Dhop036409.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:72486469-72509457[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.25 27 6.9 6.2 1 23 12 34 12 34 0.98
2 35 0.029 3.3 9.8 4.0 3 23 42 62 40 62 0.97
3 35 0.0014 0.16 14.0 3.1 1 23 68 90 68 90 0.97
4 35 0.0066 0.73 11.9 1.4 1 23 96 118 96 118 0.97
5 35 0.00026 0.029 16.3 4.2 1 23 124 146 124 146 0.98
6 35 0.00035 0.038 15.9 3.7 3 23 154 174 152 174 0.98
7 35 0.11 12 8.1 1.5 3 23 182 202 180 202 0.97
8 35 0.025 2.7 10.1 1.5 1 23 208 230 208 230 0.98
9 35 0.00051 0.057 15.4 4.0 1 23 278 300 278 300 0.98
10 35 0.00015 0.017 17.0 1.7 1 23 306 328 306 328 0.99
11 35 1.1e-05 0.0012 20.7 4.7 1 23 334 356 334 356 0.99
12 35 0.096 11 8.2 0.7 1 23 362 384 362 384 0.96
13 35 2.5e-05 0.0027 19.5 3.7 1 23 409 431 409 431 0.98
14 35 0.00013 0.014 17.3 4.4 1 23 437 459 437 459 0.98
15 35 0.003 0.33 13.0 1.7 3 23 467 487 465 487 0.97
16 35 0.00027 0.029 16.3 3.6 2 23 494 515 493 515 0.97
17 35 0.003 0.33 13.0 1.7 3 23 523 543 521 543 0.97
18 35 0.00018 0.02 16.8 1.9 2 23 550 571 549 571 0.96
19 35 0.0022 0.24 13.4 6.0 1 23 577 599 577 599 0.97
20 35 0.00014 0.015 17.2 2.2 2 23 606 627 605 627 0.96
21 35 0.0021 0.23 13.5 4.5 1 23 633 655 633 655 0.98
22 35 0.041 4.5 9.4 4.6 1 23 719 741 719 741 0.98
23 35 0.00045 0.049 15.6 1.5 1 23 747 769 747 769 0.98
24 35 0.0049 0.54 12.3 3.8 1 23 858 880 858 880 0.98
25 35 0.00061 0.067 15.2 3.8 1 23 886 908 886 908 0.98
26 35 0.14 16 7.7 2.9 2 23 915 936 914 936 0.97
27 35 0.03 3.3 9.8 2.3 1 23 1015 1037 1015 1037 0.98
28 35 0.00025 0.027 16.4 2.2 1 23 1043 1065 1043 1065 0.98
29 35 0.0044 0.49 12.4 1.5 1 23 1071 1093 1071 1093 0.97
30 35 0.00032 0.035 16.0 0.3 1 23 1099 1121 1099 1121 0.99
31 35 0.0042 0.47 12.5 0.5 1 23 1127 1149 1127 1149 0.97
32 35 0.045 5 9.3 7.5 1 23 1155 1177 1155 1177 0.98
33 35 0.00064 0.07 15.1 0.6 2 23 1184 1205 1183 1205 0.96
34 35 6.4e-05 0.0071 18.2 0.6 1 23 1211 1233 1211 1233 0.98
35 35 0.038 4.2 9.5 3.7 1 23 1239 1262 1239 1262 0.97

Sequence Information

Coding Sequence
ATGAATATTGCGACACACTCGGGCGAGAGACCGTTTACTTGCGAATTTTGCGGTTGCAAATACCTACACGCCCGAAGGCTAAAGCGGCACATGCTAACACACACCGACGAAAAATCATTCGGTTGTAGTTCCTGCGACTTTCGCTGCAAGCAGAAGCAAAACTTAACGCAGCACTTACTGTCGCACACCGCCGAGAAGCCCTTCGCCTGTAAACTTTGCGATTACAGATGCGGCCAATCCAGAAATCTGAAGCGGCACGTCTTGAGGCACTCCGACGAGAAGCCCTTCGCCTGTAAACTCTGTGATTACAAATGCCAACGGGCGGACTACATAGAACggcacatgttaatacacaccgacgagaagccctTCCGTTGCACTTTCTGCGGCTACAAGTGCCGACAATCCGAGAATTTGAAGATGCACGTGCTGACACACACCGACGAAAAACCGTTCGGCTGTAagctttgcgattataagtgccgacaAAACGGAACGCTGAAGCGTCACATGTTGACTCACACGGGCGAAAAGCCCTTCGGCtgcgacctttgcgattacaaatgccgacgaATCGAAGTCCTGAAGCGACACACGTTGATTCACACCGATGAGAAACTTTTCAGTTGCGATCTCTGCCAGTTCGAATGCCGACGGCCCGAACGATTGGACGAGCACATGTTAACGCACGGCGAGGAGAAACCGATCGgctgcgatctttgcgattacaagtgccgacAGACGGGAAGATACCAGCAGAATACTGAATATCAACATGTGACAAACACCGGCGAAAATCCGCACGTGTTAAGATACGCCAACGAGAAGCCTTTCAGTTGTACTTTCTGCAATTATAAATGCGAACAACCCGGAAAACTGAAACGGCACATGCTAACGCACACCAAGGAGAAGCGTTTCCGTTGTACCTTGTGCGATTACAAAAGCCAACAATCCGGAAACCTGAAGCagcacatgttaacgcacaccgacgagaagcctttCACTTGTACTTTGTGCGGTTGTAAATTCAAACAATCCGGGAAACtgaaacggcacatgttaaCACATACCGAGGAGAAGCCCTTCGCTTGCGTGCTCTGCAATTACCAATGCCTACGGGCGCCCAGCTTGGAACGGCACATGCTAACGCACACCAATGAGAAGCCCTTCGGATACCAGTGGAATATTAAATATCAACGTGTGACACACCCCGACGAGAAGCCCTTCAGTTGTACTTTGTGCGATTACAAATGTAATCAATCGGGAAACTTGAGGCGGCACATGTTAACACACGCCAGCGAGAAACACTTCAGCTGTACCTtgtgcgattacaaatgcaagCAGTCCGGAAACATGAAACGacacatgttaacgcacaccAACGAGAAGCCCTTCGGTTGTGTActctgcgattacaagtgcTCGCAAGCGCTAAGCTTAAAACGGCACATGTTAACACACACCAGCGAGAAACACCTCAGCTGTACCTTGTGCGATTACAAGTGCAAGCAGTCCGGAAACATGAAACGacacatgttaacgcacaccAACGAGAAGCCCTTCGGTTGTGTActctgcgattacaagtgcTCGCAAGCGCTAAGCTTAAAACggcacatgttaacgcacaccAACGAGAAGCCCCTAAGTTGCACTTTCTGCGACTACAAATGCCGACAACCCGAAAATTTGAGAGCGCACATATTGAAACACACCGGCAAAAATCCGTTCTgctgtaatctttgcgattataaatgccgttATAACGGTGCATTGAGGCGTCACATGTTAAGACATACAGATGAGAAACCTGTCAGTTGTgaactttgcgattacaagtgccgacAAAAGGAATACCTGAAGAGGCACATGTTGATACACACCGATGAGAAACCtttcagttgcgatctttgcgattgcAAGTGCCGACGATCGGATGAATTGGATCagcacatgttaacgcacaGCGGCGAGAAACCGATTGGATACCAGCAGAGTCTTGAATGTCAAGTTGTAAACAACCAGACAGAGTGTGGAATGTGCGGCCCCAAATTTAAATCTCACAAGTGTAACCACGTGTTGATACATACCGAAGAGAAACCGCTCAAAACCGGTCATCAATTCCGAGAAGCgaaacacaccgacgagaaaccatACAGCTGTGAATCTTGCGGTTGCAAATACCTGCACGCTCAGAGTTTAAAACGGCACATGTTAACACACACCGACGTGAAACCCTTCAGTTGtaacctttgcgattacaaaagcCAACAAAAGGGATACCTGAAGAGGCACATGTTGATACACTCCGATGAGAAACCTTTCAGTTGCGAGCTTTGCGATTGCAAATGTCGACGAGCATACCGGCGGAGTTTTGAATATCAAGTTGTAAACAACCTGACAGTTTGTGAAATGTGCGGCCCCAAATTTAAATCTCACAAATGTAACCACGTCTTGAAACATGCGTTCAAAATCGGTCGTCAATTCCGAGAAGCAGAACGGCACATCGTAAAACACACCGACGAAAAGCAGCACATGTTAACACACCGTGAGAGTGATACtaagaaaccgttcagttgtgatgtcTGCGATTACAGATGCCGACAACGCAGAAGGTTGAAAGAGCACTTATtaacacacaccgacgagaagccctTCAGTTGTACCTTCTGTGATTACAAATGCAGACAGTCTGGACAATTGAAAGGACACATGTTAACGCACTCCGATGAGAAGCCGATCCGCtgtgatttttgcgattataaatgccggctgAGCGGAACAATGAAGCGGCACGTGTTAagacacaccggcgagaaacgcTTCGCGTGTGGTCTTTGTGGTTACAAGAGCCCGGAAGCCGGAAGCACGCTAAACAATTCTAACGATTTTAAAAGCTCGGCCGCCGGCGAGAAATTTGTATTTCAATGTATAGTCTGCAACTATGACATCCTCAGCGAAAAAGAACTTCGATACCACGTCAAGCAAGTGCACGTCACCAAGGAATTCAAAGAGAAGGCCAAGGCCTGCGGCGAGCCGTGGTACAGATGCGTCGCTTGCGATTACACGTGTTCGAAAGCCTCGCGTTTAATCCAGCATTACTCCacgcataccggcgagaagccctTCAGGTGCAACAAGTGCACCGCGAGATTCTCCCGGATTTACTCACTGAAGATGCACCTGCTGACGCACACCGACGAGTTAAACTTCTCGTGCGTCAGTTGCGGGTTAAAATTCAAGTACCCCCAACGGCTGAGGCAGCACATGTACTCTCACATCGAGGGTGTACCCTACACGTGCGACAGGTGCAGCTTGAGCTTCGTCGAGGGCAGCGAGTTGCAGAAGCATCTGAGGATACACGCCGACGACAGGCCTTTCGCCTGTGAATTCTGCGAAGCCAAGTACAAATCCGTGGGCCTCCTGAATAAGCACATGTATACTCACACCGGTGTGAAACGTTACGAGTGCGAACTTTGTTCCTGTAAGTGTCGCACCAGGGAGCACCTGAAACTCCACATGTACGTCCACACGAACCAGAAGCCCGTCGTCTGCAGCGTTTGTAACGCGGCGTTCAAGTCCGAGCATCATTTAAGGGGGCACATGGCCGTGCACGAGGACGATAAGCCCTTTAAATGTGACGTGTGCGGTTTTGCGTTCAAGTCGTCTAGAAATTTAAGACCGCACCTGTTGACGCACACCGAGGATAAGCCCTTCAAATGTACGAGCTGCAGTTACCAATGTATTAGGGCGAAATATTTGAAAGCGCACATTGAAAAGAAACATGTAATATAA
Protein Sequence
MNIATHSGERPFTCEFCGCKYLHARRLKRHMLTHTDEKSFGCSSCDFRCKQKQNLTQHLLSHTAEKPFACKLCDYRCGQSRNLKRHVLRHSDEKPFACKLCDYKCQRADYIERHMLIHTDEKPFRCTFCGYKCRQSENLKMHVLTHTDEKPFGCKLCDYKCRQNGTLKRHMLTHTGEKPFGCDLCDYKCRRIEVLKRHTLIHTDEKLFSCDLCQFECRRPERLDEHMLTHGEEKPIGCDLCDYKCRQTGRYQQNTEYQHVTNTGENPHVLRYANEKPFSCTFCNYKCEQPGKLKRHMLTHTKEKRFRCTLCDYKSQQSGNLKQHMLTHTDEKPFTCTLCGCKFKQSGKLKRHMLTHTEEKPFACVLCNYQCLRAPSLERHMLTHTNEKPFGYQWNIKYQRVTHPDEKPFSCTLCDYKCNQSGNLRRHMLTHASEKHFSCTLCDYKCKQSGNMKRHMLTHTNEKPFGCVLCDYKCSQALSLKRHMLTHTSEKHLSCTLCDYKCKQSGNMKRHMLTHTNEKPFGCVLCDYKCSQALSLKRHMLTHTNEKPLSCTFCDYKCRQPENLRAHILKHTGKNPFCCNLCDYKCRYNGALRRHMLRHTDEKPVSCELCDYKCRQKEYLKRHMLIHTDEKPFSCDLCDCKCRRSDELDQHMLTHSGEKPIGYQQSLECQVVNNQTECGMCGPKFKSHKCNHVLIHTEEKPLKTGHQFREAKHTDEKPYSCESCGCKYLHAQSLKRHMLTHTDVKPFSCNLCDYKSQQKGYLKRHMLIHSDEKPFSCELCDCKCRRAYRRSFEYQVVNNLTVCEMCGPKFKSHKCNHVLKHAFKIGRQFREAERHIVKHTDEKQHMLTHRESDTKKPFSCDVCDYRCRQRRRLKEHLLTHTDEKPFSCTFCDYKCRQSGQLKGHMLTHSDEKPIRCDFCDYKCRLSGTMKRHVLRHTGEKRFACGLCGYKSPEAGSTLNNSNDFKSSAAGEKFVFQCIVCNYDILSEKELRYHVKQVHVTKEFKEKAKACGEPWYRCVACDYTCSKASRLIQHYSTHTGEKPFRCNKCTARFSRIYSLKMHLLTHTDELNFSCVSCGLKFKYPQRLRQHMYSHIEGVPYTCDRCSLSFVEGSELQKHLRIHADDRPFACEFCEAKYKSVGLLNKHMYTHTGVKRYECELCSCKCRTREHLKLHMYVHTNQKPVVCSVCNAAFKSEHHLRGHMAVHEDDKPFKCDVCGFAFKSSRNLRPHLLTHTEDKPFKCTSCSYQCIRAKYLKAHIEKKHVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465605;
90% Identity
iTF_00465605;
80% Identity
iTF_00465605;