Dhop036571.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:74415064-74420653[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.00081 0.089 14.8 1.4 1 23 14 36 14 36 0.96
2 41 0.051 5.7 9.1 1.7 2 23 43 64 42 64 0.96
3 41 0.00036 0.04 15.9 0.6 1 23 70 92 70 92 0.98
4 41 0.0002 0.022 16.7 5.4 1 23 98 120 98 120 0.98
5 41 0.018 2 10.5 5.2 1 23 126 148 126 148 0.98
6 41 0.12 13 8.0 5.9 1 23 154 176 154 176 0.96
7 41 0.00014 0.015 17.2 3.5 1 23 182 204 182 204 0.98
8 41 0.00015 0.016 17.1 0.6 1 23 210 232 210 232 0.97
9 41 0.021 2.3 10.3 1.5 2 23 239 260 238 260 0.96
10 41 0.0017 0.19 13.7 1.5 1 23 266 288 266 288 0.98
11 41 7.7 8.5e+02 2.3 3.5 2 23 295 316 294 316 0.93
12 41 0.15 16 7.6 4.4 1 23 322 344 322 344 0.96
13 41 0.0037 0.41 12.7 0.7 1 23 370 392 370 392 0.98
14 41 0.00086 0.095 14.7 2.3 1 23 398 420 398 420 0.97
15 41 0.00066 0.073 15.0 1.2 3 23 428 448 426 448 0.98
16 41 0.17 18 7.5 7.2 2 23 455 476 454 476 0.97
17 41 0.0023 0.25 13.3 4.6 1 23 482 504 482 504 0.99
18 41 0.015 1.7 10.7 4.3 1 23 510 532 510 532 0.98
19 41 1.2 1.3e+02 4.8 1.3 1 23 538 560 538 560 0.96
20 41 0.13 14 7.9 2.2 2 23 595 616 595 616 0.96
21 41 0.012 1.4 11.0 3.2 1 23 622 644 622 644 0.98
22 41 0.0009 0.1 14.6 3.2 1 23 650 672 650 672 0.98
23 41 0.12 13 7.9 6.7 2 23 679 700 678 700 0.95
24 41 0.00091 0.1 14.6 0.4 1 23 821 843 821 843 0.97
25 41 0.023 2.5 10.2 6.7 1 23 849 871 849 871 0.97
26 41 0.00092 0.1 14.6 5.6 1 23 877 899 877 899 0.97
27 41 0.0034 0.37 12.8 1.6 1 23 929 951 929 951 0.98
28 41 0.00043 0.048 15.6 1.4 1 23 957 979 957 979 0.97
29 41 0.00061 0.067 15.2 4.6 1 23 985 1007 985 1007 0.98
30 41 2.1e-05 0.0023 19.8 1.8 1 23 1037 1059 1037 1059 0.98
31 41 0.021 2.4 10.3 3.5 1 23 1065 1087 1065 1087 0.97
32 41 0.0013 0.15 14.1 4.0 1 23 1093 1115 1093 1115 0.97
33 41 3.5e-05 0.0038 19.1 1.2 1 23 1145 1167 1145 1167 0.98
34 41 0.015 1.6 10.8 3.3 1 23 1173 1195 1173 1195 0.97
35 41 0.00084 0.092 14.7 3.3 1 23 1201 1223 1201 1223 0.97
36 41 0.0002 0.022 16.7 3.9 1 23 1253 1275 1253 1275 0.98
37 41 0.06 6.7 8.9 2.7 3 23 1283 1303 1281 1303 0.97
38 41 0.00066 0.073 15.1 7.3 1 23 1309 1331 1309 1331 0.97
39 41 0.0053 0.59 12.2 0.3 1 23 1337 1359 1337 1359 0.97
40 41 0.0067 0.75 11.9 1.5 2 23 1366 1387 1365 1387 0.96
41 41 0.039 4.3 9.5 2.2 2 23 1394 1415 1393 1415 0.96

Sequence Information

Coding Sequence
ATGCAGAAGCATCTTCTGCTACATACGGGCGAAAAGCCGTTCAGGTGTGCTTATTGCGATTACACGTGTCGACAAGCCGGAGCTCTGAAACAGCACGTGTttatacacaccggcgagaaaccgctTTCCTGCGAACATTGCAGCTACAAGACCCGACAAGTCGGAAATTTGAAACTGCACGCGTtgaaacacaccggcgagaagtcGTTCCGTTGTAATTTGTGCGACTACAAGAGCCGAGAAGCCGGAACTCTGAAGCGGCATATGTTAATTCACACGGATGAGAAGCCGTTCACCTGTGATtattgcgattacaaatgccgacgtGCTGGGTGTTTGAAGAGGCACATGTTGatacacaccggcgaaaagccgttcagctgtgaCCTTTGCAATTTCAAGTGCCGATATTCGGTAATGTTAAAAAAGCACATGACGAGGCATGCCGATGAGAAACTATTCTGCTGTGAGATTTGCAATTACAAGTGCGGGCACGCCAAAAGTTTGAAGCTGCACATGTCGGCACACGACGACGAGAAGCAGTTCCGCTGTGAATATTGCGGTTACATGACTCGACATACCGTAAATTTTAAACggcacatgttaatacacaccggcgagaaaccgtacATCTGTAGTCTTTGCGAATACAAGTTCCGAGAACCGGGAAAGTTGAAACGTCACATGTTAttgcacaccgacgagaagccgttaagctgtgatctttgcgattttaaatgtcGGCAGGTCGGCAGTTTGAAATGGCACTTGTTGAGGCACGTCGACGCGATACCGTTTAATTGTGGCctgtgcgattataaatgtcggcaAACTGCAGATTTGAAAGAGCATATACTAACGCACCCCGGCGAGAAGCTGCTTTGTTGTGGTCTCTGCGATTACAAGTGTCAAGAAGTCACAAAGTTAAAATGGCATATGGTGAAACATGCCGGCGAGATGTcgttcagttgtgatttttGTGATTACAGGTGCAAGGAACCTAGGACATTGAAACAACACAATTTGAAACATATTGGTGAGGTTGCGAAATTGAAGGTTGAAAATAAATGTGAAAAGTCCCGACCTAAGAGTCACGCGAAGAAGACATTCCAGTGCCGAATATGcgagtctaaatttaaaagcCAAGGACGTTTGCGCGAACACGTTATGATACATTCGGGTGAGACACCGTTCTACTGTAACTTTTGCCACATCAAATTTAGACAAGTCGACGCTTTGAAAAAGCACGTGTTGAttcacaccgacgagaaaccgttcggcTGTAATCTTTGCGACTACAAATCCCGCGTATCGCAAAACTTGAAACGTCACATGCTaacgcacaccgacgagaagccgttacGCTGCGGTCATTGCGATTACAGGTGCAAAGAAAACAGACACATGAAGCTCCACATGTTGatgcacaccgacgagaagccgttccgCTGTGAGCGTTGCGATTACAAGTGTGGGCAAGTCGGACATTTGAGGCGGCACATGTTAActcacaccggcgagaaaccgttcgtctgtaatctctgcgattataaatgccgagaaTCGGCAACGTTGAAGCATCACGtgttaaaacacaccgacgagaacTCGTTCAGCTGTggcctttgcgattacaagtgtgGAGAAGCCAAACGCATGAAACAACACATGTTAGCGCACATCGAGGAGAAGCCATTCTGCTGTGAACATTGCGATTATAAAAACCTAAAATTCGGACAGttgaaacggcacatgttaaCCCACACGGGCAAGAAACAGCGTTCTTGCGATTtgtgcgattataaatgctcGGCGCCCTCGAAGATGAAAAGGCACAAGTTGATACATACCAAGGAGAAGCCATTTAGTTGTAagctttgcgattacaaatcgCGATATGCAATACATTTGAGTCGGCACCTGTTGAAACACACCGAGGAGAAACCGTTTAGTTGTAACCTCTGTGATTACAGATGCCGAGAAAAATGGCAATTGAAAGTGCACATGTTGAAACATCCTGTTGGAAAGCCGATCAGCTGTTgtttttgcgattacaaatgcaaaAGTCGCAAAGACCTTCAGTCACACATGTCAAATCATATTAACATCAAGAGTGCCACTGTTaatCCAAATAGGACCTCCACCTATGATTCACATTCCATTCCCAAACACATTCCGGACGTAAAGCCATTCACTCGTGATTTTCGCAATTACAAGTGTCGAAAGGCCGGGCGCTTGAAGCAATATGTGGTGACACACGCCGACGAGAAGCTGTACAGTTTGCGTCTACAGATGCCAAAGAACGGGAGATTTGAAAAGTCACTTGTTAATAcataccgacgagaaaccgttctgCGATTCCAAATGATGCAAGCCACCATAACGACCGAACCCCAAATATTTGAAGCTCGAAGAGGATCTACGGACAAGCACATTCTGACACATTCGGACGAAAAACCATTCGCCTGTGAATTGTGCGGTCACAGATTCCGCATTGCCGGGGTCTTGAAGCGGCATATCTtaacacacaccgacgagaagccattcagttgtgaccattgcgattacaaatgccatCGAGCTGGAGacttaaaaaaacacaagttaataCACACTGACTTCAAGCCGTTCTGTTGTAAGTACTGCGATTATAAGTGTCGACAAGTCGGGAATTTAAAGCGTCACATTTTGATACACACCGATAAGGTTCCGTTTAGTCGCCGTCTTAAATCCAGGCGAGCCGGAAATTGCAAACAAGTTCTGAGACATTCGGACGAAAAACCATTCATATGTGAAATCTGCAGTTACAAGTGCCGAAAGGCCGGGGTCTTGAAACAACACATGTtaacacacaccgacgagaagccattcagttgcgACCTTTGTGGTTACAAGTGCAATCGAGCTGGAGACTTAAAAACTCACAGGTTAATACACACAGACTTCAAGCCGTTCTGTTGTGAATACTGTGGTTATAAGAGTCGACACATTGGGAATTTGAAGCGTCACATTTTGACACACACCGAGAAGGATCCGTTTAGTCGCCGTCTTAAATCCAGGCGAGCCGGAAATGGCAAACACGTTCTGAAACATTCGGACGAAAAACCATTCGTCTGTGAATTCTGCGGTTACAAGTGCCGAACGGCCGGGAACTTGAAGCTGCACATGTtaacacacaccgacgagaagcggTTCAGTTGCGAcctctgcgattacaaatgccatCGAGCTGCGGACTTAAAAAATCAcaagttaatacacaccgacTTCAAGCCGTTCTGTTGTGAATACTGCGGTTATAAGAGTCGACACATTGGGAATTTAAAGCGTCACATCTCGATACACACCGAGAAGGATCCGTTTAGTTGCCGTCTTAAATCCAGACGAGCCGGAGATGGCAAACACATTCTGAAACATTCGGACGAAAAACCATTCATCTGTGAACTCTGCGGTTACAAGTGCCGAAAGGCCGGGAACTTGAAGGTGCACATGTtaacacacaccgacgagaagcggttcagttgcgacctttgcgattacaaatgccatCGAGCTGCGGACTTAAAAAGTCACAGATTAATACATACCGACGTCAAACCATTCTGTTGTGAATACTGCGGTTATAAGAGTCGACACATTGGGAATTTAAATCGTCACATTTTGATACACACCGAGAAGGATCCGTTTAGTTTCCATCTTAAATCCAGACGAGCCGAAAATGGCAAACACATTCTGAAACATTCGGACGAAAAGCCATTCACCTGTGAATCCTGCGGTTACAAGTGCCGAAAGGCCGGGAACTTTAAGCGGCACATGTtaacacacaccgacgagaagcggTTCGGTTGCGAcctctgcgattacaaatgccatCGAGCTGCGGACTTAAAAAATCACAggttaatacacaccgacgtCAAACCATTCTGTTGTGAATactgcgattataagtgccgacaCAGCGGAAATTTAAGGCGTCACATtttaatacacaccggcgatAAACCGTTCGCTTGCGATATGTGCGATTATAAGGGCCGAGAGCTATCGAAATTAAAACAGCACATGTTagtacacaccgacgagaagccgttgagttgtgatctttgcgattataaatgccgaaacGTATCGAGGTTGAAAATACACATGTTGATACATACCGATGAAAAACCGCTCAGTTGTGATTTATGCGATTACAAGTGCAAGGAATTGGTATCACTAAAACGACACGTGTCGAAGCATATGAATAAGAGTGCAAATAAGCAGTCTCGTCATTCAAATGCATTAAACATCGACGAGAAGCTTTTCGAAAAACCAGAAAAGCTGCAATGA
Protein Sequence
MQKHLLLHTGEKPFRCAYCDYTCRQAGALKQHVFIHTGEKPLSCEHCSYKTRQVGNLKLHALKHTGEKSFRCNLCDYKSREAGTLKRHMLIHTDEKPFTCDYCDYKCRRAGCLKRHMLIHTGEKPFSCDLCNFKCRYSVMLKKHMTRHADEKLFCCEICNYKCGHAKSLKLHMSAHDDEKQFRCEYCGYMTRHTVNFKRHMLIHTGEKPYICSLCEYKFREPGKLKRHMLLHTDEKPLSCDLCDFKCRQVGSLKWHLLRHVDAIPFNCGLCDYKCRQTADLKEHILTHPGEKLLCCGLCDYKCQEVTKLKWHMVKHAGEMSFSCDFCDYRCKEPRTLKQHNLKHIGEVAKLKVENKCEKSRPKSHAKKTFQCRICESKFKSQGRLREHVMIHSGETPFYCNFCHIKFRQVDALKKHVLIHTDEKPFGCNLCDYKSRVSQNLKRHMLTHTDEKPLRCGHCDYRCKENRHMKLHMLMHTDEKPFRCERCDYKCGQVGHLRRHMLTHTGEKPFVCNLCDYKCRESATLKHHVLKHTDENSFSCGLCDYKCGEAKRMKQHMLAHIEEKPFCCEHCDYKNLKFGQLKRHMLTHTGKKQRSCDLCDYKCSAPSKMKRHKLIHTKEKPFSCKLCDYKSRYAIHLSRHLLKHTEEKPFSCNLCDYRCREKWQLKVHMLKHPVGKPISCCFCDYKCKSRKDLQSHMSNHINIKSATVNPNRTSTYDSHSIPKHIPDVKPFTRDFRNYKCRKAGRLKQYVVTHADEKLYSLRLQMPKNGRFEKSLVNTYRRETVLRFQMMQATITTEPQIFEARRGSTDKHILTHSDEKPFACELCGHRFRIAGVLKRHILTHTDEKPFSCDHCDYKCHRAGDLKKHKLIHTDFKPFCCKYCDYKCRQVGNLKRHILIHTDKVPFSRRLKSRRAGNCKQVLRHSDEKPFICEICSYKCRKAGVLKQHMLTHTDEKPFSCDLCGYKCNRAGDLKTHRLIHTDFKPFCCEYCGYKSRHIGNLKRHILTHTEKDPFSRRLKSRRAGNGKHVLKHSDEKPFVCEFCGYKCRTAGNLKLHMLTHTDEKRFSCDLCDYKCHRAADLKNHKLIHTDFKPFCCEYCGYKSRHIGNLKRHISIHTEKDPFSCRLKSRRAGDGKHILKHSDEKPFICELCGYKCRKAGNLKVHMLTHTDEKRFSCDLCDYKCHRAADLKSHRLIHTDVKPFCCEYCGYKSRHIGNLNRHILIHTEKDPFSFHLKSRRAENGKHILKHSDEKPFTCESCGYKCRKAGNFKRHMLTHTDEKRFGCDLCDYKCHRAADLKNHRLIHTDVKPFCCEYCDYKCRHSGNLRRHILIHTGDKPFACDMCDYKGRELSKLKQHMLVHTDEKPLSCDLCDYKCRNVSRLKIHMLIHTDEKPLSCDLCDYKCKELVSLKRHVSKHMNKSANKQSRHSNALNIDEKLFEKPEKLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-