Dhop036760.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- znf711
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:76845618-76852490[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00063 0.07 15.1 0.3 1 23 110 132 110 132 0.98 2 31 0.023 2.5 10.2 0.1 1 23 136 158 136 158 0.98 3 31 0.027 2.9 10.0 2.9 1 23 192 217 192 217 0.96 4 31 0.021 2.3 10.3 0.2 1 23 223 246 223 246 0.92 5 31 6.6e-05 0.0073 18.2 1.0 1 23 253 275 253 275 0.99 6 31 0.8 88 5.3 0.2 2 23 280 300 279 300 0.87 7 31 0.011 1.3 11.2 2.2 1 23 306 328 306 328 0.96 8 31 0.029 3.2 9.9 2.6 1 13 334 346 334 347 0.91 9 31 0.02 2.2 10.4 0.1 1 23 416 438 416 438 0.96 10 31 0.002 0.22 13.5 0.1 1 23 442 464 442 464 0.98 11 31 0.018 2 10.5 1.7 1 23 470 492 470 492 0.98 12 31 0.0042 0.47 12.5 0.0 1 23 558 580 558 580 0.98 13 31 0.00081 0.09 14.8 0.3 1 23 584 606 584 606 0.98 14 31 0.039 4.3 9.5 0.2 1 23 612 634 612 634 0.96 15 31 0.033 3.7 9.7 2.1 1 23 640 665 640 665 0.96 16 31 0.00059 0.066 15.2 2.0 1 23 671 694 671 694 0.97 17 31 0.00068 0.075 15.0 1.4 1 23 701 723 701 723 0.99 18 31 9.1 1e+03 2.0 0.2 2 23 728 748 727 748 0.85 19 31 0.00029 0.033 16.1 0.5 1 23 754 776 754 776 0.98 20 31 3.5e-05 0.0039 19.1 5.3 1 23 782 804 782 804 0.97 21 31 1.1 1.2e+02 4.9 2.3 1 15 810 824 810 826 0.89 22 31 0.02 2.2 10.4 0.0 1 23 921 943 921 943 0.97 23 31 0.0044 0.49 12.4 0.2 1 23 947 969 947 969 0.98 24 31 0.05 5.5 9.1 0.7 1 23 975 997 975 997 0.98 25 31 0.011 1.2 11.2 3.5 1 23 1003 1028 1003 1028 0.96 26 31 0.02 2.2 10.4 0.6 1 23 1034 1057 1034 1057 0.93 27 31 9.9e-05 0.011 17.6 0.7 1 23 1064 1086 1064 1086 0.99 28 31 0.55 61 5.8 0.1 2 23 1091 1111 1090 1111 0.95 29 31 0.55 61 5.8 2.1 1 23 1117 1139 1117 1139 0.80 30 31 1.2e-06 0.00014 23.6 3.8 1 23 1145 1167 1145 1167 0.97 31 31 0.0001 0.011 17.6 1.7 1 21 1173 1193 1173 1194 0.95
Sequence Information
- Coding Sequence
- ATGCCGATATCATGGAATTTTCTGAATGGTGGCGAGCGGACTCCTCGAATTACTTCGAATGGCCCAACGTTGAAAGGGAAAATTAACTCCAGAAGGAACATCAAGTCTTCTGGAATTCGTCCGAAGAAGGTTGCTGTGGGTGTCAACACTAACTCGCGACGTAATAGGGTTAGGAAGCTTCCAGATGAGTACGTCAAGCGTTTCCTGTGCGAACTATGCAGCAAACCCGAATTGATGACGTTGAAAGAACTGAATCGACATTACCTCACGCACGGTCAGACGGGTCTGAGAAAATTCCGGCATCGCCGGTCCAAACCCGATCAGTTGTTCACTTGCGAAATCTGCTCGGAGAATCTGAATTCCTCAACCGACCTGCAGAGGCACGTGGAAACTCACGAAGACCAGTATTCTTGCGACGCGTGTAAAAGAGGTTTCAAGCAGATTATAGACTACATAATCCACGTGAGAATTCACAGCGACGACGATGTTTTTAGGTGCGCCCTCTGTGACTATCGTAACGAGAGCGCTTCGAGGATGAGAAGACACGTCCTGTGCCACGACAGGTTCAAGAACTATCGCTGTGACGTCGAGGGCTGCAACCGGACATTCACGATCTCCACTCACTTCGAGGAACACAAGAAGTACTTTCACACGGGCGAGAAATCGTACATTTGCGACGTCTGCGGTCAACGGTTCATGTACGAGCGAGTTCTAAACCGGCACAAAGTGGTCAACCACGACGTAGGTCCGAAGCAGTACAAGTGCAAGAAATGCGGCGAGGTATTCGCTAGTTACAACTTGCGCCGAAATCACATGAACGTCCACAAGCAAGGCGTCGTGTGCGGGACATGCGGAAAAACTATCAGTACGCCATACTTTAAAGTCCACGAGCGGATGCACACCGGCGAGAGGCCTTACGAGTGTAAGCATTGTGGGAAGGCGTTTCCCTGTCGGATGGTGCTTGCCCAACATGTGCAGACACATACCGGCTACAAACCGCACAAGTGCGATATTTGCGGGAAGTGTTTCACGCAGAGGGTACGATCATTCAAGCTTGTATTGAATCCGGAATTTTCAAACGACGCCTGCGGTGAGCATACTAATAATGTAAATTACTTATGGAAAGAAATAACCAACGAAGAATATCAAGTTGGCGCGGAAGCGTATTTGAAAGGCCGTAAAAATCGCCAAAAATGGCCGAAAGACATCGAAGGCTTGAAGGAGCTCCAGAAACGTGGCAGGTCGTTCGTCTGTGAAATCTGCTCCGGGAAGTTTTCTTCGCAGGAAACCCTAGACGGTCACATTGTAAGCCACGACGACCGTTACGTATGCGAAGTTTGCGAAAAGGGTTTTAAGAAAATCGTGGATTACACCGTGCACGTGCAGTCACATCGCGATGATAAATTGTACAAATGCCCCCTCTGTGACTACAACACCCCCAAAGCCCATCACATCGAGTCACACTTGCTCTCACACCAAGTCACCAAGAAATGCGAGTCACGACCTAAGAAAATCAGAAAGCTTCCAGATGAATCCGTCAAGCGCTTCCTGTGCGAGTTGTGCAGCGAACCTGAATTAATGACACTGACGGAATTGAACCGACATTACCTTACGCACGATCAAAGGGGCCTGAAGAAATACAGATATCGCCGGCGTAAAGAGGGCCAGTTGTTTCCGTGTGAAATCTGTTCGGAAAATCTAGATTCTTTGGTCGATCTACAGAGACACTTGGAGACCCACGAGGACCAATACAGCTGCGACGTGTGTAAAAGAGGTTTCAAGCAGATTATAGACTACATTATGCACATGAAAATCCACACGGACGATAAACTTTTTAGATGCGCCCTCTGTGATTATTCCAGCGAGAACGCTTCGAAGATGAAGAGTCACGTTCTCGGCCATGACAAGTTTAGGTGTTATCGTTGCGAAGTGCAAGGCTGCAATATGGCTTTCACCGTATCTACTCACTTCGAAGAACACAAAAAGTATTTTCATACCGGCGAAAAGTCATTCGTCTGCGACGTCTGCGGCCAAAAGTTCGTATACGAGCGAATGCTAAACCGACACAAGGAGACCTGTCACAACATAGGATCTAAACGGTACAAATGCAGAAAATGCGGCGAGGTATTCGCCAGCTTCAAGGAGCGTCGTAATCACCTGAAGGTCCACCAGGACGGCGTCGTGTGCGGAACATGTGGAAAGAAGGTGGGCATCATGTACTTCAAAGTACACGAGCGGATGCACACGGGCGAGCGGCCTTTCAAATGTGAGCACTGCGGGAAGGCGTTTCCCTCTAaacccatacttttacaacaTGAGCGAATCCACACCGGATATAGGCCGCACAGGTGCGAGTTTTGCGACAGGTGTTTTACGCAAAGGTCGAGTTTAGTGAGGCACGTACGGGgacataccggcgagaaacccTTCTCGTGCCACTTTTGCAGCAAAGGTTTCGTTTCTAAgTATAAATACATTGGAATTTTGACGAAGCTTAAATGGAACCCCCAAGATAACGATTATACATTAAAAGGAAAGAGTAGGACAAGCGGACGTGACATAAAATCTGGAATTTCGGaagtttctaaattaaataataaaatcaggAAGCTTCCTGATGAGTCCGTCAAACGTTTCCTGTGCGAACTGTGCAGCGAACCCGAATTGATGACGCTCATGGAACTGAATCGACATTACCTGACGCATGGCGAGACGGGTTTGAAGAAATTCAGATATCGCCAGACCAAGCCCAACCAGCTGTTCACTTGCGAAATCTGTTCGGAGAAAGTGGATTCTCTGATTGACCTAGAGAGGCACGTGGGAACTCACGAGGACCAATACTCTTGTGACGCGTGCAAAAGAGGTTTCAAACGGATCATAGACTACATCATCCACATGAAGATTCACAGCGAGGATAATTTCTTTAGGTGCGCCCTATGCGATTACAGCACCGAGAACGTCTCGAGGATGAAACGTCACGTTCTTCGCCACGATCAATTTACGTATTTTCGGTGTGAAGTGCAGGGCTGCAATCGGACCTTTACGATTTCCACTCACTACGAACAACACAGAAGATATTACCACGCGGGGAAGAGAACTTTCATTTGCGACGTCTGCGGACGGAAATTCTTGTACGAGCGTTATTTAAACAGACACAGAGTGGTCAGCCACGACATAGGTCCGAAGCAATTCAAGTGCAAAAAATGCGGCGAGATATTTGCGACCGTCGACATGCGTCGCAAGCACATGAACGTCCACAAGGAGAGCATAGTTTGCGGCACGTGCGGGAAAAAGGTCGGCGTGTCTTATTTTAAGGTGCACGAGCGCACGCACACCGGCGAGCGACCTTTCAAATGCGAACATTGCGAAAAGGCGTTCCCCTGTAAGACCATACTGGCACAACACGTGCTGATCCACACCGGATGTAGGCCGCACAAGTGCGAAATTTGTGGGAGATGTTTCACGCAAAGGTCGAGTTTGGTGAGGCACGTGCGGGGACACACCGGCGAAAAACCCTACTCGTGCCACTTCTGCGATAAAGGTTTCGTTTCCAAGTCGGCTCTTACTTCGCATAAAAAAAGTTGTACGggctaa
- Protein Sequence
- MPISWNFLNGGERTPRITSNGPTLKGKINSRRNIKSSGIRPKKVAVGVNTNSRRNRVRKLPDEYVKRFLCELCSKPELMTLKELNRHYLTHGQTGLRKFRHRRSKPDQLFTCEICSENLNSSTDLQRHVETHEDQYSCDACKRGFKQIIDYIIHVRIHSDDDVFRCALCDYRNESASRMRRHVLCHDRFKNYRCDVEGCNRTFTISTHFEEHKKYFHTGEKSYICDVCGQRFMYERVLNRHKVVNHDVGPKQYKCKKCGEVFASYNLRRNHMNVHKQGVVCGTCGKTISTPYFKVHERMHTGERPYECKHCGKAFPCRMVLAQHVQTHTGYKPHKCDICGKCFTQRVRSFKLVLNPEFSNDACGEHTNNVNYLWKEITNEEYQVGAEAYLKGRKNRQKWPKDIEGLKELQKRGRSFVCEICSGKFSSQETLDGHIVSHDDRYVCEVCEKGFKKIVDYTVHVQSHRDDKLYKCPLCDYNTPKAHHIESHLLSHQVTKKCESRPKKIRKLPDESVKRFLCELCSEPELMTLTELNRHYLTHDQRGLKKYRYRRRKEGQLFPCEICSENLDSLVDLQRHLETHEDQYSCDVCKRGFKQIIDYIMHMKIHTDDKLFRCALCDYSSENASKMKSHVLGHDKFRCYRCEVQGCNMAFTVSTHFEEHKKYFHTGEKSFVCDVCGQKFVYERMLNRHKETCHNIGSKRYKCRKCGEVFASFKERRNHLKVHQDGVVCGTCGKKVGIMYFKVHERMHTGERPFKCEHCGKAFPSKPILLQHERIHTGYRPHRCEFCDRCFTQRSSLVRHVRGHTGEKPFSCHFCSKGFVSKYKYIGILTKLKWNPQDNDYTLKGKSRTSGRDIKSGISEVSKLNNKIRKLPDESVKRFLCELCSEPELMTLMELNRHYLTHGETGLKKFRYRQTKPNQLFTCEICSEKVDSLIDLERHVGTHEDQYSCDACKRGFKRIIDYIIHMKIHSEDNFFRCALCDYSTENVSRMKRHVLRHDQFTYFRCEVQGCNRTFTISTHYEQHRRYYHAGKRTFICDVCGRKFLYERYLNRHRVVSHDIGPKQFKCKKCGEIFATVDMRRKHMNVHKESIVCGTCGKKVGVSYFKVHERTHTGERPFKCEHCEKAFPCKTILAQHVLIHTGCRPHKCEICGRCFTQRSSLVRHVRGHTGEKPYSCHFCDKGFVSKSALTSHKKSCTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -