Basic Information

Insect: Dolichoris vasculosae
Gene Symbol: -
Assembly: GCA_018907195.1
Location: JACCHY010000023.1:3403807-3405981[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.64 1.6e+02 4.5 0.9 1 23 41 64 41 64 0.89

2 14 0.022 5.4 9.1 3.5 2 23 127 149 127 149 0.96

3 14 0.029 7.1 8.7 3.0 1 23 174 197 174 197 0.95

4 14 1.5 3.6e+02 3.3 0.3 1 23 323 346 323 346 0.84

5 14 0.015 3.6 9.6 4.1 1 23 361 384 361 384 0.97

6 14 2.9 7e+02 2.4 1.1 1 23 394 417 394 417 0.90

7 14 0.014 3.4 9.7 1.4 1 23 466 489 466 489 0.97

8 14 0.033 8.2 8.5 1.8 1 23 508 531 508 531 0.95

9 14 1.3e-05 0.0031 19.3 1.3 1 23 537 560 537 560 0.95

10 14 0.00028 0.07 15.0 1.2 3 23 567 588 565 588 0.93

11 14 0.00077 0.19 13.7 0.4 1 23 593 616 593 616 0.97

12 14 9.1e-07 0.00022 22.9 0.6 3 23 624 644 623 644 0.98

13 14 1.9e-05 0.0047 18.7 0.4 1 23 650 672 650 672 0.98

14 14 3.6e-05 0.0088 17.8 2.2 1 23 678 700 678 700 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.64	1.6e+02	4.5	0.9	1	23	41	64	41	64	0.89
2	14	0.022	5.4	9.1	3.5	2	23	127	149	127	149	0.96
3	14	0.029	7.1	8.7	3.0	1	23	174	197	174	197	0.95
4	14	1.5	3.6e+02	3.3	0.3	1	23	323	346	323	346	0.84
5	14	0.015	3.6	9.6	4.1	1	23	361	384	361	384	0.97
6	14	2.9	7e+02	2.4	1.1	1	23	394	417	394	417	0.90
7	14	0.014	3.4	9.7	1.4	1	23	466	489	466	489	0.97
8	14	0.033	8.2	8.5	1.8	1	23	508	531	508	531	0.95
9	14	1.3e-05	0.0031	19.3	1.3	1	23	537	560	537	560	0.95
10	14	0.00028	0.07	15.0	1.2	3	23	567	588	565	588	0.93
11	14	0.00077	0.19	13.7	0.4	1	23	593	616	593	616	0.97
12	14	9.1e-07	0.00022	22.9	0.6	3	23	624	644	623	644	0.98
13	14	1.9e-05	0.0047	18.7	0.4	1	23	650	672	650	672	0.98
14	14	3.6e-05	0.0088	17.8	2.2	1	23	678	700	678	700	0.97

Sequence Information

Coding Sequence: ATGCTTGAGGCGCACAAATTAGCGAGCCACGGAAACAAAAATGAAGAACAATCGTCGACTGTATCTACCGAAGGCAAACAAATTTTCTTCGCGGGCTACCACAAAATCAAAAGCGGTCAATACATTTGTAACTATTGTCCTTTCCGTTCCTCCGTTCGTACAACCGTTTCATCGCACGCAACGCGAAAGCACGTATCTCTGATACAAAATAACTCTGAAACTCCGGTTTCTCAAAGTAAATCCGCGACCAATCAGAACGCTCTATTGAAAGTTGAAATGCTGGAAGACGACGACGAAGATTCCTGGCCAATGGAAGTCGTTGAAGAACTGGAGGAAAACAAAACCGAAGTCGAAGAAACTTTTACAAGCAAAGTACGCGTATGTCCTTACTGTTCCTTCAATACGACCAATAGTTCGACTTTTCACTCCCACGTCAAAAGAAAGCATCGCGATAGAATCAAATCCCTCGGCAAGAAGATCGTTGTGCTCAAGCCTGGAAAAAAGTTAAACGCAGACGAATTCAAGTGTCAGCGCTGTTCCTTCGTAACCTCGAAGAGTGTACTATTACGTAATCATATCATTCACAAGCACAAATCACTCATGCTCGAGTTAAGCTCCGATTTGATACCAAAAACAGAGGACGAAGAAATCAACGAGCTTGAAGAAGTCGAAGAGATCGAAGAGGTCGAGAATTTGTATGTATTAAACGATCCGTATACCTCCGAGCACAAAACCGAGGAAGGTGACGAAACGGCAGAAGCCGAAACAAAAGCTACCGCTACACGTAAATCCCGAAAATGTTTGTTTTGCCCATTCGAATCGTGGATAGACTCGACCATGCAGTCGCATGTATCCCGCTGTCACCGCGGCGAATGTTCTACCGCTACCGCTAATCATCAGCGCGTTTTTCAATTGCCAACGATAACGAGGAGTCGCAGACACCCCAACGCCCAATTGTACACGGGATATGCGTGTCATTACTGCACATTCGTTGCAGCCACCGTAGCGAGCATCAATTCGCACACGGGTCGCGAGCATCAGGGCCAGAAGCAGCCCATAAAAGAAGTCCCCGTCACTGAGTACGATTGCGACCAATGCGATTACAAATCCAGAAACCGCCGTAATATGCAGCTTCACGTAAAACGTTGTCACACTGCTCAAGCCAACGCCGACGGTATGTTTGCCTGTCATGCTTGCTCATACGAAACTTTATCGCGCATGGGCTTAAAGAGGCACATATCTATCAAACACAACCAATCGCGGAGGGATGGAGGGAACAAAGGGAACTATTACGAATGCGATCGGTGCGATTTTAAATGTTTGAACGGTAAAACGATGGACTGGCATAAGAGACAGCACAACGCACCACCGAACGACGAAGACGACGGTAACAGTTATTTCTGCAACGACTGCGATTTTTCTACGTGGACGAAGGGACAATTGTATTTGCATATAAAACGAAAGCACAGGGATTCGGACAGAAACAACAGGGAGACCGAAATCGAACAGTCAGGTAATCTTTTTGCTTGCGAACAATGCGACTACACGAGTAAGAACAAACACGTGATGAAAGTGCACGTGATAAGGAAACACACGAATGATTACAATCACGAGTGCGAAATATGTGGCAAAAAGTATAAGATAAAAGCGGATCTTACGAATCATATACGCTTTCAACATCGAGAACAACCAATTATTTGCGACGTGTGCGGCAAAACTTGTAGGAACAGCAATCTTTTATACTTGCACCAAAAGTTCGCCCATTACAAACCCGAGTTTGAATGCCCGATATGTCACAGAAGAATGGTAAGTCAAGCTAATCTAGACGATCACATACTTAAGCAGCACGAACAAAAGGAGGATGCTATATGCGAAGAATGCGGTAAAAAATTCACGAAACAAGCTAGATTGAAGATACATATGAGAATACACACGGGTATTAAACCTTACACTTGCAAAGTATGTTTAAAAGCCTTTGCTAGAAGAAACGGCCTAAGGCAGCATTTACTCATCCATACCGGCCAAAGACCTTATATTTGCGATATATGTGGCAAGAGTTTTACCCAGAAGACAGGACTAATATGCCACAGAAAGAGCCATCCAGGATCACATCCACCCTTGCCAAGAGTTACTATCGATCATGTATTATCGGATCTTTTAAACGAAGAATGTTGA
Protein Sequence: MLEAHKLASHGNKNEEQSSTVSTEGKQIFFAGYHKIKSGQYICNYCPFRSSVRTTVSSHATRKHVSLIQNNSETPVSQSKSATNQNALLKVEMLEDDDEDSWPMEVVEELEENKTEVEETFTSKVRVCPYCSFNTTNSSTFHSHVKRKHRDRIKSLGKKIVVLKPGKKLNADEFKCQRCSFVTSKSVLLRNHIIHKHKSLMLELSSDLIPKTEDEEINELEEVEEIEEVENLYVLNDPYTSEHKTEEGDETAEAETKATATRKSRKCLFCPFESWIDSTMQSHVSRCHRGECSTATANHQRVFQLPTITRSRRHPNAQLYTGYACHYCTFVAATVASINSHTGREHQGQKQPIKEVPVTEYDCDQCDYKSRNRRNMQLHVKRCHTAQANADGMFACHACSYETLSRMGLKRHISIKHNQSRRDGGNKGNYYECDRCDFKCLNGKTMDWHKRQHNAPPNDEDDGNSYFCNDCDFSTWTKGQLYLHIKRKHRDSDRNNRETEIEQSGNLFACEQCDYTSKNKHVMKVHVIRKHTNDYNHECEICGKKYKIKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQKEDAICEECGKKFTKQARLKIHMRIHTGIKPYTCKVCLKAFARRNGLRQHLLIHTGQRPYICDICGKSFTQKTGLICHRKSHPGSHPPLPRVTIDHVLSDLLNEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -