Dhop014908.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065421.1:37345291-37348477[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-13 1.9e-10 41.8 0.0 2 41 19 58 18 61 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGCAATTATAAGACACCATTAGGTAGTcgaaaaatttgtaattacgaTCCAAACACTTTCGCCGAAGCTTTACGTCATGTCAAGAACAGAAGAATGACATTAAGAGAAGCTCAAGATGTTTATGGTATACCAAGAACAACGTTACATCGGCATCTCAAGGGGGGGTTAAAATCCTTAGGCGGGCAAACTGTTCTTTCTCCTAAAGAAGAAGAGTTAATAGTGAAAGTTATAAAAATCGCAGCTGAGTGGGGATATCCCTTAGAGGGTGTAGACATTCGTCGCCTCATCAAAGGCATACTTGACAGACTTGGAAGTCGTGAAAGTACATTCAAAAACAATTTTCCAGGAGAAGATTGGATTCAGTTGTTTTTGAAGCGAAGTGCCAAAGACCTCACTATTCGTTTatcagaaaatattaaaagggcaagagCTGCTATTTCTCCTGaagttattaatgaattttttgacAACTTGGAAACTAGTCTTGATGGTGTGCCTCCAGAAAACATCCTTAATTATGACGAAACAAATTTTGTAGACGATCCCGGAAGAAGAAAAGTGGTCGTGCGGAGGTCTGCAAAACGTGCTGAACGAATAATCGACTCTTCAAAGAGCGCAACATCCGTAATGTTTTCAGTAACAGCCGATGGTCATATGCTTCCTCCATTTGTGGTATACAAAAATGAATATATTTACGATAACTGGACCCTTAATGGTTCTAAAGACTGTCGGTTTGCAAAATCAAAAAGTGGATGGTTTGATCAGAGTTTATTTGAAGAATGGTTTTTGCACATTGTGTTCCCTTATTTTCGGCGCAAAGAAGGTAAAAAGGTATTAATAGGGGACAATTTAGCCAGCCACTTATCCCTTACgGTGATACAAGAATGTGAAAAAAATGACATTAAATTCGTTCTGCTGCCACCAAATTCTACACATCTCACACAACCTCTCGACGTGTCGGTCTTTGGACTTATGAAGAAAAGTTGGAGAAGAGTTTTAACAtattggaaaaagaaaaacaaaggtcCTATACCCAAGCAAAATTTTCCATCTTTGCTTAATCGTTGTTTGCGCGAGATTGAAACGAACACTTCTGAGAATATTAAATCTGGATTTCGTTCAACGGGCATTGTACCAATAAACAGAGaccaagttttaaaaaaattaccgaacCGACCGTTGAATGAAAATAACAGAATCACAGACTCCACAAAAATTAATGTCCCCCCTGGACAGAGTGTAACACAGGACGATTTTAACAATGATGGAAGTGACATAAATGATAATAGTGCTGGACCTAGCCACAGAGTTAGTGAGGAAAATGAAGATTTAGATTTTCTTGTAGATGAAGATCTTGACGAAGTTTTAGCTGCAGACAGCCTTCAAGATACAGAATATGATATTTCACTGGATGATCTCAAAATCGACGACTTTATAGAAGTAAAATTTACTACCAAGAAAACCGAAAAGTATTTTGTGGGCGTAATCAAGTCTTTCACCAAGACTGAAGATGGGACTGCCATTACTGTCCATTTTTTGCATCCTTATCCAAAGATTGACAACACATTTATATTCCCAGATGTTCCTGATATCAGTGATGTAGAAATATCACAAATAACACAGAAATTACAGAAACCAATTCAGTTAAGGAGAGGTGGATATCAGTTTAAAGATGGAAAACTTCTGTAA
- Protein Sequence
- MPRNYKTPLGSRKICNYDPNTFAEALRHVKNRRMTLREAQDVYGIPRTTLHRHLKGGLKSLGGQTVLSPKEEELIVKVIKIAAEWGYPLEGVDIRRLIKGILDRLGSRESTFKNNFPGEDWIQLFLKRSAKDLTIRLSENIKRARAAISPEVINEFFDNLETSLDGVPPENILNYDETNFVDDPGRRKVVVRRSAKRAERIIDSSKSATSVMFSVTADGHMLPPFVVYKNEYIYDNWTLNGSKDCRFAKSKSGWFDQSLFEEWFLHIVFPYFRRKEGKKVLIGDNLASHLSLTVIQECEKNDIKFVLLPPNSTHLTQPLDVSVFGLMKKSWRRVLTYWKKKNKGPIPKQNFPSLLNRCLREIETNTSENIKSGFRSTGIVPINRDQVLKKLPNRPLNENNRITDSTKINVPPGQSVTQDDFNNDGSDINDNSAGPSHRVSEENEDLDFLVDEDLDEVLAADSLQDTEYDISLDDLKIDDFIEVKFTTKKTEKYFVGVIKSFTKTEDGTAITVHFLHPYPKIDNTFIFPDVPDISDVEISQITQKLQKPIQLRRGGYQFKDGKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464704;
- 90% Identity
- -
- 80% Identity
- -