Dhop044989.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065426.1:74747704-74764830[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.073 19 6.6 0.0 24 42 59 78 53 80 0.87 2 3 0.073 19 6.6 0.0 24 42 267 286 261 288 0.87 3 3 0.073 19 6.6 0.0 24 42 323 342 317 344 0.87
Sequence Information
- Coding Sequence
- ATGCATGAGTGGTTGATAAAGCTCGGCGGTGATGGTGGTGGCGAGGATGCTGACAAAGGTGGTGGCAAGAAGGGTGGAGTGATCTATGCGGCTTTTGGAAGAAACTCGTCCAGAGGACAATGGACTGCTGCACTGGCGTTGCAGGATCAAACGAGAAGTGTCAATTCCATTGTAAAAGAATTTGGAATTCCTTTGCGAACTCTTCTTAGGAAAGTTAACAAGAATCACTTAGATAAAAGGAGTTTAGATAAGCCCAGGAAGATTTTCAATATAGATGAAAGTggtttgcaattatgtaacaaGCCCGATAAAGTGATTGCTTCGAAAGGGTCCAAAGGTGTTCAAAGTCTCACCAGTGCAGAAAAAGGTGAAAGTATTAGTATTGTCGTTTGCTGCAACGTAAAAGGAAATTTTCTTCCACAGTACATGATCTTCCgtggtaaaaacaaaaagaaagagtTCGAGGACAACATGCCTCCAGGATCTGTTATTGTGATGTCACCTGATTCAGCCTACGTCAAGAGCAGTATTTTCCTATCATGGATAAGAGCGTTTTTCCCCAGAAAAGAACCGGGTCCAGTTGTTTCGATTCTTGACAGTCACGCCTCACATTGTAACGACGTGGGTATTTTAGATTTCTTAGCGGAAAACGACATTCACGTTATCTGTGTACCCAGCACCATTGCTTGCAACCCCTCGACAGTGATCTATGCGGCTTTTGGAAGAAACTCGTCCAGAGGACAATGGACTGCTGCACTGGCGTTGCAGGATCAAACGAGAAGTGTCAATTCCATTGTAAAAGAATTTGGAATTCCTTTGCGAACTCTTCTTAGGAAAGTTAACAAGAATCACTTAGATAAAAGGAGTTTAGTGATCTATGCGGCTTTTGGAAGAAACTCGTCCAGAGGACAATGGACTGCTGCACTGGCGTTGCAGGATCAAACGAGAAGTGTCAATTCCATTGTAAAAGAATTTGGAATTCCTTTGCGAACTCTTCTTAGGAAAGTTAACAAGAATCACTTAGATAAAAGGAGTTTAGATAAGCCCAGGAAGATTTTCAATATAGATGAAAGTggtttgcaattatgtaacaaGCCCGATAAAGTGATTGCTTCGAAAAGGGTCCAAGGTGTTCAAAGTCTCACCAGTGCAGAAAAAGGTGAAAGTATTAGTATTGTCGTTTGCTGCAACGTAAAAGGAAATTTTCTTCCACAGTACATGATCTTCCgtggtaaaaacaaaaagaaagagtTCGAGGACAACATGCCTCCAGGATCTGTTATTGTGATGTCACCTGATTCAGCCTACGTCAAGAGCAGTATTTTCCTATCATGGATAAGAGCGTTTTTCCCCAGAAAAGAACCGGGTCCAGTTGTTTCGATTCTTGACAGTCACGCCTCACATTGTAACGACGTGGGTATTTTAGATTTCTTAGCGGAAAACGACATTCACGTTATCTGTGTACCCAGCACCATTGCTTGCAACCCCTCGACAGATAAGCCCAGGAAGATTTTCAATATAGATGAAAGTggtttgcaattatgtaacaaGCCCGATAAAGTGATTGCTTCGAAAGGGTCCAAAGGTGTTCAAAGTCTCACCAGTGCAGAAAAAGGTGAAAGTATTAGTATTGTCGTTTGCTGCAACGTAAAAGGAAATTTTCTTCCACAGTACATGATCTTCCgtggtaaaaacaaaaagaaagagtTCGAGGACAACATGCCTCCAGGATCTGTTATTGTGATGTCACCTGATTCAGCCTACGTCAAGAGCAGTATTTTCCTATCATGGATAAGAGCGTTTTTTCCCCAGAAAAGAACCGGATTTCTTAGCGGAAAACGACATTCACGTTATCTGTGTACCCAGCACCATTGCTTGCAACCCCTCGACAGGTCTTTCATTAAACTACTCAAAACTCATTGGAATGAAGCTTGTAGGCATTGGATAAAGTCTCATCCTGGACGCAGAATTACCAGATACCAATTTAGAGGAATCTTAAACCAAGCCTGGAAACAAGCTGCAACCAACCAAAATGGAGCATCAGGGTTTGAAGCGAAAATTCCAGACTGTGCCTATTATGTAGCTGATCGCATTACAGGAGCTAATGATAACTACTGCTGA
- Protein Sequence
- MHEWLIKLGGDGGGEDADKGGGKKGGVIYAAFGRNSSRGQWTAALALQDQTRSVNSIVKEFGIPLRTLLRKVNKNHLDKRSLDKPRKIFNIDESGLQLCNKPDKVIASKGSKGVQSLTSAEKGESISIVVCCNVKGNFLPQYMIFRGKNKKKEFEDNMPPGSVIVMSPDSAYVKSSIFLSWIRAFFPRKEPGPVVSILDSHASHCNDVGILDFLAENDIHVICVPSTIACNPSTVIYAAFGRNSSRGQWTAALALQDQTRSVNSIVKEFGIPLRTLLRKVNKNHLDKRSLVIYAAFGRNSSRGQWTAALALQDQTRSVNSIVKEFGIPLRTLLRKVNKNHLDKRSLDKPRKIFNIDESGLQLCNKPDKVIASKRVQGVQSLTSAEKGESISIVVCCNVKGNFLPQYMIFRGKNKKKEFEDNMPPGSVIVMSPDSAYVKSSIFLSWIRAFFPRKEPGPVVSILDSHASHCNDVGILDFLAENDIHVICVPSTIACNPSTDKPRKIFNIDESGLQLCNKPDKVIASKGSKGVQSLTSAEKGESISIVVCCNVKGNFLPQYMIFRGKNKKKEFEDNMPPGSVIVMSPDSAYVKSSIFLSWIRAFFPQKRTGFLSGKRHSRYLCTQHHCLQPLDRSFIKLLKTHWNEACRHWIKSHPGRRITRYQFRGILNQAWKQAATNQNGASGFEAKIPDCAYYVADRITGANDNYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -