Dvas042871.1
Basic Information
- Insect
- Dolichoris vasculosae
- Gene Symbol
- -
- Assembly
- GCA_018907195.1
- Location
- JACCHY010000025.1:890750-893589[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0054 1.3 11.0 2.5 1 20 143 162 143 165 0.95 2 13 0.00046 0.11 14.4 0.8 1 23 171 194 171 194 0.93 3 13 5.8e-06 0.0014 20.3 0.8 1 23 200 222 200 222 0.98 4 13 2.2e-06 0.00054 21.6 0.2 1 23 370 392 370 392 0.98 5 13 8.7e-05 0.021 16.6 0.1 2 20 402 420 401 422 0.93 6 13 0.00027 0.066 15.1 2.6 1 20 444 463 444 466 0.92 7 13 0.0034 0.84 11.6 0.5 1 23 471 494 471 494 0.95 8 13 8.8e-07 0.00022 22.9 0.3 1 23 500 522 500 522 0.99 9 13 0.0019 0.46 12.4 6.3 1 23 529 551 529 551 0.98 10 13 0.00032 0.078 14.8 0.4 3 23 559 579 557 579 0.97 11 13 0.00037 0.089 14.7 0.2 1 23 585 608 585 608 0.96 12 13 0.044 11 8.1 0.4 1 23 622 644 622 644 0.97 13 13 0.0044 1.1 11.3 0.0 2 23 888 909 887 909 0.96
Sequence Information
- Coding Sequence
- ATGGATACAAATGAAAATGAACAGTATGTTACATTTTCCTTGGATAATGTACATGAAGGTATACAAGATAATATTTCTCATGAAGAAATATGTGAACCTATTGATGAAAGTGCTTTACAAGAAAGTTTAACTGAAGCTACTGTTGGTGATATAAATCAGAGTGTTAGACAACCTCAAGTTGCTGTAGAAATTTTAACAGAAAATTCAGAAGATGGTCAAAGTTCAATTGTATATCCTATTTATATAAAAAAAGAATCTTCACAACAATTTACAACTGGAGATGAATCAATGGCTGTAGAAGCCTTGCGTCAATTAGGTGGAATGTATCCTTATTTTGAAGAAAAAAAAGTTGGTTGTCTTAATTGTACTGATATGTTTACACAAGTAGAATTGGCTAAGCATCAGACTATATGTTTACCAAATAAGCATATTTGTAATATATGTCGTGAAAAATTTGAAAGAAAAATAGATTTAAGCAATCATATGGTTTGTCATCAGGTAGATCGACCCCATGCTTGTAGAACTTGTGGAAATTTATTTCGATCTAAAGCTAATTTACAAACTCATATGATTGAAATTCATCAAGTTGAACGACCTCATAAATGTTCTGTTTGTGGGGCAGATTTTCAAAGACCATCAAGTTTATCAAATCATATGAAAATTCATAGTTATATTGCAGGAAGAGCTTTAATGCAAGGCCAAGGAAGTAATGTAGCAACAAATATTGAAACATTTAAAATTGATTCTGATTCACGACAACCTTCAATTTTAACAACTACTCTTCAAACCCTACAAAATTTTGAAATACCTCAAGTACAATGGGCTGTACAGACATATAATTATACTAATGATCAAACCAGTGTTGATGTTCTTACAAATCAATCTGGAAAAATAGATACATTACAAGAATTTACTGTATTGCCTACTGGAGAAGTTGCACCATTTGAATATAATTCACAAAATACCATAAATAATTCAATTGGACAATACAATTTATCTTTAAATTCTTTTAATGATTCTGATACATCGATAAAAGTAGAAACTACTAACATGAGTAATGAAATTAAGAGAGATTATATTGAAATAGATTTACAAGAAGATAGAAGATATATTTGTAATCAGTGTGGTGTTAGTTTTGCTCGCGCATCATCCTTAACCTTACATGAAAAAACACATTCAAAAAGTGATTGGGGCTCACCAGTAGAATGTGAATATTGTGATAAACAATTTCGAGATTCTAGTTTTTTAGCTAGTCATCAGACAATTTGTACAAAGAAATTAATGCAAAATAATACAGAACTCAATACATCTAATATAAAATGGGGAAAACATGCTTGTTCAGAATGTGGAAAAAAATTTACAACAAAACAAAAGATGTTTAGACATCAGTGGATTCATAGAAAAAAAACACATTCCTGTGAAGTTTGTGGATCACAGTTTGAGAAGCAATCTGAGCTTGATGAACATCGATTATCTGCTCATCCAGGAGATTCACCATTTACTTGTAATGAATGTGGTAAGAGTTTTGTTTCAAGACAAGGACTTTGGGAACATGGTAGAACTCATGCAGGGAGCCCAACATATTTTCATTGCGATACTTGTTCAAAAACATTTTCTTCTAGACAAGGATATTTAATACATCATCGTACACATACAGGAGAGCGTCCTTATGGTTGCAAATTTTGTTGGAAAGCCTTTCGGGATGGAGGTACTTTAAGAAAACATGAAAGAATACACACTGGGGAAAGACCTCATGTTTGTCCATTGTGTTCAAGAGCATTTAATCAAAAAGTAGTTTTACGTGAACATGTTCGATGGGTTCATGCAGCTGGAAAAAATGAAACTGAGGTTACTGGACCACCATTTTCATGTCCTTTATGTACAATTTTAACTCAAGATCGAGATGAATTATGTGCTCATATTGTTAAACACTCAGATCAAATGATAGCGGAAGCTAAGGCCAAAAGTAATAATATCCCAAAAACTAAATTACAGAAAAAAAAAAGTAAAATATCAAATAAAATACAAAAATCTCATTCAAAATTAGTAGATCAAGTAATTTCTACTTCAGATCAGAATGAAGCTCTATTTTCTATAACAGAACAAGTAGACAGTTCAACAGAAATACAAAATACTTATTTAGTAGTAAAAAATGAATATGATGATGCAGTATATTTTAAAGCATGTGCAAAATCAAATGAAATTTCTCAAATGGATGGTCGAAGTAAATCTATTAATGTAATAACAATTGCTAAATCTTCTGATACTAAAGATCAAGAAAGAATTGTTAATATTATGAATAGACAATCTAATATTAATACAATGCACTTAATACCTTTCACTGCATCTGGGGAAACAATTCATCTTATTTCTACCAATAAGCAAAATAATACATTACATTTGATATCAAAACAAAATGAAAATTTACCTGTTTTAGCAATTCCTAATCCAGAAACTAATGAAAATTATTCTAATCAAATTTCACAAATTAATAGTTCAATGATTATGGTTACAAATAATTCTCAACTTCCTAATGAAGGTTGTGAACAAAATGTAAATACAGAAACTATGATAATTAAACCTGTTTGCATACAAACTAATAATATTGAAAGTAAACAAACTGTAAATAAAGAAGGTAGTGATGATGAAAGTGAAGAATTAGTATGTGGTATTTGTGGAAATGATTTTGGTAATAAAAGTGTATTGATGGAACATGTGAAAATTCATATATAA
- Protein Sequence
- MDTNENEQYVTFSLDNVHEGIQDNISHEEICEPIDESALQESLTEATVGDINQSVRQPQVAVEILTENSEDGQSSIVYPIYIKKESSQQFTTGDESMAVEALRQLGGMYPYFEEKKVGCLNCTDMFTQVELAKHQTICLPNKHICNICREKFERKIDLSNHMVCHQVDRPHACRTCGNLFRSKANLQTHMIEIHQVERPHKCSVCGADFQRPSSLSNHMKIHSYIAGRALMQGQGSNVATNIETFKIDSDSRQPSILTTTLQTLQNFEIPQVQWAVQTYNYTNDQTSVDVLTNQSGKIDTLQEFTVLPTGEVAPFEYNSQNTINNSIGQYNLSLNSFNDSDTSIKVETTNMSNEIKRDYIEIDLQEDRRYICNQCGVSFARASSLTLHEKTHSKSDWGSPVECEYCDKQFRDSSFLASHQTICTKKLMQNNTELNTSNIKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQSELDEHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPTYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFSCPLCTILTQDRDELCAHIVKHSDQMIAEAKAKSNNIPKTKLQKKKSKISNKIQKSHSKLVDQVISTSDQNEALFSITEQVDSSTEIQNTYLVVKNEYDDAVYFKACAKSNEISQMDGRSKSINVITIAKSSDTKDQERIVNIMNRQSNINTMHLIPFTASGETIHLISTNKQNNTLHLISKQNENLPVLAIPNPETNENYSNQISQINSSMIMVTNNSQLPNEGCEQNVNTETMIIKPVCIQTNNIESKQTVNKEGSDDESEELVCGICGNDFGNKSVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00708095;
- 90% Identity
- -
- 80% Identity
- -