Dhop015434.2
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065421.1:41474296-41475066[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-08 1.1e-05 26.6 0.0 4 42 13 51 10 54 0.90
Sequence Information
- Coding Sequence
- ATGGCAAAACGACAGTGTAATAATAAATCTCAAAATGACATGAAAGAAGctatagaaaaatttaatagtgGTGATTTAAAATTCAATGAGGCTTGCCGTGTTTACGGTATATCTAAACCAACTTTTAGACGACATCTGAAAAGCTTAAACTCGCACCAAAAAATTGGATGTCCTAAAGATTTAATTGCAGAGATGGAAGCAGAATTAGTTCGACATGTTCTGGAATTAGAGTCCCGATTTTTTGGCTTAACAATAACAGATTTACGCCGCCTAGCATTTCAGTTAGCTGAAAAATATGAACTCCCACATCGTTTcaataaagagaaaaaattagCAGGGTGGAAATGGTATTATAAATTCATGAAAGATCGTCCTGAAATTTCATTAAGAACCCCAGAATCAACTTCTATGGCTCGCTGTAAAGGGTTCAATAAGAAAGTTGTTATGGAATTCTTTGATAAATATGACAACGAAAAATTTACAGGACGCCAAATTTACAATGTGGATGAAACAAGTCTTAGCACAGTCCATAAGCCTGCTAAAATTTTAGCTCAGAAAGGGAAACATCAAATTGGAGCAGTAACAAGCGGAGAACGCGGGACGAATACGACATGCATTTGTTGTATGAACGCAGTTGGAGAGTTTATCCCACCTATGCTCATATTTAAACGTAAAAGAATGACAGATGTTCTCAAGCGAGGTGGCCCACCTAACACATTGTACACTTGTTCTGATAGTGGATGGATAGTGGCTTCATTATTTGTAGAGTAG
- Protein Sequence
- MAKRQCNNKSQNDMKEAIEKFNSGDLKFNEACRVYGISKPTFRRHLKSLNSHQKIGCPKDLIAEMEAELVRHVLELESRFFGLTITDLRRLAFQLAEKYELPHRFNKEKKLAGWKWYYKFMKDRPEISLRTPESTSMARCKGFNKKVVMEFFDKYDNEKFTGRQIYNVDETSLSTVHKPAKILAQKGKHQIGAVTSGERGTNTTCICCMNAVGEFIPPMLIFKRKRMTDVLKRGGPPNTLYTCSDSGWIVASLFVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -