Dhop036852.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:78150644-78158542[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00099 0.11 14.5 2.4 2 23 14 35 13 35 0.97
2 26 0.095 11 8.2 4.5 3 23 43 63 41 63 0.98
3 26 0.14 16 7.7 0.2 2 23 74 95 73 95 0.97
4 26 4.4e-05 0.0048 18.7 0.7 1 23 101 123 101 123 0.99
5 26 0.00042 0.047 15.6 1.7 1 23 129 151 129 151 0.99
6 26 0.00056 0.063 15.3 4.2 1 23 157 179 157 179 0.98
7 26 0.0008 0.089 14.8 1.4 1 23 185 207 185 207 0.98
8 26 0.013 1.5 10.9 2.8 3 23 250 270 248 270 0.97
9 26 0.2 22 7.2 2.6 2 23 277 298 276 298 0.95
10 26 0.00034 0.038 16.0 1.4 2 23 304 325 303 325 0.97
11 26 0.0087 0.96 11.5 2.1 3 23 333 353 331 353 0.98
12 26 0.00025 0.027 16.4 0.4 2 23 364 385 363 385 0.97
13 26 4.4e-05 0.0048 18.7 0.7 1 23 391 413 391 413 0.99
14 26 0.00056 0.062 15.3 1.7 1 23 419 441 419 441 0.98
15 26 0.00017 0.019 16.9 3.9 1 23 447 469 447 469 0.98
16 26 0.0008 0.089 14.8 1.4 1 23 475 497 475 497 0.98
17 26 8 8.9e+02 2.2 1.5 1 14 503 516 503 517 0.87
18 26 0.0027 0.3 13.1 2.5 3 23 540 560 538 560 0.98
19 26 0.23 25 7.1 2.5 2 23 567 588 566 588 0.95
20 26 7.6e-05 0.0085 18.0 2.1 2 23 594 615 593 615 0.97
21 26 4.3e-05 0.0048 18.8 0.1 1 23 621 643 621 643 0.99
22 26 0.00027 0.03 16.3 1.7 1 23 649 671 649 671 0.99
23 26 0.00021 0.023 16.6 2.7 1 23 677 699 677 699 0.99
24 26 0.0038 0.43 12.6 3.0 1 23 705 727 705 727 0.98
25 26 0.00021 0.024 16.6 4.4 1 23 733 755 733 755 0.99
26 26 0.0004 0.044 15.7 8.2 1 23 761 783 761 784 0.96

Sequence Information

Coding Sequence
ATGAAAGAACACGTATTGAACCATGCCGGTGATAAGCTTAAATGTACGAGCTGCGATTATGAATGCGTCCAGGTCGTAAGCTTGAAAAGACACATGAGGAGACACATTGACAAAGAACCGTTTGGATGTCATTTATGTGATTACAAAAGTAATTATCGCGGATGCTTGCAGAGACATTTACTGTCTCATAATTCGGGAAAACCATTGAAGTGCAAGCTTAAATGTACGAGTTGCGATTATGAATGTGTCCAAGCCGGAATCTTGGAAGGGCATATGAGGATACACACCGAGGAGAAACCGTTCAAATGTATGGTATGTGGTCATCAATTTCGCCTAGCCGGAGATTTAAAAGCGCACGTGAGGACGCACAGTGATGAAAGACCGTTTAAATGCAACCTGTGCGAATACGGATGTAACAAGCCTGCATCTTTGAGAGAACATATGATGAAGCACACCGGCGATAGACCATTCAAATGTGTGATATGCGGTTATTTATGTCGCCGAGCTCGACACTTGAAGCAACACATGACGATACACGGTGATGAAAGGCCGTTTAATTGTAATCTCTGCGAATACGGATGTAACGATGCCAGATCTTTAAAAGCGCATATGCTTAAGCACagcggcgagaagccgtttgcATGTGAATCTTGCGACTTTCGAACCAGAACGAATCACGACGATGAATATTTGTTTCAATCAAGAACCGTGTACTCGTCGAACGAAGCAGACAAGAGACACTTTGGATGTCATTTATGCGATTACAAAAGTAATTATAGCGGAAATTTGAAGAGGcatttcctgtctcacaacgaCGAAAAGCCACTGAAGTGCAACATTTGCGATTTTCGATGTAAATATTCCGCAAGGATGAAAGAACACGTATTGAACCACGCCGGTGATAAGCTTAAATGTGCGAGTTGCGATTATGAATGCGTCCAGGCCGTAAGCTTGAAAAGACACATGAGGAGACACACTGACAAAGAACCGTTTGGATGTCATTTATGCGATTACAAAAGTAATTATCGCGGATACTTGCAGAGACATTTACTGTCTCATAATGAGGAAAAGCCATTGAAGTGCAAGCTTAAATGTACGAGTTGCGATTATGAATGTGTCCAGGCCGGAACCTTGGAAGCACACATGAGGATACACACCGAGGAGAAACCGTTCAAATGTATGGTATGTGGTCATCAATTTCGCCTAGCCGGAGATTTGAAAGCGCACGTCAGGACACACAGTGATGAAAGACCGTTTAGATGCAACCTTTGCGAATACGGATGTAACAAGCCTGCGTCTTTGAAAGAACATATGATGAAGCACACCGGCGATAGGCCTTTCAAATGTGTGATATGCGGTTATTTATGTCGCCGAGCTCGACACTTGAAGCAGCACATGATGATACACGGTGATGAAAGGCCGTTTAATTGTAATCTGTGCGAATACGGATGTAACGATGCCAGATCTTTAAAAGCGCACATGCTTAAGCACAGCGGTGATAAGCCgtttaaatgtgaaacttgCGACTTTCGAAGCAGAACGAATCACGACGATCAATATTCATTTGAATCACGCAACGTGCACTCGTCGGAACAAGGAGACAAGAGACAATTCGGATGTCATTTGTGCGATTACAAAAGTAACTATCGCGGAAATTTGAAGAGGCATCTACTGTCTCACAACGACGAAAAGCCATTGAAGTGCAACGTTTGCGATTTTAGATGTAAATACACCGCAAGGTTGAAAGAACACGTATTGAACCACAGCGGTGATAAGCTTAAATGTACGAGTTGCGATTATGAATGCGTCCAAGCCGTAAGCTTGAAGAGGCACATGAGGACGCACACTGATGAAAAGCCGTTCAAATGTATGGTATGTGGCTATCAATTTCGCCTAGCCGGAGATTTGAAAGCGCACGTGAGGGTACACAGCGATGAAAGGCCGTTTAAGTGCAGCCTGTGCGAATACGGATGTAACAGTTCTGGATCTTTGAAAGAACACATGATGATGCACACCGGCGATAAGCCGTTCAAGTGTATGATATGCGGTTACTTGTGTCGCCGAGCTCGACAGTTGAAACTACACATGAAGATACACGGCGACGAAAGGCCGTTTAAGTGTAATCTCTGCGAGTACGGGTGTAACGATTCCAGATCTTTGAAAACGCACGTGCTTAAGCACACCGGTGATGCGCCGTTTACATGCGAGCTTTGCGACTATCGAAGCAGGACGCATCAAAATTTGAGAACGCATTTGCGGACGCACAGTGACGATAAGCCGTTCGAATGTGACCTTTGTAATTATAAGTGTAAGCATTCCGGAAGTTTAAAAAGGCATATAAGGAGACATCATTAA
Protein Sequence
MKEHVLNHAGDKLKCTSCDYECVQVVSLKRHMRRHIDKEPFGCHLCDYKSNYRGCLQRHLLSHNSGKPLKCKLKCTSCDYECVQAGILEGHMRIHTEEKPFKCMVCGHQFRLAGDLKAHVRTHSDERPFKCNLCEYGCNKPASLREHMMKHTGDRPFKCVICGYLCRRARHLKQHMTIHGDERPFNCNLCEYGCNDARSLKAHMLKHSGEKPFACESCDFRTRTNHDDEYLFQSRTVYSSNEADKRHFGCHLCDYKSNYSGNLKRHFLSHNDEKPLKCNICDFRCKYSARMKEHVLNHAGDKLKCASCDYECVQAVSLKRHMRRHTDKEPFGCHLCDYKSNYRGYLQRHLLSHNEEKPLKCKLKCTSCDYECVQAGTLEAHMRIHTEEKPFKCMVCGHQFRLAGDLKAHVRTHSDERPFRCNLCEYGCNKPASLKEHMMKHTGDRPFKCVICGYLCRRARHLKQHMMIHGDERPFNCNLCEYGCNDARSLKAHMLKHSGDKPFKCETCDFRSRTNHDDQYSFESRNVHSSEQGDKRQFGCHLCDYKSNYRGNLKRHLLSHNDEKPLKCNVCDFRCKYTARLKEHVLNHSGDKLKCTSCDYECVQAVSLKRHMRTHTDEKPFKCMVCGYQFRLAGDLKAHVRVHSDERPFKCSLCEYGCNSSGSLKEHMMMHTGDKPFKCMICGYLCRRARQLKLHMKIHGDERPFKCNLCEYGCNDSRSLKTHVLKHTGDAPFTCELCDYRSRTHQNLRTHLRTHSDDKPFECDLCNYKCKHSGSLKRHIRRHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-