Dhop036415.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:72568147-72602455[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 42 0.00028 0.031 16.2 0.2 2 23 61 82 60 82 0.97
2 42 0.0002 0.023 16.6 2.1 3 23 90 110 88 110 0.97
3 42 0.0002 0.022 16.7 0.6 1 23 116 138 116 138 0.98
4 42 0.00045 0.05 15.6 4.9 1 23 144 166 144 166 0.98
5 42 0.22 25 7.1 9.0 1 23 172 194 172 194 0.98
6 42 0.00062 0.069 15.1 3.3 2 23 201 222 200 222 0.96
7 42 0.00036 0.04 15.9 2.0 2 23 229 250 229 250 0.97
8 42 0.0022 0.24 13.4 4.1 1 23 256 278 256 278 0.97
9 42 0.0021 0.23 13.4 2.2 2 23 285 306 284 306 0.96
10 42 0.0044 0.49 12.4 2.7 2 23 313 334 312 334 0.96
11 42 0.018 2 10.5 3.0 1 20 340 359 340 361 0.95
12 42 0.095 10 8.3 0.9 2 23 392 413 391 413 0.96
13 42 0.00038 0.042 15.8 1.7 1 23 421 443 421 443 0.98
14 42 0.0047 0.52 12.3 3.0 2 23 450 472 449 472 0.95
15 42 0.00044 0.049 15.6 0.8 1 23 477 499 477 499 0.97
16 42 0.00048 0.053 15.5 3.6 3 23 507 527 505 527 0.98
17 42 0.00017 0.018 16.9 3.1 2 23 534 555 533 555 0.97
18 42 0.00065 0.073 15.1 3.2 2 23 562 583 561 583 0.96
19 42 0.12 14 7.9 2.5 1 23 609 632 609 632 0.95
20 42 0.0037 0.41 12.7 0.1 2 23 639 660 638 660 0.97
21 42 0.23 25 7.1 4.0 3 23 668 688 666 688 0.91
22 42 0.027 3 10.0 1.9 1 23 694 716 694 716 0.97
23 42 0.015 1.7 10.7 0.7 3 23 755 776 754 776 0.96
24 42 3.3 3.6e+02 3.4 0.9 1 20 795 814 795 817 0.91
25 42 0.12 13 8.0 0.8 1 23 821 844 821 844 0.94
26 42 0.015 1.7 10.7 0.2 1 23 850 873 850 873 0.98
27 42 0.0077 0.85 11.7 0.3 1 23 879 901 879 901 0.94
28 42 0.0039 0.43 12.6 0.7 1 23 907 930 907 930 0.97
29 42 9.9e-05 0.011 17.6 6.8 2 23 942 963 941 963 0.98
30 42 1.7e-05 0.0019 20.0 0.7 3 23 976 996 974 996 0.96
31 42 1.2e-05 0.0013 20.5 1.9 1 23 1002 1024 1002 1024 0.99
32 42 3.2e-05 0.0035 19.2 1.8 1 23 1030 1052 1030 1052 0.98
33 42 0.00099 0.11 14.5 1.4 1 23 1058 1080 1058 1080 0.98
34 42 0.00068 0.075 15.0 0.4 1 23 1102 1124 1102 1124 0.97
35 42 0.0037 0.41 12.7 0.9 3 23 1132 1152 1130 1152 0.96
36 42 0.00016 0.017 17.0 0.9 1 23 1158 1180 1158 1180 0.98
37 42 0.026 2.9 10.0 2.2 1 23 1187 1209 1187 1209 0.97
38 42 0.00026 0.028 16.3 1.2 1 23 1216 1238 1216 1238 0.97
39 42 0.00038 0.042 15.8 0.4 1 23 1244 1266 1244 1266 0.99
40 42 0.0049 0.54 12.3 2.2 2 23 1273 1294 1272 1294 0.95
41 42 0.015 1.6 10.8 3.5 1 23 1301 1323 1301 1323 0.98
42 42 0.0093 1 11.4 1.6 5 23 1333 1351 1332 1351 0.95

Sequence Information

Coding Sequence
ATGGGCTCACACATACCGGCGTTACAAATTTCTATGAAAACTTCAATTTTGAACTCGCAGAACCTAATGTACGAGTTGGATGCCAAACCTTATTATTTTACACAACTGTGTATTTCATTTGTAAATATACGTAGATACCAGGGGATTTCTAAATCCaaaagtttggacgagaaaacaaataaatgcgATGTGTGTGACTCAGAGTTTAAATCTCCGGGGTATTTACAGAAGCATTTAttgatacacaccggcgagaagccgttcggctGTGATCTTTGCTCTCGCAAGTTTCGACACCTCGGgaatttgaagcagcacatgTTGATACACACCGGTGAAAAACCGTATAGTTGTGAGCTTTGCGGTTACAGGTGTCCGCGGCTCGGAAATTTAAAACAGCACGTGCTAATACATACCGGAGAGAAGCCGTTCACCTGCGATCATTGTGAATATAACTGCCGACGATCGGGGGATTTAAAACGGCACGTGTTGACACATACGAGCGAGAAGCCCTTCCACTGTGATCAttgcgattatagatgccgacaGACGAGAGAGTTGAGACTGCATAAGTTAACACATTCCGACGAGAAGCCGCTCAGTTGTAATTTCTGCGATTATAGATGTCGACAGTTAAAAGAGCTGAAGCgacacatgttaatacacaccgagGAGAAGCCGCGCAGCTGTAATTTCTGCGATTATAGGTGTCGACAACCCGGAGAGTTGAAACTGCATATGTTAACGCACGCCGGAGAAAAGCGATTCACTTGTGACCtatgtgattataaatgccgaagaCTTAGAGAATTGAAACGGCATAAGTTAATACACACCGATGGGAAGCCGCTAAATTGTAGTCTTTGCGAGTATAAATGCCGCCAACCCAGAGAGTTGAAACTGCACATGTTAACACATACTGACGAGAAACCAGtcagttgtagtctttgcgaGTACAAATGTCGGCAGACCAGGGAGTTGAAACgacacatgttaatacacaccggccAAAAACCGTTTAGTTGTAaactctgcgattataaatgccggaaATCTGAGGAGTTGAAGACGCACATatTTCAACCACCGGCTGAACACTATGATTACAAATCCTTAAACTCTCTCAATTTGAATCGACACATGTTGCCACACACCGCCGACGAGCAGCAGCTAATTTGTGGACTTTGCGATTATGAATGTGGCAAAACCGAGACGTTGAAATACCACATGTTGACGCACATCACCGGCGAGGAGAAGCCCTTCAGTTGCGATCACTGCGATTATAAAAGCGTGCGTCCCAAAGCGTTAAGGCTGCACATGTTGAAACACACCGGCGATGACCGGTTGAGTTGCAACCTTTGCAGTTATAAATGTCGACGGTCAGGGACGTTGGAGCAGCACATGTTGAAATACCACAGCGAGGAGTCGTTCAGCTGTaacctctgcgattataaatcccCCAATCAAACTAATTTGAAACGGCACGAGTTGGTGCACACCGACTATAAGCCGTTCGGCTGCGATCTCTGCAATCATAAATTTCGACAACTCAAGGATTTGAGGCGGCACATGCTGagacacaccggcgagaaacccaTCAGTTgcaatctttgcgattacaagtgtcgaAGGGCGAAATCGTTGACGCAACACATGATGACGCACACCGGTCAGAGACCGCTGAATTGTGATATTTGCAGGTACAGATGTCGGCAGGCGAAAGATTTAAAGCGACACATGTTAAGACATTCCGACCAGATGCCGTATAGatttcaaATTGTGTCCAAATTGCAAATTCGAGATCCTTGCAAGATGCCGCCGTCGTTCAGTTGCGGTCATTGCGATCACCTGTCACCGTACGAGTCAAATTTGAAGCAGCACTTACTACTGAGGCACGTCACCGAGAAATTgatcagttgtgatctctgcggtTACGTGAACACGAATCCCGCGATGTTGAGGCAGCACATGTTGACGCACACCGACGATAACCGGTTGCGTTGTATCTTCTGCAACAATAAATGTCGTAATTCTGAGACGTTGACCaggcacatgttaaaacacaaCAGCACGACGCTGTTCAGTTGTGATATTTGCGGTTACGAATCGCGACACAGGGTGCATATAAAGGGGCACATGTTGCTGCATGAGaggccgttcggttgtgatcagTGCGATTTTAGGTACTACGCCAGCTTCAAGCACTTCTACAGAAAATTCGAATCCCAAGTTCAAGATGGGAATAAGAAAAACGAATGGCTCTGTCGTAAATGTGGTGAAATCCTCCGGACCAAGAAGTTGCTGACGGCGCACAGAAAAGAGCTGCACAGGCCTGAAGACGAGTCGCAGTACAATTACACCTACGACGAGGAAAGGCGCTCGTACACCTGCAACACCTGCGACACGGAAGTGCAGACTTTGGAGGAAATCACATCGCACCTCCTCTGCCACCAGGAAAAATTTAGCTGCGGCGATTGCGGCGAGGTCTTCCCCTGCGCTTACAAGTACTCGGTACACGTCCAAAAGCAGCACAGTGAAGATAAACTGTATCGTTGCCCCACCTGTGAGTACGTCACCGCGAGGATTAGTTCCATACTACAGCACATCAATAGAACACACCTGAGGAAGTTTCCTTATTACTGTAATTTTTGTGGGAAGGGCTTTAGCGACGCGGTTATCTTCAAAGAGCACGAGAATATTCACCTGGGGGCGAAGCCCTTCACTTGCGTCGTCTGCAACAAGGACTTCGCCTTCTCCAGGTATCTACTGATGCACCAAATCAAGCTCCACACGGTCTCCTACAGCGGAGCTCTGATGAAAAACCAATGCCACATATGCAGGAAGATCTTCTCGCGAAGCAGCACCTTGGAGAAACACCACAAGCGCCACGAAAACATCGGCATGCCGAAGCCCAAGACGCACCTGTGCGACGTGTGCGGAAAGGGGTTCGCCACCAAGGAAAAACTGACGGTTCACTATCGCGTACACACCGGCTATAAGCCGTACAAATGTAGCTACTGCGAGAAGAGCTTCACGAAGAAAGAGTACCTGGTGATGCACGAGCGCGTGCACAGCGGCGAAAAGCCGTACTCCTGCGGGTTCTGCGGGAAGTGCTTCAATCAAGACTCGTCGTTGCGGATTCACGTGCGCGGACATACCGGCGAAAAACCGTATCCTTGCCATCTGTGTAGCAACAATTTCGTTTCGAAGGCTGCTCTTAAATATCACATAAAATCGCACCAACGCAtcaccaaatttaaaatcacgGATCGCATAACCGACACTAAACTCAGAGAGAAGCTGTTCAGATGCGTTCTCTGCGACTCCAAATACCGATACCCGTCGGAACTGCAACAGCACATGTTAgcgcacaccggcgagaaacccaTCGCTTGCGACCAGTGCGATTACAAATGCACACGGCTCAGGTATCTGAAGGCGCACgtgttaatacacaccgacgaCAAGCCGTTCAGCTGCGACGTCTGCGATTACAAGACCCGAATATCCGGGAACCTGAGGAGGCACATGTTGAAACACGCCGGCAACAAGAAGCTGTTCAGTTGCGACGCTTGTGATTACAAGTGCCGATTATCCGGAAGCCTCAGAAGGCACGTGTTGAAACACACCCGCGACGAGAAGCTCTTCATTTGCGCCGTTTGTGATTACAAATGTCGATTATCGGGAAACCTGAAAAGGCACATGCTAATACACACAGGCGAGAAGCCGTATacttgcgatctttgcgattacaagggCCGACAACTTGGGAAGTTGAGGGCTCACATGTTAACGCACTCCGGCGAGAAGCCGCTCAGCTGTGACCTTTGCGGATATAAATGCCGGCAGCTTCAATATTTCAAACGACACATGGCGGCACACAACGGCGACGaaaagccgtttagttgtgagcGTTGCGGTTATAAATGTCAACGACGGGGAATGTTGAAGCAACACGTCTTAAAGCACACCAATGAGAAGCCGATTGGTTCTAGTATTTGCGGTTATAAATGCCGAAAACGCAGAGAGttgaaacggcacatgttgTTACACACCGACGGGATACCCGTCAGTTCCGATCTTGGCGAGTAG
Protein Sequence
MGSHIPALQISMKTSILNSQNLMYELDAKPYYFTQLCISFVNIRRYQGISKSKSLDEKTNKCDVCDSEFKSPGYLQKHLLIHTGEKPFGCDLCSRKFRHLGNLKQHMLIHTGEKPYSCELCGYRCPRLGNLKQHVLIHTGEKPFTCDHCEYNCRRSGDLKRHVLTHTSEKPFHCDHCDYRCRQTRELRLHKLTHSDEKPLSCNFCDYRCRQLKELKRHMLIHTEEKPRSCNFCDYRCRQPGELKLHMLTHAGEKRFTCDLCDYKCRRLRELKRHKLIHTDGKPLNCSLCEYKCRQPRELKLHMLTHTDEKPVSCSLCEYKCRQTRELKRHMLIHTGQKPFSCKLCDYKCRKSEELKTHIFQPPAEHYDYKSLNSLNLNRHMLPHTADEQQLICGLCDYECGKTETLKYHMLTHITGEEKPFSCDHCDYKSVRPKALRLHMLKHTGDDRLSCNLCSYKCRRSGTLEQHMLKYHSEESFSCNLCDYKSPNQTNLKRHELVHTDYKPFGCDLCNHKFRQLKDLRRHMLRHTGEKPISCNLCDYKCRRAKSLTQHMMTHTGQRPLNCDICRYRCRQAKDLKRHMLRHSDQMPYRFQIVSKLQIRDPCKMPPSFSCGHCDHLSPYESNLKQHLLLRHVTEKLISCDLCGYVNTNPAMLRQHMLTHTDDNRLRCIFCNNKCRNSETLTRHMLKHNSTTLFSCDICGYESRHRVHIKGHMLLHERPFGCDQCDFRYYASFKHFYRKFESQVQDGNKKNEWLCRKCGEILRTKKLLTAHRKELHRPEDESQYNYTYDEERRSYTCNTCDTEVQTLEEITSHLLCHQEKFSCGDCGEVFPCAYKYSVHVQKQHSEDKLYRCPTCEYVTARISSILQHINRTHLRKFPYYCNFCGKGFSDAVIFKEHENIHLGAKPFTCVVCNKDFAFSRYLLMHQIKLHTVSYSGALMKNQCHICRKIFSRSSTLEKHHKRHENIGMPKPKTHLCDVCGKGFATKEKLTVHYRVHTGYKPYKCSYCEKSFTKKEYLVMHERVHSGEKPYSCGFCGKCFNQDSSLRIHVRGHTGEKPYPCHLCSNNFVSKAALKYHIKSHQRITKFKITDRITDTKLREKLFRCVLCDSKYRYPSELQQHMLAHTGEKPIACDQCDYKCTRLRYLKAHVLIHTDDKPFSCDVCDYKTRISGNLRRHMLKHAGNKKLFSCDACDYKCRLSGSLRRHVLKHTRDEKLFICAVCDYKCRLSGNLKRHMLIHTGEKPYTCDLCDYKGRQLGKLRAHMLTHSGEKPLSCDLCGYKCRQLQYFKRHMAAHNGDEKPFSCERCGYKCQRRGMLKQHVLKHTNEKPIGSSICGYKCRKRRELKRHMLLHTDGIPVSSDLGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-