Dhop036568.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:74399180-74409990[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.0092 1 11.4 2.5 1 23 10 32 10 32 0.98
2 44 0.0053 0.59 12.2 4.0 1 23 38 60 38 60 0.97
3 44 0.0068 0.76 11.8 5.0 2 23 67 88 66 88 0.97
4 44 0.0047 0.52 12.3 0.3 1 20 94 113 94 115 0.94
5 44 0.052 5.8 9.1 6.0 1 23 150 172 150 172 0.97
6 44 0.24 27 7.0 2.3 1 23 205 227 205 227 0.98
7 44 0.00017 0.019 16.9 2.5 2 23 239 260 238 260 0.97
8 44 0.0015 0.17 13.9 0.9 1 23 266 288 266 288 0.98
9 44 6.1 6.7e+02 2.6 1.5 1 10 294 303 294 303 0.96
10 44 2e-06 0.00022 23.0 1.8 1 23 312 334 312 334 0.98
11 44 0.00018 0.02 16.8 1.7 1 23 340 362 340 362 0.97
12 44 0.0019 0.21 13.6 4.5 1 23 368 390 368 390 0.98
13 44 0.00057 0.064 15.2 0.6 1 23 396 420 396 420 0.97
14 44 0.00056 0.062 15.3 4.4 1 23 426 448 426 448 0.99
15 44 5.2 5.7e+02 2.8 2.7 2 23 455 473 454 473 0.86
16 44 0.0012 0.13 14.2 1.0 1 19 479 497 479 498 0.97
17 44 1.3 1.4e+02 4.7 4.8 1 23 508 530 508 531 0.95
18 44 3.1e-05 0.0034 19.2 0.7 1 23 540 562 540 562 0.97
19 44 0.063 7 8.8 0.9 1 23 597 619 597 619 0.98
20 44 0.016 1.7 10.7 2.7 1 23 625 647 625 647 0.98
21 44 0.0046 0.51 12.4 3.8 2 23 663 684 662 684 0.97
22 44 0.0015 0.17 13.9 0.8 1 23 690 712 690 712 0.98
23 44 0.0027 0.3 13.1 1.3 1 23 718 740 718 740 0.99
24 44 0.0053 0.59 12.2 1.6 1 23 746 768 746 768 0.98
25 44 8.1e-05 0.009 17.9 2.4 1 23 774 796 774 796 0.98
26 44 0.026 2.9 10.0 1.4 1 23 813 835 813 835 0.98
27 44 0.27 29 6.8 4.5 1 23 841 863 841 863 0.98
28 44 9.7e-05 0.011 17.7 0.5 2 23 879 900 878 900 0.97
29 44 0.00016 0.017 17.0 1.4 1 23 906 928 906 928 0.99
30 44 3.5e-05 0.0038 19.1 2.6 1 23 934 956 934 956 0.99
31 44 0.03 3.3 9.8 7.0 1 23 962 984 962 984 0.98
32 44 0.00063 0.07 15.1 1.6 3 23 992 1012 991 1012 0.99
33 44 0.00031 0.034 16.1 2.5 1 23 1018 1040 1018 1040 0.98
34 44 8.9e-06 0.00099 20.9 1.1 1 21 1055 1075 1055 1076 0.95
35 44 0.00031 0.034 16.1 4.3 2 23 1084 1105 1083 1105 0.97
36 44 0.048 5.4 9.2 0.2 1 17 1164 1180 1164 1181 0.95
37 44 0.023 2.5 10.2 1.6 1 23 1191 1213 1191 1213 0.98
38 44 0.46 51 6.1 4.2 1 23 1219 1241 1219 1241 0.98
39 44 0.00011 0.012 17.5 0.6 2 23 1257 1278 1256 1278 0.97
40 44 0.00041 0.046 15.7 0.9 1 23 1284 1306 1284 1306 0.98
41 44 0.0015 0.16 13.9 3.8 1 23 1312 1334 1312 1334 0.99
42 44 0.00076 0.084 14.8 0.9 1 23 1340 1362 1340 1362 0.98
43 44 0.00013 0.014 17.3 2.5 1 23 1368 1390 1368 1390 0.98
44 44 0.0022 0.24 13.4 5.4 1 23 1396 1418 1396 1418 0.98

Sequence Information

Coding Sequence
ATGACAAGTTCTTGCACAAATTCCAAGTTCCGCTGCGATCGTTGCGCTTACGCGTGTACGAACGCGACGAGTTTAAGAAGACACGTCTAcacgcacaccggcgagaagccattcGAATGCGATCTTTGCGACTACAAGTGCACCCGCATGTACCTGCTGAAAAGGCACAGGTACATTCACGCCAGCGTGAAACCTCTGAAGTGCCATCTGTGCGATTATAGGTGCATCACGAGGTACAGTTTGAACACGCACGTGCAGTCTCACCCCGAGTTCGAGCCGTTCCAGTGCGAGTCCTGCGGCGAAAAATTCGCCAACGCCGAATTCTTGCAGTCGCACAAGTCGAAGTACACCGGCGAGTTTCCCTTCAAGTGCAACCTTTACGAACACCAATCTGGCAGCAACGTCAAAAAGCTTAACGCTTTCGAGAAGAAAACTGTCGGGAAGAAGTTCAAGTGTCACATCTGTTGTCAACTTTTTAGTCATTCGGTAAATTTAAAACGGCACGTGGCGATACATACCGTTTGTACACCAAACAAGAACGCCCTCTCAAATGCGAACTTTGCGATTGCACGAGCACCGTTCCGCGCGTACACACACACCGAGGATAAACCCTTTCAGTGTGGTGTTTGTTCCTATCAGTGCTTTCGAGCTAAGGAATTCAAGGGTCACGTATTGACACACGCAGGCGAAAACGCCTTCCGCTACAAACCGGTCCAATGCGACCGCTGCGGTCGGCGACTTACAAGCTCCGACCATTTAAGATCGCACATGTTTACgcacacgggcgagaagccCTACAAATGCGACCTCTGCGATTACAGGAGCAGGCAATCGGGGACGTTGAGCACGCATCGGCTGGTGCACACGGGCGAGAAATCGTTCAAGTGTGACCTCTGTGATTATAGTTTCCTACAGGGTGGCTCCAAAAAGCGCTTCAAGTGCGGACACTGCGACTACGAATTTTCCAGACTGGGAAATTTAAAGAGGCACATCTCGATACACGCCAGCGGAAAATCCTTCGACTGCGACGAATGCGGTTACAAGTGCGTCTACGCGGTGCAATTCAAAGAGCACATGCGCACTCACGCCAACGTCAAACCCCATAAGTGCAAGCTATGTGAAAACAGATACGCCAACAAGTACAGTTTGAGGAACCACATGTACACCCACACCGGCTTATTGCCTTTCCGTTGTGATCGCGATCAGTGCGACAAAAAATTCATGAAAGCTTCAGATTTAAGGTCGCACGTGTTGATACATACCGGTGAGAAACCGTACAAGTGCGATGATTGCAATTACAAGTGCAAGACAGTGGGGAGTCTAAACAGACATCGACAGCGACATACCGGCGAGAGGCTGTCGAAGTGCAAGATCTGCGGAATGATGTCCTCGTGCTTGAGGATACACATGTTGAGACACACCGACGAAAAACCGTTCAAGTGCGACCTGTGCGACTTACAATTCCGTCAGAGCTTCGACTTGAAGAAGCACGTTTGGGCGACGCATTCCGGGGAACAATTGTTCAAGTGTAAGCTCTGTACTTACCAATGTAACAAGGCCCTCACCTTGTACTGGCACATCGCGAGGCATCATGAGAGGCGAAACGTCGAAAAGCCGTTCAAATGTGACGTGTGCGATCACACGTTTGCGACTGCGGCGTATCTGAAGAGGCACGCGTCGATACACACCGCCGAGAAACGTTTCGCCTGTGAGCTATGCGATTACGCGAGTTATCGCCATGATCGTTTGAGTGTTTATGTCAAACAAGAACCCGGCACGCTTCGCTCTTTCAAATGCGAACTTTGCGATTACACGAGCGCCATTCCGCGAACTTTCATAAAACACACGTACACACACACCGAGGAGAAACCGTTTCAGTGTGACGTCTGTTCCTACCAGTGCTTTCAAGCCAAGGAATTCAAGGCTCACCTGTTAACACACGGGGGCGAAAAGCTCCAAGAGAAACCCTCCCGTTACAAACCGGTCCAATGCGACCGCTGCGGTTGTAGACTCACGAGCGCCGAGCACTTAAAATCGCACATGTTTACgcacacgggcgagaagccTTACAAGTGCGACCTCTGCGATTACAGGAGCAGGCAGTTGGGGACGTTGAACACGCATCGGCTGGTGCACACGGGGAAGAAACGGTTCAAGTGCGACCTCTGCGATTACAGGAGCGCCTTGAGGAGTACCATGAGGACGCACATGATGACGCATTCTGGCGCGAAGCCGTTCGAATGCAGTCTGTGTGAATATAGAGGATGCAGCGCGGGGAAGCTGAAGCTGCACATGCGTTCACACACCGGCGAGAGACCGTACGCTTGCAGCACTTGCCTTCGCAAGTTTAAGAGTTCCAAGAATTTGAAGAGGCACGTGCTcacgcacaccggcgagaaaccgtttaaTGTGTGTATCAAACGAGGACCTCGCTCTTTCAAATGCGAACTTTGCGATTACACGAGCACGATTTCGCAAAATTTTTTAAGACATGCGTACACACACACCGAGGAGAAACCGTTCCGATGTGAAACTTGTTCCTACCAGTGCTTCCAAGCTAAGGAATTCAAGACCCACGTGTTAACACATGGGGGCGAGAGACCCCAAGAGAAACCCTCCCGTTACAAGCCGGTCCAATGCGACCGCTGCGGCCGGCGACTTACGAACGCCGTTCACCTGAAAGCGCACATGCTTATacacacgggcgagaagccTTACAAATGCGACCTCTGCGATTACAGGAGCAGGCAATCGGGGACGTTGAACACGCATCGGCGGGTGCACAcgggcgagaaaccgttcaagTGTGACCTCTGTGATTATAGGTGCGCGTCGAAAGGTTCCCTGAGGAAGCACATTATGACACATTCTGGCGTGAAACCACACAAGTGCCATCTGTGTAAGTATGAGGGAAGAACAGCGAGGCATCTTAAGATGCATATACGTTCACACACCGACGAGAGACCGCACGGTTGCAGCACTTGCTTTCGGAAGTTTAAGAGCCCCAAGGACTTGAAGAGGCATGCGCTcacgcacaccggcgagaaaccgtttaAATGCGACCTCTGTGATTACCGTTCTACGCAAAGAAGTAATGTAAAGACGCACATGTCTAAACATAAATTTCAtttccaTATCCAGCAGGGTGGCCCCAAAAAACGCTTCAAATGCGGACATTGCGATCACGCCTTTTCCAGACTTGGCAATTTAAAAAGGCACATCCTAATGCAAGCCGACGGAAAGATCCTCAAGTGCAAAGAATGCGACTATAGGTGCGTCTatcgaaaacaattgaaagagcACATGCGCAGCCACGTCACCTTGAAACCTCTGAAATGCAAGTTGTGTGTCAACAGGTGTAAGTCGTTGGGAGCTCTGAACAGTCGTCGACGGCGATACACCGGTGAGAAGCTGGCGCAATGCAAAATCTGCGGAATGCGGTCCTCGTGCTTGAAGAAGTACATGTCGaggcacaccgacgagaaaccgttcaagTGCGACCTGTGCGATTTACGATTTCGCCCGTTGTCCAACTTGAAAATTGTGTGTGTCAAACGAGGATCTCGCTCTTTCAAATGCGAACTTTGCGATTACACGAGCACGATTTCGCGAAATTTTTTAAGACATGCGTACACACACACCGAGGAGAAACCGTTTCGATGTGATACTTGTTCCTACCAGTGCTTCCAGGCTAAGGAATTCAGGGCTCACGTGTTTACACACGGAGGCGAAAAGCTCCAAGAGAAACCCTCCCGTTACAAGCCGGTCCAATGCGACCGCTGCGGGCGGCGACTTAAGAACGCCGTTCACCTGAAAGCGCACATGCTTATacacacgggcgagaagccCTACAAATGCGACCTCTGCGATTACAGAAGCAGGCAGTCGGGATCGTTGAACACGCATCGGCTGGTACACACGGGCGAGAAACGGTTCAAGTGTGACCTCTGCGATTATAGGTGCGCCTTAAAAGCTTCCCTGAGGCACCACATAATGACGCATTCTGACGTGAAACCGCACAGGTGCAACCTATGCGATTATAGAGGGAGCGCGGCGGGGAACCTTAGATCTCACATGCGTTCACATACCGGCGAGAGACCGTACAGTTGCAACACTTGCTTTTGGAAGTTTAAGAGCCCCAAGGATTTGAAGAGGCATGTATTCACgcataccggcgagaaaccgttcaaaTGTGACTACTGCAGTTATCGTTCCACCCACAGCAGTAACGTAAAGACGCACATGtcgaaacataaattttaa
Protein Sequence
MTSSCTNSKFRCDRCAYACTNATSLRRHVYTHTGEKPFECDLCDYKCTRMYLLKRHRYIHASVKPLKCHLCDYRCITRYSLNTHVQSHPEFEPFQCESCGEKFANAEFLQSHKSKYTGEFPFKCNLYEHQSGSNVKKLNAFEKKTVGKKFKCHICCQLFSHSVNLKRHVAIHTVCTPNKNALSNANFAIARAPFRAYTHTEDKPFQCGVCSYQCFRAKEFKGHVLTHAGENAFRYKPVQCDRCGRRLTSSDHLRSHMFTHTGEKPYKCDLCDYRSRQSGTLSTHRLVHTGEKSFKCDLCDYSFLQGGSKKRFKCGHCDYEFSRLGNLKRHISIHASGKSFDCDECGYKCVYAVQFKEHMRTHANVKPHKCKLCENRYANKYSLRNHMYTHTGLLPFRCDRDQCDKKFMKASDLRSHVLIHTGEKPYKCDDCNYKCKTVGSLNRHRQRHTGERLSKCKICGMMSSCLRIHMLRHTDEKPFKCDLCDLQFRQSFDLKKHVWATHSGEQLFKCKLCTYQCNKALTLYWHIARHHERRNVEKPFKCDVCDHTFATAAYLKRHASIHTAEKRFACELCDYASYRHDRLSVYVKQEPGTLRSFKCELCDYTSAIPRTFIKHTYTHTEEKPFQCDVCSYQCFQAKEFKAHLLTHGGEKLQEKPSRYKPVQCDRCGCRLTSAEHLKSHMFTHTGEKPYKCDLCDYRSRQLGTLNTHRLVHTGKKRFKCDLCDYRSALRSTMRTHMMTHSGAKPFECSLCEYRGCSAGKLKLHMRSHTGERPYACSTCLRKFKSSKNLKRHVLTHTGEKPFNVCIKRGPRSFKCELCDYTSTISQNFLRHAYTHTEEKPFRCETCSYQCFQAKEFKTHVLTHGGERPQEKPSRYKPVQCDRCGRRLTNAVHLKAHMLIHTGEKPYKCDLCDYRSRQSGTLNTHRRVHTGEKPFKCDLCDYRCASKGSLRKHIMTHSGVKPHKCHLCKYEGRTARHLKMHIRSHTDERPHGCSTCFRKFKSPKDLKRHALTHTGEKPFKCDLCDYRSTQRSNVKTHMSKHKFHFHIQQGGPKKRFKCGHCDHAFSRLGNLKRHILMQADGKILKCKECDYRCVYRKQLKEHMRSHVTLKPLKCKLCVNRCKSLGALNSRRRRYTGEKLAQCKICGMRSSCLKKYMSRHTDEKPFKCDLCDLRFRPLSNLKIVCVKRGSRSFKCELCDYTSTISRNFLRHAYTHTEEKPFRCDTCSYQCFQAKEFRAHVFTHGGEKLQEKPSRYKPVQCDRCGRRLKNAVHLKAHMLIHTGEKPYKCDLCDYRSRQSGSLNTHRLVHTGEKRFKCDLCDYRCALKASLRHHIMTHSDVKPHRCNLCDYRGSAAGNLRSHMRSHTGERPYSCNTCFWKFKSPKDLKRHVFTHTGEKPFKCDYCSYRSTHSSNVKTHMSKHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-