05 0.0015 20.3 3.0 1 23 413 435 413 435 0.97 13 24 2.1e-05 0.0023 19.8 1.8 1 23 465 487 465 487 0.98 14 24 0.00027 0.03 16.3 1.8 1 23 493 515 493 515 0.97 15 24 3.9e-05 0.0043 18.9 3.5 1 23 521 543 521 543 0.98 16 24 0.0016 0.18 13.8 1.3 1 23 573 595 573 595 0.98 17 24 0.0059 0.65 12.0 3.4 1 23 601 623 601 623 0.97 18 24 0.00022 0.024 16.6 3.3 1 23 629 651 629 651 0.97 19 24 0.13 14 7.8 1.0 1 17 681 697 681 698 0.94 20 24 0.00027 0.03 16.3 1.8 1 23 709 731 709 731 0.97 21 24 0.0012 0.14 14.2 4.1 1 23 737 759 737 759 0.97 22 24 0.0016 0.18 13.8 0.9 1 23 765 787 765 787 0.97 23 24 0.019 2.2 10.4 1.1 2 23 794 815 793 815 0.96 24 24 0.00031 0.034 16.1 2.7 1 23 821 843 821 843 0.97
Sequence Information
- Coding Sequence
- ATGATGCAAGCCACCAAAACGACCGAACGCCGAATATTTAAAACTCGAAGAGGATCTACGGACAAGCACATTCTGACACATTCGGACGAAAAACCCTTCGCTTGTGAATTGTGCGGTCACAGATTCCGCATTGCCGGGGTCTTGAAACGGCATATCTtaacacacaccgacgagaagccattTAGTTGTGACcattgcgattacaaatgccatCGAGCTGGAGACTTGAAGAAACACAAGTTAATACACACTGACTTCAAGCCGTTCTGTTGTAAATACTGCGATTATAAGTGTCGACAAGTCGGGAATTTAAATCGTCACATTTTGATACACACCGATAAGGATCCGTTTAGCCGCCGTCTTAAATCCAGGCGAGTTGGAAATCGCAAACAGGTTCTGAAACATTCAGACGAAAAACCATTCAACTGTGAAATCTGCGGTTACAAGTGCCAAAAGGCCGGGGTCTTGAAGCagcacatgttaacgcacaccgacgagaagcggttcagttgcgatctttgcgattacaaatgccatCGAGCCGCAGACTTAAAAAATCAcaagttaatacacaccgacTTCAAGCCGTTCTGTTGTGAATACTGCGGTTATAAGACTCGACAAGCCGGGAATTTAAAGCGTCACATTTTGATGCACACCGAGAAGGATCCGTTTAGTTGCCGCCTTAAATCCAGGCGAGCCAGAAATGGCAAACACGTTCTGAAACATTCGGACGAAAAACCATTGATCTGTGAATCCTGCGGTTACAAGTGCCGAACGGCCGGGAACTTGAAGCTGCACATGTtaacacacaccgacgagaagcggttcagttgcgacctttgcgattacaaatgccatCGAGCTGCGGACTTAAAAAGTCACAGGTTAATACACACTGACTTCAAGCCGTTCTGTTGTAAATACTGCGATTATAAGTGTCGACAAGTCGGGAATTTAAATCGTCACATTTTGATACACACCGATAAGGATCCGTTTAGCCGCCGTCTTAAATCCAGGCGAGCCGGAAATCGCAAACAGGTTCTGAAACATTCAGACGAAAAACCATTCAACTGTGAAATCTGCAGTTACAAGTGCCAAAAGGCCGGGGTCTTGAAGCAGCACATGTtaacacacaccgacgagaagcggttcagttgcgacctttgcgattacaaatgccatCGAGCCGCAGACTTAAAAAATCACAGGTTAATACACACCGACTTCAAGCCGTTCTGTTGTGAATACTGCGGTTATAAGACTCGACAATCCGGGAATTTAAAGCGTCACATTTTGATGCACACCGAGAAGGATCCGTTTAGTTGCCGCTTTAAATCCAGGCGAGCCAGAAGTGGCGAACACGTTCTGAAACATTCGGACGAAAAACCATTCATCTGTGAATCCTGCGGTTACAAGTGCCGAACGGCCGGGAACTTGAAGCAGCACATGTtaacacacaccgacgagaagcggttcagttgcgacctttgcgattacaaatgccgtcGAGCTGCTGACTTAAAAAATCACAGGTTAATACACACTGACTTCAAGCCGTTCCGTTGTAAATACTGCGATTATAAGTGTCGACAAGTCGGGAACTTAAAGCGTCACATTTTGATACACACCGATAAGGATCCGTTTAGTCGCCGTCTTAAATCCAGGCGAGCCGGAAATCGCAAACATGTTGTGAAACATTCAGACGAGAAACCATTCAACTGTGAAATCTGCGGTTACAAGTGCCAAAAGGCCGGCGTCTTGAAGCAGCACATGTtaacacacaccgacgagaaacggttcagttgcgacctttgcgattacaaatgccatCGAGCCGGAGACTTAAAGAATCACAGGTTAATACACACCGACCTCAAACCATTCTGTTGTAAATACTGCAGTTATGAGACTCGACAATCCGGGAATTTAAAGCGCCACATTTTGATACACACCGAGAAGGATCCGTTTAGTTGCCGTCTTAAGTCCAGACGAGACGGAAATGGCAAACACGTTCTGAAACATTCGGACGAAAAACCATTCATATGTGAATTCTGCGGTTACAAGTGCCGGACGGCCGGGAACTTGAAGCTGCAGGTGTtaacacacaccgacgagaagcggttcagttgcgacctttgcgattacaaatgccgtcGAGCTGCAGACTTAAAAAATCACAggttaatacacaccgacgtCAAACCATTCTGCTGTGAATACTGCGATTATAAGAGCCGACACATCGGGAATTTAAAGCGACACATTTTAATACACATAGGCGATAAACCGTTTGCTTGCAATACGTGCGATTATAAAGGTCGGGAGCTATCGAAATTAAAACagcacatgttaacgcacaccgacgagaagccgttgagttgtgatctttgcgattataaatgccgaatcGTGTCGAAGTTGAAAATACACATGTTGATACATACCGATgaaaaaccgttcagttgtaatTTATGCGATTACAAGTTCAAGGAATTGAAATCGCTAAAACGACACGTGTCGAAGCATATGAATAAGAGTGCAAATAAGCATCATCCAAATGATGGCGATCATCCAAATGACACCGACGAGAAACTATTCGAAGAACCAGAAAAGCTGCAATGA
- Protein Sequence
- MMQATKTTERRIFKTRRGSTDKHILTHSDEKPFACELCGHRFRIAGVLKRHILTHTDEKPFSCDHCDYKCHRAGDLKKHKLIHTDFKPFCCKYCDYKCRQVGNLNRHILIHTDKDPFSRRLKSRRVGNRKQVLKHSDEKPFNCEICGYKCQKAGVLKQHMLTHTDEKRFSCDLCDYKCHRAADLKNHKLIHTDFKPFCCEYCGYKTRQAGNLKRHILMHTEKDPFSCRLKSRRARNGKHVLKHSDEKPLICESCGYKCRTAGNLKLHMLTHTDEKRFSCDLCDYKCHRAADLKSHRLIHTDFKPFCCKYCDYKCRQVGNLNRHILIHTDKDPFSRRLKSRRAGNRKQVLKHSDEKPFNCEICSYKCQKAGVLKQHMLTHTDEKRFSCDLCDYKCHRAADLKNHRLIHTDFKPFCCEYCGYKTRQSGNLKRHILMHTEKDPFSCRFKSRRARSGEHVLKHSDEKPFICESCGYKCRTAGNLKQHMLTHTDEKRFSCDLCDYKCRRAADLKNHRLIHTDFKPFRCKYCDYKCRQVGNLKRHILIHTDKDPFSRRLKSRRAGNRKHVVKHSDEKPFNCEICGYKCQKAGVLKQHMLTHTDEKRFSCDLCDYKCHRAGDLKNHRLIHTDLKPFCCKYCSYETRQSGNLKRHILIHTEKDPFSCRLKSRRDGNGKHVLKHSDEKPFICEFCGYKCRTAGNLKLQVLTHTDEKRFSCDLCDYKCRRAADLKNHRLIHTDVKPFCCEYCDYKSRHIGNLKRHILIHIGDKPFACNTCDYKGRELSKLKQHMLTHTDEKPLSCDLCDYKCRIVSKLKIHMLIHTDEKPFSCNLCDYKFKELKSLKRHVSKHMNKSANKHHPNDGDHPNDTDEKLFEEPEKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -