Dhop038902.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065426.1:24159469-24167305[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00061 0.068 15.1 2.8 1 23 137 159 137 159 0.98
2 16 0.0094 1 11.4 5.8 1 23 165 187 165 187 0.97
3 16 0.00015 0.017 17.0 4.4 1 23 196 218 196 218 0.97
4 16 3.2e-05 0.0035 19.2 0.5 1 23 262 284 262 284 0.97
5 16 2.6e-06 0.00029 22.6 6.4 1 23 290 312 290 312 0.97
6 16 0.0006 0.066 15.2 4.4 2 23 333 355 332 355 0.97
7 16 5.6e-05 0.0061 18.4 4.1 1 23 416 438 416 438 0.97
8 16 0.00025 0.028 16.4 1.1 1 23 444 467 444 467 0.92
9 16 1.2e-05 0.0013 20.6 5.0 1 23 472 494 472 494 0.99
10 16 4.5e-07 5e-05 25.0 0.9 2 23 503 524 502 524 0.98
11 16 1.7e-07 1.9e-05 26.3 0.9 1 23 531 553 531 553 0.97
12 16 3.8e-05 0.0042 18.9 1.6 3 23 565 585 563 585 0.92
13 16 0.00034 0.038 15.9 5.1 1 23 591 613 591 613 0.99
14 16 1.6e-05 0.0017 20.2 1.8 1 23 619 641 619 641 0.96
15 16 1e-05 0.0011 20.8 0.2 1 23 647 669 647 669 0.99
16 16 0.00029 0.032 16.1 0.1 1 23 675 699 675 699 0.92

Sequence Information

Coding Sequence
ATGATAAATGACGGCGGCAGCAAACTAAGGATGGATAAAATATGTCGGTCGTGCATGAGCGAGGGCGCAGACATGCGAAATCTCTTCGAGATTAAAGAAGCCCTGGCCGGGCGGACCTTGCAGATCGCGGATATGTTGATGGCCTGCGCCTCCGTGGAAGTTAGGACGGGAGACGGCCTGCCGGCCCTCATTTGTTTACAGTGCGACATGAAGCTCTCGCTGGCCTTCGAGTTCAAGCAACTGTGCGAGAAGAGCGACTCGGCCTTGCGCGACCTGTCCAACCAGTGCAAGGAGGAGTGCATCGAGGTGAAGCCCGACGTGAACCTCCCCGAGCTCTACGACAACGACGACGTCTGTTCCGATTCGGATTCCGCCGAGGAGTCGACGAAGCGAAGCAAGAAGGACGCTTACAGCTGCGCCTACTGCCAGAAAACCCTGCGCTCCAAGAACGGCTACAAGCTGCACATGAAGAAGCATTCCGGCGAGAAGCTCCACTCCTGTCACATCTGCCAGTCCAAGTTCTCCAAGTCGAACCTCCTCAAGCACCTGCAGACCAGTCACAAGACGGACGCCGAGTCGCACAGTCACGTCTGCGACGAATGCGGGCTGTGTTTCAGCAAGGCGCATTATCTGGCCAAGCACGTCAAGTCGCACAGAGCGGAGCAAGAGCACGAGCAGGAGCAGGATATTAAGCAGGAGAACGCCGAGGAGTTCGACGCGAAGGAAAACTCGGGTGACTTTAAGGGGAGCCTCGAGCACTTGGACAAGGAGAAGGGGCAGAAGTTCGATTGTAATTACTGCGGGAAGGTGCTGACGACGTTCGTCGGGCTTAAGATACACCTGCGGAGGCATACGGGGCACAACTTACATCCGTGTACTATTTGTAAAAAGTCCTTTACGAAAAGCAACCACCTGAAGCGCCACATGCTGACGCATGGGGTTAAGATCGAACTGCAGAAGCCGTTGGACAAGCGAGACGAGAAAGACAAGGTGATGGAGTGCGAGTTTTGCGACAGGAAGTTCAAGTACAGGAAGAGCTTCAGCCACCACATGCAAACCGAACACGGCATATCGGACGACAGCGACGCCCCCCTCAGCCTGCTCACGCCGTCCAAGCTCGACCCGGACAAAGCGGAGGATTCACTGGAAAAGGATGAACTCGATTCGGCCGGCAGCGATACCGGCCACTTCGACGCTCAAATCGACGACGACATGATCTTGATGAGCACGAAGAAGGCCAAGGTGTACACGTGCCACGTGTGCGAGGCGAAATTCGTGAGGTCCAACCACCTGACCCGCCACATGACCTTGCACCGGGCGGTGCTCGTCCACAAGTGCGAGCGGTGCGAAAAGGCGTTCGCCACCCCCGAATACCTAACCAAGCACAACCAGGAGGACCACATCGATAAGCCGTACACGTGCACCATTTGTGATAAGACGTACTGTCGAGGGGAACACCTGATACGCCACCTCAAGACGCACCTGAATCCCACGGAGATCGACGTCAAGTGTTCGATTTGCGAAAGAGTTTTTAGTAGATCCGATCACCTAGCCAGGCACATAAAAATTCACCTGCAGCAAGACAAGCGGCACGTCTGCGGCGAATGCGGAAAGGCGTTCAACCGGCTGGACAACCTTAAAACCCACCAAAGAATACACACGGGGCAGAAGGACACGTCGAAGCTCCACCTGTGCATCTACTGCGGCAAGGAATTCAATAACTCGAGCAATATGATCGTTCACATGCGACGGCATACCGGCGAGAGGCCTTACAAGTGTAGTCAGTGCGGCAAGGGATTCCCCCGCTCGCACGATCTCAAGTGCCATGAAAGAACCCACTCGGGTGAGAAACCCTACCTGTGCACGCTGTGCGGAAAGTCGTTTAATAAAAGCAACAAATtgttgcgtCACACGAGAGTCCACACGGGCGAGCGTCCTTACGTCTGCAACCTTTGCGCCAGGGCTTTCACCCAATCAAACGACTTGGCCCTCCACATGCGAAGGCACACCGGTTCTCGGCCGTACGCCTGTGGGGTGTGCCCCGCCCGTTTCATCCAGTCCGGCCAACTGAAAGCGCACAGGCGTTCCACCGGTCACTGGATGGAGACCCAACCGGACTTGAAAGGGGGCCACCGAGTCGAGCCGGTCGTCCCGATGGGCGAGCCGATCCCCATCAAGTTCAAGACGCACGGGAAGAAGAAGTCCGTCGAGAAGGAGGAGGACGACTGCAACGAGAACGGGGAACCCCGGATCGTCGGGACTTTGAGTTTACCGGCGGGGGTTCAGATACAGCCGCTCGTGCTCGAGAGCGAGAAGATTTTGCGCCAGTACGAGCACGCCGGGTTCGTCGAGTACATAAATCCGGAGAACGTCGACGACGCCGGCGAATGCAAAGTACAAAACTACACCCTCGCCAACCTCAAGTGCGAAACGTCGACGCCGGGCGACGCAGAGAAAATCAACAAGCTGAGCCAGGCGGAGACATCCACATTCCAGACTTACTCCGGCGTTTCGACGACCACCACCACCTTCACCACCAGCGAGGGCTACGGATATCAGTCTTACGTGTAA
Protein Sequence
MINDGGSKLRMDKICRSCMSEGADMRNLFEIKEALAGRTLQIADMLMACASVEVRTGDGLPALICLQCDMKLSLAFEFKQLCEKSDSALRDLSNQCKEECIEVKPDVNLPELYDNDDVCSDSDSAEESTKRSKKDAYSCAYCQKTLRSKNGYKLHMKKHSGEKLHSCHICQSKFSKSNLLKHLQTSHKTDAESHSHVCDECGLCFSKAHYLAKHVKSHRAEQEHEQEQDIKQENAEEFDAKENSGDFKGSLEHLDKEKGQKFDCNYCGKVLTTFVGLKIHLRRHTGHNLHPCTICKKSFTKSNHLKRHMLTHGVKIELQKPLDKRDEKDKVMECEFCDRKFKYRKSFSHHMQTEHGISDDSDAPLSLLTPSKLDPDKAEDSLEKDELDSAGSDTGHFDAQIDDDMILMSTKKAKVYTCHVCEAKFVRSNHLTRHMTLHRAVLVHKCERCEKAFATPEYLTKHNQEDHIDKPYTCTICDKTYCRGEHLIRHLKTHLNPTEIDVKCSICERVFSRSDHLARHIKIHLQQDKRHVCGECGKAFNRLDNLKTHQRIHTGQKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCNLCARAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVVPMGEPIPIKFKTHGKKKSVEKEEDDCNENGEPRIVGTLSLPAGVQIQPLVLESEKILRQYEHAGFVEYINPENVDDAGECKVQNYTLANLKCETSTPGDAEKINKLSQAETSTFQTYSGVSTTTTTFTTSEGYGYQSYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466607; iTF_01258293;
90% Identity
iTF_01258293;
80% Identity
-