Dhop043727.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065426.1:67940131-67942614[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 4.4e-05 24.6 0.0 2 44 13 55 12 56 0.92 2 2 0.18 45 5.4 0.0 19 30 101 112 99 119 0.83
Sequence Information
- Coding Sequence
- atgaaaagaaaCGGACGAAAATTGTTCCAGTATGCTCCAGAACAGTTAGAGAGAGCACTGCAAGacagaaaagaaaatcgattgGGAATCAGGGCGGCTAGTCGACAATTTGGAATTCCCAAAACGACAATAATTGACCGACTGAAGGGTAGAGTACAAGTAGCTCGAAGAAAAACCGGACCAGAACCCATTTTGACCGCTGAAgtcgaaaaaaaattgtggaatgATCATTACCATCGCAAAATGCGGTTTCCCACTGAAGAAAGCCGACCTCCTAAATACGGTGCAGAAAATCGCAGCGGAAACCGagctgcGACTGTATATGGAATCAGTTCTGAGGTGATATTGACCGAAATAGATGAAAATGCTAATAACACATCGTCACTAACCACACGACGAAGCCTACTTGAAATAGGAGCCACAGTCCCATTGAATAAGTGCACCATTATCCCAGTACCAACCGTCCAGTTGAATGTCACCCAACCATGTTCACCTGCATCAGAACTATGGCTCCAAGATACAAAGGGGAATCCATCAAATGATGAACCATTCACAGCTACGTTAGAATCTGGGAACCAAGAGACAGAAGACAGTCCTCCAAATGATGACGCTGCAATCGAATTCAAGCTCCAAGATACAGAGGAGAATCCATCAAATGATGAACCATTCACAGCTATGTTAGAATTTAGTATCCAAGAGAAAGGGGACAATCCTCCAAATGATGAAGTATTATCAGCTGCAATCGCATTCAACCTCCAAGAGCCAGCTGGGAATCGTACAAATGATCGTGCATTATCACCTGCAATCAAATCCAATGTCCAAGAAACAGATGGGAATCCACCAAATGCTCTCAAATTCGATTCGTCACTATCTGCTAGAAAACATCCTTTGCAATCCATTCTAGGTAATAACTTGTTTCTCCCCCCACCACTCCAGTGTACCACGAAAAGCAAGAGAATAAGAGATAATTTTCCTGGTGCAATTTCATCCAAGGCTTGGAGAATGAAACTAACAAAAAAGGATGAAGACAAGGCTCAAAAAGAAAATGACGCAAGCAGGAAACGGGAAGAGAAAAGAACTCAAGCTACAAATCGGAAGAAGGAAAAAgttaataagaaaaaagaaaaatctgtGAAGAAGAACGAAACTATTACAAAAGGGAATTTGCAATGTTGTGCTTGTCACGACGTTTTGATTAGTGACACAGAAGATGAGGACGAAAAGAATATAGGATGCGATAAGTGTCCCAATTTGTCGGCATGTCTTACGATGAGGCCGCTAATAAAGAATATGTGTGCTTTATGTGCTCTTAACTACACCAATTGA
- Protein Sequence
- MKRNGRKLFQYAPEQLERALQDRKENRLGIRAASRQFGIPKTTIIDRLKGRVQVARRKTGPEPILTAEVEKKLWNDHYHRKMRFPTEESRPPKYGAENRSGNRAATVYGISSEVILTEIDENANNTSSLTTRRSLLEIGATVPLNKCTIIPVPTVQLNVTQPCSPASELWLQDTKGNPSNDEPFTATLESGNQETEDSPPNDDAAIEFKLQDTEENPSNDEPFTAMLEFSIQEKGDNPPNDEVLSAAIAFNLQEPAGNRTNDRALSPAIKSNVQETDGNPPNALKFDSSLSARKHPLQSILGNNLFLPPPLQCTTKSKRIRDNFPGAISSKAWRMKLTKKDEDKAQKENDASRKREEKRTQATNRKKEKVNKKKEKSVKKNETITKGNLQCCACHDVLISDTEDEDEKNIGCDKCPNLSACLTMRPLIKNMCALCALNYTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -