Dhop036210.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
DUT
Assembly
GCA_033060865.1
Location
CM065425.1:69802827-69822849[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.00014 0.015 17.2 1.3 1 23 19 41 19 41 0.99
2 35 0.00034 0.037 16.0 1.8 2 23 48 69 47 69 0.97
3 35 0.0056 0.63 12.1 0.3 2 23 76 97 75 97 0.96
4 35 0.037 4.1 9.6 3.0 1 23 104 126 104 126 0.97
5 35 0.094 10 8.3 1.9 2 23 133 154 132 154 0.97
6 35 0.0035 0.39 12.8 4.7 1 23 160 182 160 182 0.98
7 35 0.0028 0.31 13.1 1.2 1 23 188 210 188 210 0.98
8 35 0.00058 0.064 15.2 0.7 1 23 216 238 216 238 0.98
9 35 0.052 5.8 9.1 0.7 1 23 244 266 244 266 0.98
10 35 6.4e-05 0.0071 18.2 1.7 1 23 272 294 272 294 0.98
11 35 0.0026 0.28 13.2 2.6 1 23 336 358 336 358 0.99
12 35 0.0023 0.25 13.3 5.9 1 23 364 386 364 386 0.98
13 35 0.11 13 8.0 6.3 1 23 392 414 392 414 0.97
14 35 0.014 1.6 10.9 4.7 1 23 420 442 420 442 0.98
15 35 0.003 0.33 13.0 3.7 1 23 448 470 448 470 0.98
16 35 1.7 1.9e+02 4.3 1.1 1 23 475 497 475 497 0.97
17 35 0.00089 0.098 14.6 1.4 2 23 504 525 503 525 0.96
18 35 0.00024 0.027 16.4 1.6 2 23 532 553 531 553 0.98
19 35 0.00025 0.028 16.4 2.6 1 23 580 602 580 602 0.98
20 35 0.014 1.6 10.9 2.7 1 23 608 630 608 630 0.99
21 35 0.066 7.3 8.8 5.4 1 23 636 658 636 658 0.97
22 35 0.006 0.66 12.0 1.9 1 23 664 686 664 686 0.98
23 35 0.00078 0.087 14.8 3.3 1 23 692 714 692 714 0.98
24 35 0.00055 0.061 15.3 1.9 2 23 721 742 720 742 0.98
25 35 0.00056 0.062 15.3 0.6 1 23 753 775 753 775 0.98
26 35 0.00054 0.06 15.3 5.2 1 23 781 803 781 803 0.98
27 35 0.0066 0.73 11.9 4.2 1 23 809 831 809 831 0.97
28 35 0.016 1.7 10.7 4.1 1 23 837 859 837 859 0.97
29 35 0.0018 0.2 13.7 3.9 1 23 865 887 865 887 0.98
30 35 0.00033 0.036 16.0 3.5 1 23 921 943 921 943 0.98
31 35 0.00035 0.039 15.9 3.7 1 23 990 1012 990 1012 0.98
32 35 0.024 2.7 10.1 0.2 1 23 1018 1040 1018 1040 0.97
33 35 0.0007 0.077 15.0 2.7 1 23 1046 1068 1046 1068 0.98
34 35 0.52 57 5.9 2.3 2 23 1073 1094 1072 1094 0.96
35 35 7.2e-05 0.008 18.1 0.6 1 23 1100 1122 1100 1122 0.97

Sequence Information

Coding Sequence
ATGACCGAAATCTCCTTTGGCCCCCCCATGATTACGTTTCCGGAGGAGAAACCGTTCAAATGCACCGTGTGCGACTTCAGGACCGCCTTCCCGCAGAGcttgaaacggcacatgttgACACATTCCGGCTATAAGTCGCTGCAGTGCAACGTGTGCGATTTTCGGTCCGCCTTCGCTCATAATTTGAAGAGGCACATGCTGACGCATGACGGCGATAAATCGCTCGTATGCAACATCTGCGGTTACAAGTCGATTTTTGGGCAGAGCTTGAAGAGGCACATGTCGATGCACTCTACCGGCAACAAGCCATTCCGGTGTAAcatttgcgattttaaatgtaGCCAGTCGACGATTTTAAGCCGGCACATCCTGcaacacaccgacgagaaactaTTGAGATGCACCGTGTGCAATTACGAGTGTCAATTGTCGGGGCGACTGAAAGAACACATGATGACCCACATCGACGAAAAGCGCTTCACGTGTAATTTCTGCGATTACAAGTGCAACAAGGCCCGAAACTTGAAGATACACATTTTcacgcacaccggcgagaagccgttcgagTGCAACGTTTGCAATTTTAAATTCGGCGACAGTTCGATTTTGAAAAGGCACAAACTGACACACTCGGATGAAAAGCCGTTCAAGTGTGGTCAGTGTGATTATAAAAGCAACCGCGCGGGAACTTTACGGCGACACGCGCtgacgcacaccggcgagaggCCGTTCGAGTGCGATTTCTGTGAGTATAAGTCGGGGTTCAGCGACGTTCTAAGCAAGCACATGATGACGCACGGCGACCAGAAACCTTTCGAGTGCGACGTCTGTGATTACAGGTGCATCAGGATTGACACTTTAAAGAGGCACATGTTGACGCACGCCGGCGAGAAACCTTACAAGGGATTTATTACTGAAGATGTCGCGGAGAAATTTGTTGGTAAACGTGACTTTGTAGTGTCAACCGTAGGAAAACAATCGCCACCTCGCAACCACGAAAATCTGTACAAATGTGAACTTTGCAACTACCGATGTAAGAAATTGGGGGCGTTAAAAACTCACGCAATGACtcataccggcgagaaacctTTCGAATGCAGCATATGTGGCTACACGTGCAGATACTCATGCGATTTGAAGAAACACTCTTTGACGCACACCGATGAAAAACCGTTTAAATGCATCAAGTGCAATTACCGGTGCAGAAACTTTGGCAATTTACGTCGACACTTTATGACGCACAGtaacgagaagccgttcagatGCGACACGTGCGATTTTAGGTGCAGAAGTTCGCAAAGTTTAAGAGAACACACTCTGAGGCACACCGACGAAAGACCGTTTAAGTGCAGCAAGTGCGATTACATGAGCAGAGAACGTAGGAATTTACACCGACACTTGTTGATACACGTTAAAAACCCCTTCACCTGCGACGCATGCGATTTTAGATGTGGGACTTCGCAAATTCTAAAAACCCATATCTTGATACACGCCGACGAAAAAGCGCTTAGCTGTACCAAGTGCAACTACATCAGCACGAAACGTGAAAATTTACGTAAGCACCTGATGATACATAACGGCGAGAAGCTAAATAAATGTAAGATTTGTGATTACAAGAGCGCATTTTCTGGCAATTTTAAAAGACACATGCTTACACACAGGAAggGACGTATTACTGAGAAAGACGTCACAGATACTTTTGGTAAACCGTCGCAATCTCGCAACTTTAAGAAGCTGTACGAATGCCATACTTGTAATCGCGAGTTTGCGTCGCGTAGACTTTTAAGAACTCATGCGATGcgacacaccggcgagaaaccgttcaaaTGTACCATGTGCGACTTTGGATGTAGATATCCGCAGGTTTTAAAAACGCACCTCCTGACGCACTCCGATGAGAAACCGTTCAAGTGCAGCGAGTGCGATTACAGGTGCAAGGCGCGCAATAATTTGCATCAACATTCGATGATACATAATGACGAAAAGCCGTTCAGATGTGGCGTGTGCGATTTTAAGTGCAGAACTCCGCGCGTTTTAAGAAATCACGTCCTGACGCACACCGATGAGAAACCGTTTAAATGTAGCAAGTGCGACTACAGCGGCAGGACGCCCGATTGTTTGCGCCAACACCTGACGACACACGACAGCGGGAAACTGAAGAAGTGCAATATTTGTGATTACAAGAGCGTATTTTCTAACAGTTTAAAGAAACATATGCTTACTCATAGAAATGAAACGATACGCATTACACACACGTTTACGTGCGAGAAATGCGGCTACGGAACCAGGTTGCGCCAGAACTTGCTTCGACACTTGATGATACACACTAACGAAAAGCCTTTCGAGTGTAACACGTGCGATTTCAAATGCAGAACTCTACAAAATTTAAAGCGACACGTTAAGACGCACAGCGACGAGAAACGGTTCGCGTGTAAGAAGTGTTACTACACGTGCGAAACGCGTGAAAACTTACGTCTACACTTAACGACGCACAACGAAGAGAAGCCTTTCAGATGTAACGCCTGTGATTTTAGATGTAGGActtcacaaaatttaaaaaatcacagtgCGACGCACACCGATGAAAAGCCGTTCACGTGTGAGAAATGCGGTTACAGTTGCAGGTTGCGTCATGGTTTACTTCGACACTTAATGATACACGATAACGAAAAACCTTTGAGTTGTAACGCATGCGATTTCAAGTGCAGGAGATTACAAAGCTTGAAAGAGCACTGTTTGAGGCACACCGACGAAAAACCGTTTAAGTGTAGCAAATGCGATTACAGGACCAGACAGCGTACGACCTTAAATCGACACTTGAAGGCGCACGTCGAAGAGCCGTTCAGATGTAACGTGTGCGATTTTAGgaGAGATATTATTCAGAATGATTTGGGGAATGTTTCTCGTAAACGTTACGTCGGCGAAGGAAAGCAGCCAGAACGTCACAAGTACGATTTCGAAGAGAGGTTTAGATGCAATATTTGCAACTACAAGTGCAAGAGACCTAGACTGTTGAAAGTTCATGTAATGaaacataccggcgagaaacctTTCGAATGTAACGTATGCGATTTTAAAAGTACGTACCCGGAAGTTTTGAAAAGCCACGTATTGAtacacaccggtgagaagccgtttaAGTGTGGCAAATGCGATTACAAGAGCAGACAACGTTCGTCTTTATATAAACATTTAGTTACCCACGAAAATCCATCCAGCTGTGACGTGTGTAATTTTAGGTGCAGGACTTTGCGTATTTTAAGAAGCCACATGTTGATACACACCGGCGAAAAATCGTTCGAATGTAGCAAATGCGATTACGTCGGCACGAAACGTGATAATTTACGCAAGCACATGGTGATACATAACGGCGAGAAAccgaaaaaatgcaacCAGCAAACCAACAACACGAAAGCAGTTGCACCTGCGAAACGATCGACGAAAGCAGCCGGCTATGATTTACGCAGCGCATACAATTATTCAGTACCGGCGAGAGGCAAAGAAATCATCGACATCGGCATCAAAGTTCAACTTCCCGAAGACTGTTACGGTCGCATAGCTCCAAGGTGTCATCGAGGAAGATTAATAAAAGTCGTACTCTTCAATCATTGCGACGTACCGTACTACGAGATAGTGCGCAGTGATCGCATCGCACAATTAATCTGCCAGCAAATTTACTATCCGGAATTAGAAGAAGTGACGGAACTATCGTCCACAGTTCGAGGTGACAGCGATTTCGGATCAAGCGGCACTCGTTAA
Protein Sequence
MTEISFGPPMITFPEEKPFKCTVCDFRTAFPQSLKRHMLTHSGYKSLQCNVCDFRSAFAHNLKRHMLTHDGDKSLVCNICGYKSIFGQSLKRHMSMHSTGNKPFRCNICDFKCSQSTILSRHILQHTDEKLLRCTVCNYECQLSGRLKEHMMTHIDEKRFTCNFCDYKCNKARNLKIHIFTHTGEKPFECNVCNFKFGDSSILKRHKLTHSDEKPFKCGQCDYKSNRAGTLRRHALTHTGERPFECDFCEYKSGFSDVLSKHMMTHGDQKPFECDVCDYRCIRIDTLKRHMLTHAGEKPYKGFITEDVAEKFVGKRDFVVSTVGKQSPPRNHENLYKCELCNYRCKKLGALKTHAMTHTGEKPFECSICGYTCRYSCDLKKHSLTHTDEKPFKCIKCNYRCRNFGNLRRHFMTHSNEKPFRCDTCDFRCRSSQSLREHTLRHTDERPFKCSKCDYMSRERRNLHRHLLIHVKNPFTCDACDFRCGTSQILKTHILIHADEKALSCTKCNYISTKRENLRKHLMIHNGEKLNKCKICDYKSAFSGNFKRHMLTHRKGRITEKDVTDTFGKPSQSRNFKKLYECHTCNREFASRRLLRTHAMRHTGEKPFKCTMCDFGCRYPQVLKTHLLTHSDEKPFKCSECDYRCKARNNLHQHSMIHNDEKPFRCGVCDFKCRTPRVLRNHVLTHTDEKPFKCSKCDYSGRTPDCLRQHLTTHDSGKLKKCNICDYKSVFSNSLKKHMLTHRNETIRITHTFTCEKCGYGTRLRQNLLRHLMIHTNEKPFECNTCDFKCRTLQNLKRHVKTHSDEKRFACKKCYYTCETRENLRLHLTTHNEEKPFRCNACDFRCRTSQNLKNHSATHTDEKPFTCEKCGYSCRLRHGLLRHLMIHDNEKPLSCNACDFKCRRLQSLKEHCLRHTDEKPFKCSKCDYRTRQRTTLNRHLKAHVEEPFRCNVCDFRRDIIQNDLGNVSRKRYVGEGKQPERHKYDFEERFRCNICNYKCKRPRLLKVHVMKHTGEKPFECNVCDFKSTYPEVLKSHVLIHTGEKPFKCGKCDYKSRQRSSLYKHLVTHENPSSCDVCNFRCRTLRILRSHMLIHTGEKSFECSKCDYVGTKRDNLRKHMVIHNGEKPKKCNQQTNNTKAVAPAKRSTKAAGYDLRSAYNYSVPARGKEIIDIGIKVQLPEDCYGRIAPRCHRGRLIKVVLFNHCDVPYYEIVRSDRIAQLICQQIYYPELEEVTELSSTVRGDSDFGSSGTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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