Dhop036646.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:75681694-75686495[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.4e-06 0.00016 23.4 0.3 3 23 16 37 14 37 0.96
2 21 0.001 0.11 14.4 0.2 1 23 45 67 45 67 0.96
3 21 3.9e-05 0.0043 18.9 0.7 1 23 71 93 71 93 0.99
4 21 5.1e-06 0.00057 21.7 0.6 1 23 99 121 99 121 0.99
5 21 1.4e-05 0.0016 20.3 2.8 1 23 127 149 127 149 0.98
6 21 3.2 3.5e+02 3.5 8.9 1 23 189 211 189 211 0.97
7 21 0.00029 0.032 16.2 2.7 3 23 219 240 217 240 0.96
8 21 0.00018 0.02 16.8 0.1 2 23 249 270 248 270 0.96
9 21 2.6e-06 0.00029 22.6 0.9 1 23 274 296 274 296 0.99
10 21 8.6e-05 0.0096 17.8 1.9 1 23 302 324 302 324 0.99
11 21 0.0011 0.12 14.4 0.3 1 23 330 352 330 352 0.98
12 21 0.00074 0.082 14.9 7.2 1 23 358 380 358 380 0.99
13 21 1.3e-06 0.00014 23.6 0.9 1 23 386 408 386 408 0.98
14 21 0.00058 0.064 15.2 4.2 1 23 448 470 448 470 0.98
15 21 0.014 1.5 10.9 0.1 3 23 490 510 489 510 0.97
16 21 8.6e-06 0.00095 21.0 1.4 1 23 514 536 514 536 0.99
17 21 0.00056 0.062 15.3 1.2 1 23 542 564 542 564 0.98
18 21 7.4e-05 0.0082 18.0 2.5 1 23 570 592 570 592 0.99
19 21 8.9e-05 0.0099 17.8 1.5 1 23 598 620 598 620 0.98
20 21 1.9e-05 0.0021 19.9 0.9 1 23 626 648 626 648 0.97
21 21 0.0014 0.16 14.0 2.6 1 23 654 677 654 677 0.95

Sequence Information

Coding Sequence
ATGAGGCAGCATGTTTTGAGGCACACCAAGAGAATTCCGATCGCATGTAAAATATGCGGAAAAAAATATATCAGCCCTGACACTTTGCAAAGTCACATGAGAAGCAAGCATTCGACGAGAGTTAAAAAACAGTTCGCGTGTGAGATTTGCGGTTTTATAACAAATGAACGCTCGTATCTCAGGAGACACATCGATCAACATGAGAAGCCGTATCAGTGTGAGCGCTGCGGCGATAGATTCGCCTCACGTATCGGTTTGACGAAGCACATGAGGCGACATACCGGTGAAAAACCGTATAAGTGCAACATTTGCGATTTTAAATTCGCTCAGGGCAGTGACCTCATTAAACATACCAGGATACATACCGGCGTGAAGCCTTATCAGTGTCACAATTGCGGTTTTAGAAGTGTGAGAAAGTCTGACCTCATGAAGCATATGGCTAAACATTCCACAGAAAGGCCGTTCAAGTTAACTACGAAAAGCTTTGACGCCAACGAAAGTACACCTCCAGAAGGTGCCCCCAAAAAAGAGCAAGCGAGGAAAGGCCCCTCTTACAATCGGATGTTTAAATGTAATCACTGCGATTACAAGAGTTACAAGGGCCATACCATGAAGCACCATGTTTTAACACATACTAAGAGAATTCCAATCGCATGTAAAATATGCGAACAAAAATGTATCGACTCGAACAGTTTGAGAAAACACATGAGGAAGAAGCATTCGACGGAAGTTAAAGAACAGCTCGTATGTGAGAGTTGCGGTTATACAACAAGTGAACCCTCGTATCTTAGGAGGCACATCAACGAACATGAGAAATCGTATCAGTGCGAGCGCTGCGGCAATATATTCACCTCCCGTTACGGTTTGATGTCGCATATGAGGACACATACCGGGGAGAAACCGTATAAGTGCaacatttgcgattataaatgcgccCAGTCCTATCAGCTCGGGACACATGTGAGGATACATACCGGCGCGAAGCCCTACCAGTGTGACAAATGCGAATTTAGAGCTGCCTTAAAAGGTAACCTCAAGAAGCACATGGCGGTACATTCCACGGAAAAGCCGTTCAAGTGTAACTTGTGCGATTTTAAGACGAAAACCTCCAGACACTTAAAGAATCACAAAAGAACACATACGGGTGAGAAGGCATTCGAATGCAGCGATTGCGCTAAGAGATTCTCTACCTCCACAAACTTGAAGAGGCATGTTTTAATACATGCAGGGGAAAAACCGTTAACTGATGCCATCGAAAGTACACCATCTGAAGAGAACAAAACAGTCCCTCCTACCCCCAAAAGAAAGCTAACGAAGAAGAAACCCTCTTATAATCGGCTATTTAAATGCGAACACTGCGATTACCGAACTAACCGTTCTGATTCTATGAAGAAACATGTCTTAAGGCATACCAAGAGAAAACTACTCGAACGCGGGTTGAAATACGTCGGCTCTAAAACTTTACTATGTGATATTTGtggttttaaaacggatgaacCCGCATATCTCAAGAGGCACATCGATCAACATGAGAAACCCTATCAGTGTGAGCGCTGCGGCAATAGATTCACCTCACGCATCGGTTTGACGACGCACATGAGGCGACATACCGGTGAAAAACCGTACAAGTGCAAAATTTGCGATTACAAAAGTACCCAGAGCTCTCGCCTTTGGGTGCATAATAAGATACACACCGGCGTGAAGCCTTATCAGTGTCACAATTGCGGTTTTAGAACTAGCATGAAAGCTGACCTCATGAAGCACATGATTAAGCATTCTACAGAAAGGCCGTTCAAGTGTGACGTCTGCGGTTTTGAAACGAAAACCTCCGCGCTCTTAAAGAGACACAAGAAATCACACACGGGCGAGAAGGCATTCGAATGCAGTGTCTGCGCTAAGAGATTCACTAGTACCAGAAACTTGAAAAGGCACGTTTTAATACATGCAGGGGAGAAACCATTTGCGTGTGATTTATGTGATTATAGATCTACTCAACGGTCGAATGTAAAAGTGCACatgaaacataaacataaggaGTGCCAGAATACTGCAAATAAAATTGAAGCGACGCAACCATCTTTCTAA
Protein Sequence
MRQHVLRHTKRIPIACKICGKKYISPDTLQSHMRSKHSTRVKKQFACEICGFITNERSYLRRHIDQHEKPYQCERCGDRFASRIGLTKHMRRHTGEKPYKCNICDFKFAQGSDLIKHTRIHTGVKPYQCHNCGFRSVRKSDLMKHMAKHSTERPFKLTTKSFDANESTPPEGAPKKEQARKGPSYNRMFKCNHCDYKSYKGHTMKHHVLTHTKRIPIACKICEQKCIDSNSLRKHMRKKHSTEVKEQLVCESCGYTTSEPSYLRRHINEHEKSYQCERCGNIFTSRYGLMSHMRTHTGEKPYKCNICDYKCAQSYQLGTHVRIHTGAKPYQCDKCEFRAALKGNLKKHMAVHSTEKPFKCNLCDFKTKTSRHLKNHKRTHTGEKAFECSDCAKRFSTSTNLKRHVLIHAGEKPLTDAIESTPSEENKTVPPTPKRKLTKKKPSYNRLFKCEHCDYRTNRSDSMKKHVLRHTKRKLLERGLKYVGSKTLLCDICGFKTDEPAYLKRHIDQHEKPYQCERCGNRFTSRIGLTTHMRRHTGEKPYKCKICDYKSTQSSRLWVHNKIHTGVKPYQCHNCGFRTSMKADLMKHMIKHSTERPFKCDVCGFETKTSALLKRHKKSHTGEKAFECSVCAKRFTSTRNLKRHVLIHAGEKPFACDLCDYRSTQRSNVKVHMKHKHKECQNTANKIEATQPSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-