Dhop036848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:78061324-78124423[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 46 0.41 45 6.3 5.1 1 23 34 56 34 56 0.95
2 46 0.077 8.5 8.5 1.8 2 23 63 84 62 84 0.97
3 46 0.0014 0.16 14.0 1.1 1 23 90 112 90 112 0.98
4 46 0.0018 0.2 13.6 1.3 2 23 119 140 118 140 0.96
5 46 3.8e-07 4.2e-05 25.2 0.9 1 23 146 168 146 168 0.98
6 46 0.0019 0.21 13.6 7.1 1 23 174 196 174 196 0.99
7 46 0.46 51 6.1 7.9 1 23 202 224 202 224 0.99
8 46 0.0049 0.55 12.3 1.7 1 23 230 252 230 252 0.97
9 46 0.21 23 7.2 2.8 1 23 258 280 258 280 0.99
10 46 0.0014 0.16 14.0 1.1 1 23 286 308 286 308 0.98
11 46 0.0018 0.2 13.6 1.3 2 23 315 336 314 336 0.96
12 46 3.8e-07 4.2e-05 25.2 0.9 1 23 342 364 342 364 0.98
13 46 0.0019 0.21 13.6 7.1 1 23 370 392 370 392 0.99
14 46 0.46 51 6.1 7.9 1 23 398 420 398 420 0.99
15 46 0.0049 0.55 12.3 1.7 1 23 426 448 426 448 0.97
16 46 0.0014 0.16 14.0 1.1 1 23 482 504 482 504 0.98
17 46 0.0018 0.2 13.6 1.3 2 23 511 532 510 532 0.96
18 46 3.8e-07 4.2e-05 25.2 0.9 1 23 538 560 538 560 0.98
19 46 0.0019 0.21 13.6 7.1 1 23 566 588 566 588 0.99
20 46 0.0051 0.56 12.2 0.9 1 23 603 625 603 625 0.98
21 46 0.022 2.4 10.3 1.1 2 23 632 653 631 653 0.96
22 46 3.8e-07 4.2e-05 25.2 0.9 1 23 659 681 659 681 0.98
23 46 0.0019 0.21 13.6 7.1 1 23 687 709 687 709 0.99
24 46 0.46 51 6.1 7.9 1 23 715 737 715 737 0.99
25 46 0.0049 0.55 12.3 1.7 1 23 743 765 743 765 0.97
26 46 0.0072 0.79 11.8 2.5 1 23 820 842 820 842 0.95
27 46 0.052 5.7 9.1 0.9 2 23 849 870 848 870 0.97
28 46 0.00044 0.049 15.6 2.3 1 23 876 898 876 898 0.98
29 46 0.0029 0.32 13.0 2.9 1 23 904 926 904 926 0.98
30 46 0.15 17 7.6 0.7 1 23 932 954 932 954 0.98
31 46 0.019 2.1 10.4 2.7 2 23 961 983 960 983 0.94
32 46 3.1 3.4e+02 3.5 0.1 12 23 1024 1035 1021 1035 0.86
33 46 1e-05 0.0011 20.7 2.0 1 23 1041 1064 1041 1064 0.98
34 46 0.061 6.8 8.9 0.7 2 23 1085 1106 1084 1106 0.95
35 46 0.044 4.9 9.3 1.5 3 23 1114 1134 1112 1134 0.97
36 46 0.00025 0.028 16.4 2.6 1 23 1140 1162 1140 1162 0.99
37 46 0.0015 0.16 13.9 1.1 1 23 1168 1190 1168 1190 0.98
38 46 0.0011 0.12 14.3 2.3 1 23 1196 1218 1196 1218 0.98
39 46 0.0002 0.022 16.7 2.0 1 23 1239 1261 1239 1261 0.99
40 46 0.049 5.5 9.1 3.0 1 23 1267 1289 1267 1289 0.98
41 46 3.5e-05 0.0039 19.0 0.6 1 23 1295 1317 1295 1317 0.98
42 46 0.0012 0.14 14.2 1.3 1 23 1323 1345 1323 1345 0.97
43 46 1.5e-05 0.0016 20.2 1.0 1 23 1351 1373 1351 1373 0.98
44 46 0.0023 0.25 13.3 3.8 1 23 1379 1401 1379 1401 0.98
45 46 0.0032 0.35 12.9 1.1 1 23 1435 1457 1435 1457 0.98
46 46 9.5e-05 0.011 17.7 4.9 1 23 1463 1485 1463 1485 0.98

Sequence Information

Coding Sequence
ATGACGCAAACAGCAAGAGAAAGGAATTATGGCGACGCATACTTAGATTATTACAGTTTGCTTAAATCGCAGGATTTGTTCGGGGGCGGCGAAAAGCAATTTAAGTGCCACCTATGTAACTTCGCGAGCAACTATTGCGGAAGCTTAAAACGGCACGTAGTGTACCACAGCGACGAGAAACCGTTGAAATGCAACCTCTGCGATTACAGATGTAAGCTTCCCATTCGGTTGAAGGAACACCTGTTGACGCACGGCGGTGATAAGTATTTTAAATGCGTGGTTTGCAACTACGAGTGCGCCCAGGCCAAAGTCTTGAAGAGGCACATGATGATACACAGCGACGAGAAGCTGTTGAAGTGTACGCTCTGCGATTACGGATGCAACTACTCCGACAGTTTGAAGATACACATGCTGTTGCACACCGGCGAGAGCCCTTTCAAATGTACGATTTGCGGTTATCAGTTTCGCCGGGCCACGAACTTACGGCAACACATGATAATACACagcgacgagaaaccgttcaagTGTAATCGCTGCGAGTACTCGTGCAGGCATTCTGGAACCTTGAAGCAACACATGTCGACGCATGACACTGAGGTGCCGTATAAATGCGATCGCTGCGACTATCGATGCACTTGGcataagaattttaaaaggcACCTGTTGACGCATAACGACGATAGGCCTTTCGaatgcgatctttgcgattataagtgtaAGCAGAAGGGGAGATTAAGAGAACATGTGTTGGTACATAGCAGCGAGAAGCCTTTTAAGTGTGATTTTTGCGAGTACAGATGTAAGCTTCCCATTCGGTTGAAGGAACACCTGTTGACGCACGGCGGTGATAAGTATTTTAAATGCGTGGTTTGCAACTACGAGTGCGCCCAGGCCAAAGTCTTGAAGAGGCACATGATGATACACAGCGACGAGAAGCTGTTGAAGTGTACGCTCTGCGATTACGGATGCAACTATTCCGACAGTTTGAAGATACACATGCTGTTGCACACTGGCGATAGCCCTTTCAAATGTACGATTTGCGGTTATCAGTTTCGCCGCGCCACGAACTTACGGCAACACATGATAATACACagcgacgagaaaccgttcaagTGTAATCGCTGCGAGTACTCGTGCAGGCATTCTGGAACCTTGAAGCAACACATGTCGACGCATGACACTGAGGTGCCGTATAAATGCGATCGCTGCGACTATCGATGCACTTGGcataagaattttaaaaggcACCTGTTGACGCATAACGACGATAGACCTTTCGaatgcgatctttgcgattataagtgtaAGCAGAAGGGGAGATTAAGAGAACATGTGTTGGTACATAGTAGCGAGAAGccttttaaatatgatttttgcGAGTACAGATGTAAGCTTCCCATTCGGTTGAAGGAACACCTGTTGACGCACGGCGGTGATAAGTATTTTAAATGCGTGGTTTGCAACTACGAGTGCGCCCAGGCCAAAGTCTTGAAGAGGCACATGATGATACACAGCGACGAGAAGCTGTTGAAGTGTACGCTCTGCGATTACGGATGCAACTATTCCGACAGTTTGAAGATACACATGCTGTTGCACACTGGCGATAGCCCTTTCAAATGTACGATTTGCGGTTATCAGTTTCGCCGCGCCACGAACTTACGGCAACACATGATAATACACagcgacgagaaaccgttcaagTGTAATCGCTGCGAGTACTCGTGCAGGCATTCTGGAACCTTGAAGCAACACATGTCGACGCATGACACTGAGGAACACCTGTTGACGCACGGCGGTGATAAGTATTTTAAATGCGTGGTTTGCAACTACCAGTGCGTCCAGGCCAAAGTCTTGAAGTGGCACATGATGATACACAGCGACGAGAAGCTGTTGAAGTGTACGCTCTGCGATTACGGATGCAACTACTCCGACAGTGTGAAGATACACATGTTGTTGCACACCGGCGATAGCCCTTTCAAATGTACGATTTGCGGTTATCAGTTTCGCCGGGCCACGAACTTACGGCAACACATGATAATACACagcgacgagaaaccgttcaagTGTAATCGCTGCGAGTACTCGTGCAGGCATTCTGGAACCTTGAAGCAACACATGTCGACGCATGACACTGAGGTGCCGTATAAATGCGATCGCTGCGACTATCGATGCACTTGGcataagaattttaaaaggcACCTATTGACGCATAACGATGATAGGCCTTTCGaatgcgatctttgcgattataagtgtaAGCAGAAGGGGAGACTAAGAGAACATGTGTTGGTACATAGCAGCGAGAAGCCTTTTAAGTGTGATTTTTGCGAGTACAGGAAAGACGAAACGTACATCCGCGATGATCACCTAGCACTGAAACCCGGGAAGCTTTCGCTGCAGACGGTGCGGTCGTTTAAGCGCGGACTGTACGCGTGGAAAGACGAAGGCGCCAAACAATTTCTCTGCCGCCTGTGCGAttacaaaagtaaatatttCGGAAACTTGAAGAGGCACATGTTGagacacaccgacgagaagccgatCGAGTGCAACCTTTGCGATTTCAGGACCAAACACGCCATGTGGCTGAAAGAGCACGAACTGACCCACGTCTGCGACAAGCCGTTCAAGTGCGTGATTTGCAATTATCAGTGCAACCAGGCCAGAAACTTGAAGAGGCACGTGATGatacacaccggcgaaaagccgTTTAAGTGCAGCCTCTGCGATTACAGGTGTAACTATTCCGCAAGTTTGAAATCGCACGTGTTGATGCACACCGGCGATAGGCCGTTCAAGTGTACGGCCTGCGATTATCAGTGTGGCCTCGCCGGAAGATTGAAGCGGCATATGGCGGTGCACGATTGCGGGAGGCAACTTAAATGTGACGTTTGCGAGTACAGGTGCAACTCTTCTGGAACTCTGAAGAGGCACGAGTCGAAACAACACGGCGTGAAGACGTCTGCAACTACAAGTGTCCCacgccatgaaaatttaaaatcactcgAATATTCAGGCGAGCACCTCGTGAGTTACACCGGGGAGAAGTCATTCAGATGTGTAATTCGAGACACCGCAGAATTGCAGCGCCACATGTCAACTCACGCGGACGAGAAGTCTTTCAGCTGCAATAAATTTTGCGGTGAAAAGTTCCGGCGAATCGAAAATTTGAAGCGGCACATGTTGACACACACCAGCGAAAAACGTTTCAAGTGTGGGCGGCTCGCAGAATTGAAGCGTGAAAAACAACTAAATTGTGATTCTTGCGGTTACAAGTGCCCACGACTCGCAGACATGAAACGTCACGagttaatacacaccgacgagaaaccgttcggttGCGACCTTTGCGCTTACAAATGCAAACGAGTGACAAACTTGAAAGAGCACATGCTGATAcataccgacgagaaaccgtacGTTTGCGGCGTTTGCAGTTACAAATGCAAGCGACTTACGAACTTGAAAGAGCACATGCTGACACATACGGAcaagaaaccgttcagttgtgatctttgcgctTACAAAAGCAAACGACTGACGAATTTGAAAGTGCACATGCTGACGCATGCCGATAAGgaaccgttcagttgtggtcTTTGCGCTTACAAGTGCAAACGACCGACGAATTTGAAGGTGCACATGTTACGACACACCGACGAAAAaaaacACGAAATATTTAATGACAGCGAAGAATACGGAGACAAGAAACCGTTCAAATGCCACGCGTGCGACTACAGAAGTAACGACTCCGGGAACTTAAACAGACACATCTCGACACACAACGACGAAAGACCGTTCAAATGTAACGTCTGTGATTACAGGTGCAAGCTATCTCGGAGGCTGAAGGATCACGTCCTGATTCACAGCGACGAAAAGCGGTTTAAATGTGCGGTTTGCGATTACGAATGCGGTCGCGCTGCAAACTTGAAGAGACACATGATggtacacaccgacgagaaaccgttcaacTGCACCCTCTGCGATTACAGGTGCAGTAACCCCATCAGTTTAAAAGCGCACGTGTCCATGCACGCCGGTGACAAGCCTTTTAAATGTCTGATCTGCGGTTATCAGTATCGCCGAGCTGGAAACTTGAGGCAACACACGAGGTTGCATACTGACGGAAGGCCGTTCAAGTGTAATCTCTGCGAATACGAATGTAACAATTCCGTGTCTTTAAAGACGCACATGTTTACGCACGGCGGCGAAGAGCAGTTTCAGTGCAAATTCTGCGACTTTCGTTGTAAGTGGCATAAAACTTTCAAATCGCATCTGTTGACGCACAACGGAGGTAAGCCGTTCGAATGTGaaatttgcgattataaatgcgagGAGCGGGGGAGGTTAAAACAGCATATGCTGGTGCACAGCAGTGAAAGGCCTTTTGAGTGTGACGTTTGCCACTACAAGTGTAAACGGGCCGGGGAATTAAAAACGCACATGCGACGACATGAGTGA
Protein Sequence
MTQTARERNYGDAYLDYYSLLKSQDLFGGGEKQFKCHLCNFASNYCGSLKRHVVYHSDEKPLKCNLCDYRCKLPIRLKEHLLTHGGDKYFKCVVCNYECAQAKVLKRHMMIHSDEKLLKCTLCDYGCNYSDSLKIHMLLHTGESPFKCTICGYQFRRATNLRQHMIIHSDEKPFKCNRCEYSCRHSGTLKQHMSTHDTEVPYKCDRCDYRCTWHKNFKRHLLTHNDDRPFECDLCDYKCKQKGRLREHVLVHSSEKPFKCDFCEYRCKLPIRLKEHLLTHGGDKYFKCVVCNYECAQAKVLKRHMMIHSDEKLLKCTLCDYGCNYSDSLKIHMLLHTGDSPFKCTICGYQFRRATNLRQHMIIHSDEKPFKCNRCEYSCRHSGTLKQHMSTHDTEVPYKCDRCDYRCTWHKNFKRHLLTHNDDRPFECDLCDYKCKQKGRLREHVLVHSSEKPFKYDFCEYRCKLPIRLKEHLLTHGGDKYFKCVVCNYECAQAKVLKRHMMIHSDEKLLKCTLCDYGCNYSDSLKIHMLLHTGDSPFKCTICGYQFRRATNLRQHMIIHSDEKPFKCNRCEYSCRHSGTLKQHMSTHDTEEHLLTHGGDKYFKCVVCNYQCVQAKVLKWHMMIHSDEKLLKCTLCDYGCNYSDSVKIHMLLHTGDSPFKCTICGYQFRRATNLRQHMIIHSDEKPFKCNRCEYSCRHSGTLKQHMSTHDTEVPYKCDRCDYRCTWHKNFKRHLLTHNDDRPFECDLCDYKCKQKGRLREHVLVHSSEKPFKCDFCEYRKDETYIRDDHLALKPGKLSLQTVRSFKRGLYAWKDEGAKQFLCRLCDYKSKYFGNLKRHMLRHTDEKPIECNLCDFRTKHAMWLKEHELTHVCDKPFKCVICNYQCNQARNLKRHVMIHTGEKPFKCSLCDYRCNYSASLKSHVLMHTGDRPFKCTACDYQCGLAGRLKRHMAVHDCGRQLKCDVCEYRCNSSGTLKRHESKQHGVKTSATTSVPRHENLKSLEYSGEHLVSYTGEKSFRCVIRDTAELQRHMSTHADEKSFSCNKFCGEKFRRIENLKRHMLTHTSEKRFKCGRLAELKREKQLNCDSCGYKCPRLADMKRHELIHTDEKPFGCDLCAYKCKRVTNLKEHMLIHTDEKPYVCGVCSYKCKRLTNLKEHMLTHTDKKPFSCDLCAYKSKRLTNLKVHMLTHADKEPFSCGLCAYKCKRPTNLKVHMLRHTDEKKHEIFNDSEEYGDKKPFKCHACDYRSNDSGNLNRHISTHNDERPFKCNVCDYRCKLSRRLKDHVLIHSDEKRFKCAVCDYECGRAANLKRHMMVHTDEKPFNCTLCDYRCSNPISLKAHVSMHAGDKPFKCLICGYQYRRAGNLRQHTRLHTDGRPFKCNLCEYECNNSVSLKTHMFTHGGEEQFQCKFCDFRCKWHKTFKSHLLTHNGGKPFECEICDYKCEERGRLKQHMLVHSSERPFECDVCHYKCKRAGELKTHMRRHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-