Dhop028393.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065424.1:43558037-43558489[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-08 9.3e-06 26.8 0.0 5 39 1 35 1 39 0.91
Sequence Information
- Coding Sequence
- ATGAACCTTGCCATTGACGATGTTAAAAATGGACGAAAAACTCTCCGAGGGGCTGCGAAGGCTTATAAAATACCCCGCTCAACCCTTCTGCATCGCGTAAAAGGCACCAGAGGAAAGGGTTGCGTCTCAACAAATGGCTCTGGTGGGGGAGGGAAACGTCAATTAGCTCCTGAACATGAAGCAGAGCTCGTCAAGTCTTTAAAAACAATGGAGAAATGGGGATTTGCcctaacaaaaaaagaaattttagaaattgttcAGGTGTTTATTCAGAAGAACAGTATAGTAACTAACTTTAGAAACGATAAGCCTGGAGAGGAGTGGTttctagaatttaaaaaaagaaacaaattctcTATTAAAAAACCACAGCATGTTAAATGTGCCCGTATAAAATCAAGAAATCCATTTACTTTTTATGAGTTCTACGAGTTATTGTCCGCTACCATCTAA
- Protein Sequence
- MNLAIDDVKNGRKTLRGAAKAYKIPRSTLLHRVKGTRGKGCVSTNGSGGGGKRQLAPEHEAELVKSLKTMEKWGFALTKKEILEIVQVFIQKNSIVTNFRNDKPGEEWFLEFKKRNKFSIKKPQHVKCARIKSRNPFTFYEFYELLSATI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464683; iTF_00065314; iTF_00065410; iTF_00065382; iTF_00065896; iTF_00066248; iTF_00065321; iTF_00066381; iTF_00065555; iTF_00065374;
- 90% Identity
- iTF_00065374;
- 80% Identity
- -