Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065423.1:23283463-23286938[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0022 0.24 13.4 0.4 2 23 113 134 113 134 0.97

2 16 0.00016 0.018 17.0 1.1 3 22 138 157 136 157 0.95

3 16 0.0044 0.49 12.5 0.2 3 23 179 200 178 200 0.96

4 16 0.0017 0.19 13.7 0.7 2 23 218 239 217 239 0.96

5 16 0.0068 0.75 11.9 3.8 1 23 245 267 245 267 0.98

6 16 1.9e-05 0.0021 19.9 1.8 1 23 275 297 275 297 0.98

7 16 1.9e-08 2.2e-06 29.3 1.0 1 23 302 324 302 324 0.98

8 16 0.0045 0.5 12.4 5.2 1 23 330 352 330 352 0.98

9 16 4.6e-06 0.00051 21.8 0.5 1 23 358 380 358 380 0.98

10 16 0.00061 0.067 15.2 2.1 1 23 386 408 386 408 0.97

11 16 1.5e-06 0.00016 23.4 2.3 3 23 416 436 414 436 0.96

12 16 2e-07 2.2e-05 26.1 0.1 2 23 442 463 441 463 0.98

13 16 3.5e-05 0.0039 19.0 1.3 1 23 469 491 469 491 0.97

14 16 0.00015 0.017 17.1 0.3 3 23 499 519 497 519 0.97

15 16 7.3e-08 8.1e-06 27.5 1.3 1 23 525 547 525 547 0.99

16 16 0.11 12 8.1 0.0 1 19 553 571 553 574 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0022	0.24	13.4	0.4	2	23	113	134	113	134	0.97
2	16	0.00016	0.018	17.0	1.1	3	22	138	157	136	157	0.95
3	16	0.0044	0.49	12.5	0.2	3	23	179	200	178	200	0.96
4	16	0.0017	0.19	13.7	0.7	2	23	218	239	217	239	0.96
5	16	0.0068	0.75	11.9	3.8	1	23	245	267	245	267	0.98
6	16	1.9e-05	0.0021	19.9	1.8	1	23	275	297	275	297	0.98
7	16	1.9e-08	2.2e-06	29.3	1.0	1	23	302	324	302	324	0.98
8	16	0.0045	0.5	12.4	5.2	1	23	330	352	330	352	0.98
9	16	4.6e-06	0.00051	21.8	0.5	1	23	358	380	358	380	0.98
10	16	0.00061	0.067	15.2	2.1	1	23	386	408	386	408	0.97
11	16	1.5e-06	0.00016	23.4	2.3	3	23	416	436	414	436	0.96
12	16	2e-07	2.2e-05	26.1	0.1	2	23	442	463	441	463	0.98
13	16	3.5e-05	0.0039	19.0	1.3	1	23	469	491	469	491	0.97
14	16	0.00015	0.017	17.1	0.3	3	23	499	519	497	519	0.97
15	16	7.3e-08	8.1e-06	27.5	1.3	1	23	525	547	525	547	0.99
16	16	0.11	12	8.1	0.0	1	19	553	571	553	574	0.91

Sequence Information

Coding Sequence: ATGTCACTTGCTACAGTTCAGATTGCCTACGATGATGGCTTGCCCCACAATATTTGTACAGATTGTGCAAGTCATGTAGAAaatgcttatttatttaagatgAAGTGTGAACAGTCAGAATTAACACTCAGACGTTACTTGTCTTCTGACacaaataatttacaacaaGGAAAAACTGCCAAGAAACAAGACTGCATGTATATGACCGCAACATCAGACACACAAGAAAGCAATTATCAAGATGATCACGCAGATGATTCTTACAATGAACCATATCCAATAATTACAACTGAGAATCTATTAGACTGCAACGTTGAATCTTATAAAAAAGCAGAAGAATGTGAGATTTGCGGTAGTAAATTTGATAGTACGCAGGAGTTTAATGATCATTTACAGACGCACAATTCAAATTGCAAGATTTGTTCCAAAACATTTCATACAATAGATGAAttaaacagacacataaaaacATGTAGTTTAGGAGCTGAACAAGTACAACAAACGTGTAAGAAAGATAACAATGAAACAAACATTTGTACAGTATGCGATGAGAAATTTTTTGGAAGCAACAAACTCATTGATCACATGTTGAAGGAACatacagaaaaagaaaacaatgacGTTGAAGAGAAGCCTAAAGAAGAAAGaTTAATGTGCAATATCTGCAACAAAACATATTTAAAGCCCTGTAACTTAGCAGCGCACATGGGCACTCACACTGGTAATAAACCATTCGAATGCAAGATCTGCAGAAAACGGTTCACTCAAGGAAGAGCATATGCATGCCACATGCGTACTCACCTGGACTCAATGGAGAAACCGCACAAATGCACCATTTGCAGCAAAGAGTTTCCAGAAGAATCCCAGCTGGTCACTCACATGAAGAAACACTGTGGCCAATCGTTTACCTGCACGGTGTGCGGGAAAAGTTACTCAAATTCTGGAAACTTAAAGTCGCATATGCGATTACACACAGGAGATAAACCTTACTCGTGCCACCTATGCGGAAAGAAATTTGCTCAAAGCAATGCGCACAGCTATCATATGAAGACGCATTTAGGGGAAAAGCCATTTGTGTGTGAGCTATGCTCTAAGGCATTCACGACAAATGGCCAGCTGGTTAATCATCGGAGGTTGCACACTGGGGAGAGGCCTTTCGCTTGCACCATTTGTTCAAAGAGGTTCACACAGAAAGTTGCACACACTATACATATGATGACACATACGGGGAATAAACCACATCTTTGTAGTATTTGTGGCAAAAAGTATTCACAGAACAGCCAGCTGGTGCAACACATGAAATCACATACAGGTGAAACACAACAATGTAGCATTTGTGGAAAAGGTTATTCGACAGCGGGTAATTTAGCTGCTCACATGAAAACCCACAGTGGTATCAAACCCCACATTTGCAGCATATGCAGCAAGGGCTTTTACGTAGCCAATAAATTAGCGAAACACATGCGCACCCATACAGGAGAACGTCCTTATGGTTGTTCAATTTGTCCAAAGCGTTTTACCAGCTCGGATGTTATGAAAGTGCACACACGGATTCACACTGGTGAAAGACCTTATCGCTGTCAAGTGTGTTCGAAAGGTTTTACAAATAATTCCCAGCTCACTGTGCACATGCGTTCTCACACCGGAAACAGGCCGTTTGTGTGCAATGTGTGCTTTCAAGGGTTTACAACAGCGGCAGGTATGGCAGTGCATTCCAATAATTGCAGTGGTGGAATTCGGAGGATATCCGATGCTAGTGGTGTTGTGAGTAGTTTGATTGTGAAAAAGAGTTTTTCATAA
Protein Sequence: MSLATVQIAYDDGLPHNICTDCASHVENAYLFKMKCEQSELTLRRYLSSDTNNLQQGKTAKKQDCMYMTATSDTQESNYQDDHADDSYNEPYPIITTENLLDCNVESYKKAEECEICGSKFDSTQEFNDHLQTHNSNCKICSKTFHTIDELNRHIKTCSLGAEQVQQTCKKDNNETNICTVCDEKFFGSNKLIDHMLKEHTEKENNDVEEKPKEERLMCNICNKTYLKPCNLAAHMGTHTGNKPFECKICRKRFTQGRAYACHMRTHLDSMEKPHKCTICSKEFPEESQLVTHMKKHCGQSFTCTVCGKSYSNSGNLKSHMRLHTGDKPYSCHLCGKKFAQSNAHSYHMKTHLGEKPFVCELCSKAFTTNGQLVNHRRLHTGERPFACTICSKRFTQKVAHTIHMMTHTGNKPHLCSICGKKYSQNSQLVQHMKSHTGETQQCSICGKGYSTAGNLAAHMKTHSGIKPHICSICSKGFYVANKLAKHMRTHTGERPYGCSICPKRFTSSDVMKVHTRIHTGERPYRCQVCSKGFTNNSQLTVHMRSHTGNRPFVCNVCFQGFTTAAGMAVHSNNCSGGIRRISDASGVVSSLIVKKSFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466602;
90% Identity: iTF_00466602;
80% Identity: -