Dhop036403.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:72411880-72426027[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.00073 0.08 14.9 0.6 1 23 14 36 14 36 0.98
2 31 3.1e-05 0.0034 19.2 0.2 1 23 42 64 42 64 0.98
3 31 0.0001 0.011 17.6 4.1 1 23 70 92 70 92 0.97
4 31 0.0026 0.29 13.2 3.6 1 23 98 120 98 120 0.98
5 31 0.00073 0.081 14.9 2.1 1 23 126 148 126 148 0.98
6 31 1.1 1.2e+02 4.9 3.3 1 23 154 176 154 176 0.98
7 31 0.00031 0.034 16.1 0.8 1 23 182 204 182 204 0.99
8 31 4.1e-05 0.0045 18.8 2.0 1 23 210 232 210 232 0.99
9 31 0.0042 0.47 12.5 2.5 1 23 286 308 286 308 0.97
10 31 0.03 3.3 9.8 2.1 3 23 316 336 314 336 0.97
11 31 0.023 2.5 10.2 0.3 1 23 343 365 343 365 0.98
12 31 0.00021 0.024 16.6 0.6 3 23 373 393 371 393 0.98
13 31 0.012 1.3 11.1 1.3 3 23 401 421 399 421 0.98
14 31 0.00018 0.02 16.8 1.4 1 23 427 449 427 449 0.98
15 31 0.00051 0.056 15.4 1.7 1 23 455 477 455 477 0.98
16 31 0.004 0.44 12.6 2.0 1 23 483 505 483 505 0.99
17 31 0.11 12 8.1 1.9 2 23 551 574 550 574 0.89
18 31 6.1 6.8e+02 2.6 6.6 2 23 582 603 581 603 0.96
19 31 4.6e-06 0.00051 21.8 2.9 1 23 609 631 609 631 0.98
20 31 0.013 1.5 10.9 4.9 3 23 639 659 637 659 0.98
21 31 0.0011 0.13 14.3 1.1 2 23 666 687 665 687 0.97
22 31 0.0043 0.47 12.5 5.3 1 23 693 715 693 715 0.98
23 31 3.6e-05 0.0039 19.0 3.6 1 23 721 743 721 743 0.99
24 31 0.02 2.3 10.4 3.5 1 23 791 813 791 813 0.98
25 31 0.072 7.9 8.6 0.4 3 23 821 841 819 841 0.97
26 31 0.00049 0.054 15.5 0.6 1 23 875 897 875 897 0.97
27 31 0.025 2.8 10.1 1.6 1 23 903 925 903 925 0.96
28 31 9e-05 0.01 17.8 1.1 2 23 932 953 931 953 0.97
29 31 0.0006 0.067 15.2 4.0 1 23 959 981 959 981 0.99
30 31 0.00059 0.066 15.2 1.4 1 23 987 1009 987 1009 0.99
31 31 0.00012 0.014 17.3 2.0 1 23 1015 1037 1015 1037 0.99

Sequence Information

Coding Sequence
ATGAAAGAGCACATCAAGATACATTCCGACGAGAAGCCCTACATCTGTGAGATTTGCAGTTACAGTTGCCGATACGCCGGAGGTCTTAGGtatcacatgttaatacacactGTCGGAAAGCAGTTCGTTTGCGACCGTTGCGGTCGTAGATTCTACACGGTAGTTTTATTGAAGGCTCACATGGCCACACATACCAACGAGAAACCGCACAGTTGTGATCTGTGCCCTAAAAAATTTCACTCGCCTGGAAACTTGAAGAGGCACAAGCTAACGCACACcagcgagaagccgttcaaGTGTGAATTGTGCGATTATAGATGTCAACGTTCGGAATATCTCAAAGGTCACATGTTAAAACATAACGGACAGAAATCGTTCAAGTGTactctttgcgattataaaggcGGATACAGTGCGCATCTGAAGCGGCACATGTTAATGCATACCGGCGAGAAACAATTCAGGTGTAACATCTGCAGTTTTGAATGCAATTGCTCTGCAGGTTTAAGGATACACTTACTAACGCACACCGACGATAGGCCGTTTAAGTGCGGACGTTGTGAATACGTGAGCAAATCggccagatatttaaaaatacacaTGCGAGTGCATTCGGATGAAAAGCCGTATAAGTGCGACCTTTGCAAATACGCGACTAAGTTTCAAGGTAACTTAACAAAACACATGTCAACGCACGACGAACTGCTCAAGTGTAATGTTTGTGAATACACTTGCAGgtGCGCTGGAATTTCTAAACATACAATTCCGGGCGTAAGAACGCTTCAACGTGATGTGCCCGCTTCTGATTTGGAATCTCTTATACATATACGCAAGTGCGTTGATGGTGCGAAGCTGTTCatttgcgatctttgcgattataaatgcaaacGAAGATGGGACATGAAACAGCACGTGAAGGTACATTCTGGCGAGAAGCCCTACGGCTGTAAGATTTGCAGTTACAAGTGCCGAATTTCGGAAGGCTTAAAAACGCATATGTTAAGGCACACCGACGACGGAAGGCAATTCGTTTGCGATCGTTGCGGTGATAAATTCTACACAGAAgcaattttgaagaaacataTGGCCACACATTCCGACGACaaaccgttcggttgtgatctgtGCCCTAAAAGATTTAATGCATCTGGAAATTTGACCAGGCACAAGCTAACGCACACcagcgagaagccgttcgggtGTGAACTGTGCGATTATAGATGCCAACGTCCGGAATATCTGAAAGGTCACATGTTAAAACATAACGATGAAAAATCGTTCGAATGTACcgtttgcgattataaaagcagAGGTGCTTCgcatttgaaacagcacatggTAACGCACACCGGTGAAAAACAATTCAGGTGCAATCTCTGCAGTTTCGAATGCAATCGCCCTGCAAATTTAAGGATACACTTATTAACGCACACCGATGATAGGCCGTTTAAGTGCGGACGTTGCGAGTACGTTTGCAAAGCGGCGAGATATTTAAAATTGCACATGCGAGTGCATTCGGATGAGAAGCCGTTTAAATGGCCTTGGGATTCTAAATTTGTAATTCCGGACTTCCGGGTGCCTGAAAGTGAATCCAAACCAGCTGAGTACGTACCCAAATACGTACTGTCACCTAAAGGCGCGAGGCTGCTCGTttgcgacctttgcgattacaaatgcaaaCGGATCAGTCGCATGAAACAGCACATGAGCATGTCGATACACACCGCTAACGAAAAGAAAGTCGTTTGCGATCGTTGCGCTTATAAATGCCATTCGGAGACGACGCTGAAGCACCACATGTTCACGCATACcaacgagaaaccgttcagttgcgatctgTGCCATCTGAAGTTTAAAACGCCTGGAAATTTGAAGCGGCACCAGCtaacgcacaccggcgagaagccgttcggttgtgactTTTGCGATCACAAGTGTCGGCGTTTGTCCGAACTCAAACTCCACCTGATGACGCACAACAACGAGAAAACGATCGAATGCGCCCTCTGCGATTTTAAATGCGCTAGACTCGGGTATCTGAAGAAGCACATGTtgacgcacaccggcgagaagaaCTACAAATGTCACCTTTGCAGTTACGAGTGCAATCAGTCCGGCAATTTGAGGTTGCACTTGTCGAAGCACACCGATGAGAGGCCCTTTAAGTGCGAACATTGCGAGTACGTGAGCAAGACGGCCAGACATCTACAAGTACACATGCGGGTGCATTCGGAGGACAAGCCGTTTAGgtCCCCCGGGATTTCCAAATTAATAATTCCCTGCCTCCCCGAAAATGGCACTCGCGGTTCCGATTTCAAATCAGCTGAGTATAAACCCAAATACGTACTCTCATCTGACGGCATGAAGTTGTTCATCTGCGACTTCTGCGATCACAAAACCAAACGGGTCGTCAACATGAAAAAGCACGTCAAGACACATTCCGACGAGAAGCCTTACGGCTGCGAGCTTTGCAGTTACAGGTCCCGATTTCCCGAGGGTCTCAAGTATCACATGCTGAAACACACCGGCGCGAAAAAAGTCGTCTGCGACCGCTGCGCTTATAAATGCCACACGGAAGGAATTTTGAGGCTGCACATGGCCAAACATTCGGGCGTGAAGGCGTTCAGTTGCGACCTGTGCCCTCAAAAGTTTACTTTCTCCGGAAGCTTGAGGATTCAcaagttaatacacaccggcgagaagccgttcgctTGTAACGTGTGCGATCACAAGACTCTACGCTTGATGGATCTGAAACGCCACATGGAAACGCATAAAAATGAGAAGCCCATCGAGTGTACTGTTTGCGATTTCAAATGCGCGCGACCTGTgtatttgaaacggcacatgttgacgcataccggcgagaagAACTACAAATGCCACCTTTGCAGCTACGAATGCAATCAGGCCGGGAATCTAAGGTCGCACTTGCTaacgcacaccgacgagaagccgtttaagTGCGAACGTTGTGAGTTTGTGAGCAAAACCGCCAGGTATTTAAAGTTGCACATGCGAGTGCATTCGGATGAGAAGCCGTTCAAGTGTAACCTCTGCGAATACGCGTCTAAGTTTAAAGGTAATTTAACGAAGCATATGACAACGCACGAGAAACCGCTCAAGTGCATCGTCTGTGAATGCACTTGTAAATCGGGAAAGGATTTTAAAAAGCACGTGTCGTCACATGCAAAGGACAATGCGCCTTGA
Protein Sequence
MKEHIKIHSDEKPYICEICSYSCRYAGGLRYHMLIHTVGKQFVCDRCGRRFYTVVLLKAHMATHTNEKPHSCDLCPKKFHSPGNLKRHKLTHTSEKPFKCELCDYRCQRSEYLKGHMLKHNGQKSFKCTLCDYKGGYSAHLKRHMLMHTGEKQFRCNICSFECNCSAGLRIHLLTHTDDRPFKCGRCEYVSKSARYLKIHMRVHSDEKPYKCDLCKYATKFQGNLTKHMSTHDELLKCNVCEYTCRCAGISKHTIPGVRTLQRDVPASDLESLIHIRKCVDGAKLFICDLCDYKCKRRWDMKQHVKVHSGEKPYGCKICSYKCRISEGLKTHMLRHTDDGRQFVCDRCGDKFYTEAILKKHMATHSDDKPFGCDLCPKRFNASGNLTRHKLTHTSEKPFGCELCDYRCQRPEYLKGHMLKHNDEKSFECTVCDYKSRGASHLKQHMVTHTGEKQFRCNLCSFECNRPANLRIHLLTHTDDRPFKCGRCEYVCKAARYLKLHMRVHSDEKPFKWPWDSKFVIPDFRVPESESKPAEYVPKYVLSPKGARLLVCDLCDYKCKRISRMKQHMSMSIHTANEKKVVCDRCAYKCHSETTLKHHMFTHTNEKPFSCDLCHLKFKTPGNLKRHQLTHTGEKPFGCDFCDHKCRRLSELKLHLMTHNNEKTIECALCDFKCARLGYLKKHMLTHTGEKNYKCHLCSYECNQSGNLRLHLSKHTDERPFKCEHCEYVSKTARHLQVHMRVHSEDKPFRSPGISKLIIPCLPENGTRGSDFKSAEYKPKYVLSSDGMKLFICDFCDHKTKRVVNMKKHVKTHSDEKPYGCELCSYRSRFPEGLKYHMLKHTGAKKVVCDRCAYKCHTEGILRLHMAKHSGVKAFSCDLCPQKFTFSGSLRIHKLIHTGEKPFACNVCDHKTLRLMDLKRHMETHKNEKPIECTVCDFKCARPVYLKRHMLTHTGEKNYKCHLCSYECNQAGNLRSHLLTHTDEKPFKCERCEFVSKTARYLKLHMRVHSDEKPFKCNLCEYASKFKGNLTKHMTTHEKPLKCIVCECTCKSGKDFKKHVSSHAKDNAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-