Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00026 0.39 12.3 0.2 10 40 103 130 98 133 0.89

2 6 0.0001 0.15 13.6 1.1 2 39 124 157 123 165 0.88

3 6 8.6e-05 0.13 13.8 0.9 1 39 151 185 151 192 0.89

4 6 5.7 8.6e+03 -1.6 2.0 17 40 194 214 183 216 0.78

5 6 0.0081 12 7.5 1.9 5 38 211 240 207 240 0.80

6 6 0.028 42 5.8 0.3 18 41 251 271 247 280 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00026	0.39	12.3	0.2	10	40	103	130	98	133	0.89
2	6	0.0001	0.15	13.6	1.1	2	39	124	157	123	165	0.88
3	6	8.6e-05	0.13	13.8	0.9	1	39	151	185	151	192	0.89
4	6	5.7	8.6e+03	-1.6	2.0	17	40	194	214	183	216	0.78
5	6	0.0081	12	7.5	1.9	5	38	211	240	207	240	0.80
6	6	0.028	42	5.8	0.3	18	41	251	271	247	280	0.82

Coding Sequence: ATGTCTTCGGAGGAAGTCCTCGTGCAAATCGCAGAGCCCGTGGAAATGCTGGAAGAAAATTACACGTTGCTTCCGTACATCAAAGTGGATGATGAGGGCCTGATGGTTTTGAACGAGGAGATCTACGAGGAGCAAGCGAGCGACGAGCAAGTGCTTTGCGTCCCTATAACTGAGACGCTATTTGACTGTAACATCGAGAGTGATATAATCGAGGAACAGGTGGAATCAGGTGATTTCCTCAGTGAGCATAACTATCACACTATTTCCGATGGGGAGAATCCCTATGATATGTATCTTGAAGACGTGATCAGCAAGGATAATTCGAAACTGCAATGCCCCTTGTGTATGAAGGTGTTGAAAGCGACTGATGCTTTCTATCGACATTTGAGGATACATTCTGGGGAGAAACCATATCAGTGTGAGCTTTGTGATAAGAAGTTTTCGCAACAGAGTAATTTGTGGAAGCACATCCTTATTCATACAGGAGAAAGAAGATTTGAATGCCCTCAATGCGGCAAGAAATTCTCTCAGAGAGCCAACATGCAAAAGCACATGATGGTTCACACTGGAGAAAAACCTTTCGAATGCTACATTTGCTCAAGGTTGTTCACTCAAAGAGCTAACTTAAACAAACACATTAGGATACATACAgGAGAAAAACCTTACACTTGTAAATACTGTAGCCGACAATTCGCACAGCAATCCAACATGCAGAAGCATGAACTTCTTCACGAAGGCCTCAAACCGTTTTCGTGCGGAATTTGTTCGGCTGCCTTCGCTCAACAGAGCAACTTAAAGAAGCACGTCGTGACCCATTTCAACAAAGAGAGGACCCACAAGTCCGTCGCTGCCAGAACATGTGATATGTCTAAGTCATATTCTGTGGTTTGTGAAAACCCCTATACCAAAACTGATTTGTATTACGGACAAGTAAAAGACTGCATAGTTGAACCGGGTACGTTCCTAGATACCTTTGTGGATGGTAGAAATCAAGTCTACTTCGATTCCTCCAGCAACGTGAAAATCGAGATCGAGGTTGAACAGAATAGGTCTTTTTAA
Protein Sequence: MSSEEVLVQIAEPVEMLEENYTLLPYIKVDDEGLMVLNEEIYEEQASDEQVLCVPITETLFDCNIESDIIEEQVESGDFLSEHNYHTISDGENPYDMYLEDVISKDNSKLQCPLCMKVLKATDAFYRHLRIHSGEKPYQCELCDKKFSQQSNLWKHILIHTGERRFECPQCGKKFSQRANMQKHMMVHTGEKPFECYICSRLFTQRANLNKHIRIHTGEKPYTCKYCSRQFAQQSNMQKHELLHEGLKPFSCGICSAAFAQQSNLKKHVVTHFNKERTHKSVAARTCDMSKSYSVVCENPYTKTDLYYGQVKDCIVEPGTFLDTFVDGRNQVYFDSSSNVKIEIEVEQNRSF

Sequence clustering based on sequence similarity using MMseqs2