Basic Information

Gene Symbol
Trerf1
Assembly
GCA_018907195.1
Location
JACCHY010000001.1:19011138-19029154[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-08 0.00019 22.9 0.1 2 46 848 892 847 892 0.96

Sequence Information

Coding Sequence
ATGCATCGCAATGATGCGAACGTTCATGGTCTGCCTATTAATTTAGGACCTCGTAAGGATGCTGAAAATAAAAAAAGCGAAAAGAAAGAAGTTGTTGGACCTCCACTCCAAACAGCTTCAGTTAGTGTTCGAGCTCTCATAGAAGAAAAGATTATACAAAAACGAACGACTGCAACGGATGCCAACACATTGCAGCAACAGCGTGTAAACAACGCCGTGTCATTCGCTAATCAAACAACAGTAGTATCGATGGTAGATGGGCAATCGCAACAGCAACAACAACATATCGTTGGTAAAATGAATTTTGCGGTACCGGCACCACCGCCGCTTGCTGGTGGTGAAAAAATCCGTCGGATGTCCGATGGTGAACACTTTCGACAGCCCAACGTAACCATAACCGGTCATGTTACATCTGTACAAAAACAGTTGCAGGAAGCACAGACCCAAGCACAGGCCCAAGCTCTTGCCGATATGATACTCAAGGGTACAACAAAGATGGCAGTTAAGCGAGCTACTTCAGATCCGGGACAACGGGTTCAGCTTACTTATCAAGCAACTCCGATGTCGAACAACGTTCAATCTCAACAGCAACAGGTTAACTCGCAGCAGCAATCTCAACAGCAGCAGCAACCAGCGACGATCACTGAAAGCTTTACAATGACTGGTTATCCAGAAGACGGTGGTTACTTCAGCCCCAGTTTACAGGATGAAGTTTTTCAGCAGGTGGCCTCAGTGCCCGATAGCGTACTCCTACATGCCACACAATTGGATGCTATTCAATTTCAGGCATCAAGTTTGCTACAAGACCAAACGGCTAACGAGGCTTTACAAGAAATTAATCTCGAGGAACGTTTTTCTTCACAACATACAGTTAATCCAGATCTTCAGGCTCTCGTCAACTCACCTTTACCGGACTCCTTGGCAGAATTTAGTACCTATGGAGCTAATTATAACGACGGCTCACATACTTTACCAAGTCAATCACCATTACCATCACCTCTCACTCGACACGATAGTCCGAGTTTTACATATCCTACACCACCTGCAAGTCAAGAAGGATTACTCAGTGGTAGTTTACCTTTGCTGAGCCCTCAAGATGACAGTGACGCTGTACACTCGGTATCCTCACCTTTATCGGCTGCTTTCTACAGCACTAGTATGTCATCAGCGGCGGCTATCGAGGAAGCACTAAGCGAAGTTCTCCCGGACGAAGCTGACGCTGACGGTGCGGATCTCTATGCTACCGGTTGTCCAAACCCCCACTCACCACTACCAAGCCCCTTGTCGGCTACTCCAGCACCATCGCCTCTTTCATCTCTACCACCTTCCTCCGTTTCTTCGCCCGGACCTGGCAGTTTTACAACTACCAACTTCCCAATGTCACCACATCATACTCTCCAAAACCAAATGATGCCTAATTCAGAAGATCCCCTACTTTCATCAAGCCCGAAAGACTTTGGTGCCAATAGGCGAAAATTTGAATTTCAATCGTACAAACTCATCACCAACCAAAACCTCGTAGATTTTGGACTGGGTGACGGCAGTGTAGCAGGCATCGTTGTTGACAATAATGGAGAATTCAAATTGATACAGACGGCTGGATTGCAGAAAGCAAATGTTTATGTACAAGCTAATACAATGAGTCCAGCTCTGGCTTTTAGGAAGGAGATTTGTTTGGCTGGTTCAAAACTTGATCAGGGAAATATCAACGTCAATCTCAATATGGTTAATGATCAGGGAATGAATATACAAAATCATGTTTATCAGCAAACGCAAATGCATCAGCCCAACTTACAGCAGGCCATTAATCCAGCGAAATTCCTGATCCATACAAACCAGACGATGAAGCCCAGTCTTAAGCATAAGGCGCCTAATAACTTGCCTATACCAATTGAGCAAATTAAAGAAGAAGAGTTTCCAGACGAGGATCTATTCCTCAGTCCAAGTAACGTACCGATAGCTAACTTGGGTAGTCCGGTACGTCATTATAAAAAACGACCGCGTCTCGATGTACCGTCGCATGATAAGGATTCATATCTGTATCCATCGCGACTACGTCGGGCGTGTGATCGTCATTGGGACAGTAGTTATACGCCACCACCGATTCTGGATCCATCCAGGTCTGGCTCTGGACTTTATGCTCGTCTGCACCAAAGCGAGAGAGATTCTACGGATTTTAGTTCGGATGACTCTCAAGGAAACGATGGACCACCACCAAGAATCAATATAGGTACACGATACCAAGCGACGATACCTCAATTACTGGAAGCTGACGGTGATAGACTTGCTGCAGAACCTGAAATGGACCATCTCTTATGGGATCCAGGCATAGACAGTGCTCTCACGGAGACAGAACTGGAAATGTATCTTCAATTTGCCTGCTGTGCTGCAGTCCCAGGTGGAGGGAGAAATAAGGAATATGCTCTTCACATGCTGCATATGTGCATGGGAAATATTCGAGAAGCGATGTTAAAACTGATGCGACCAACTCCAGCGGTAACGTCCGATCATCCATTACGCAGCTACGAATGTCAGGAATCCGACCGTTGGACATCCCACGAAATGGATTCCTTTTATCAGAACCTACTGAAGTACAACAAGGACTTCACCGCAATAGCGCGTGATATTGGGAGTAAAAACACGAGACAGTGCGTTCAGTTCTATTACCTTTGGAAACGACTATGTCCCGACGAATACAAGAGGCTACGACTACGTTACGGCAAAGCCAAAATCAAGCCTGAGTACGGGAGGGATTGTAAGGACACAAAGGAGCTATGCGATGCTATCGCTGCGGTTACGGAATTAGACTTCAGTGAAGGAAAATCCATTCTTCATAGAACTCTGATGCAGACCACCAATGAAAGGGAAAACTCTGCCACTCTAACAACTAGCGAAGGAGAATTGCGACTGTATGCTTACGATTGTCAAGATAGCTTTAGCGGGAGCGTAACGGTAACGATGGGTGGGAGTGCCCAAATCGCCCGAGCCCTCAGCTGTACCGGCAATGCCGGTAGCGCTACCGGTTATGCCACAGTCGAGCACACCAACTCACAAACTCACACTAGTACCGAGCAACAACTACCCGCGCCCACCCCACTTCATTACCCCTGCAAGATTTGCGGGAAAGTATTCAACAAAGTGAAAAGCAGAAGTGCACACATGAAGTCTCATCGGCCAATGCCCTCGTCCGATTCAATGGGACAGGAATCTAGGAAGTTGCATCAGCAGCAACACCCACTCCAAAATAGTATTCAGCAGATTCAATCAAATCAGCATCCGATTCAACCGAGTAGCGATCAAATACAGTATCAGCAACAAACTCATGTATTTAACCAAGCTCAAGACTATCATCGGCATCAGCAACAACATCAGCGTCAAATTTCTCCGACGAATTGTGACGTTCAAACGAGCCACGTATGGCACAATCCACCAAGGCTTCGACCACCATAG
Protein Sequence
MHRNDANVHGLPINLGPRKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTATDANTLQQQRVNNAVSFANQTTVVSMVDGQSQQQQQHIVGKMNFAVPAPPPLAGGEKIRRMSDGEHFRQPNVTITGHVTSVQKQLQEAQTQAQAQALADMILKGTTKMAVKRATSDPGQRVQLTYQATPMSNNVQSQQQQVNSQQQSQQQQQPATITESFTMTGYPEDGGYFSPSLQDEVFQQVASVPDSVLLHATQLDAIQFQASSLLQDQTANEALQEINLEERFSSQHTVNPDLQALVNSPLPDSLAEFSTYGANYNDGSHTLPSQSPLPSPLTRHDSPSFTYPTPPASQEGLLSGSLPLLSPQDDSDAVHSVSSPLSAAFYSTSMSSAAAIEEALSEVLPDEADADGADLYATGCPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPGSFTTTNFPMSPHHTLQNQMMPNSEDPLLSSSPKDFGANRRKFEFQSYKLITNQNLVDFGLGDGSVAGIVVDNNGEFKLIQTAGLQKANVYVQANTMSPALAFRKEICLAGSKLDQGNINVNLNMVNDQGMNIQNHVYQQTQMHQPNLQQAINPAKFLIHTNQTMKPSLKHKAPNNLPIPIEQIKEEEFPDEDLFLSPSNVPIANLGSPVRHYKKRPRLDVPSHDKDSYLYPSRLRRACDRHWDSSYTPPPILDPSRSGSGLYARLHQSERDSTDFSSDDSQGNDGPPPRINIGTRYQATIPQLLEADGDRLAAEPEMDHLLWDPGIDSALTETELEMYLQFACCAAVPGGGRNKEYALHMLHMCMGNIREAMLKLMRPTPAVTSDHPLRSYECQESDRWTSHEMDSFYQNLLKYNKDFTAIARDIGSKNTRQCVQFYYLWKRLCPDEYKRLRLRYGKAKIKPEYGRDCKDTKELCDAIAAVTELDFSEGKSILHRTLMQTTNERENSATLTTSEGELRLYAYDCQDSFSGSVTVTMGGSAQIARALSCTGNAGSATGYATVEHTNSQTHTSTEQQLPAPTPLHYPCKICGKVFNKVKSRSAHMKSHRPMPSSDSMGQESRKLHQQQHPLQNSIQQIQSNQHPIQPSSDQIQYQQQTHVFNQAQDYHRHQQQHQRQISPTNCDVQTSHVWHNPPRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01216720;
90% Identity
iTF_01216720;
80% Identity
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