Basic Information

Gene Symbol
ncor1
Assembly
GCA_018907195.1
Location
JACCHY010000009.1:6211097-6226490[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.6 9.9e+03 -1.8 0.1 31 39 322 331 319 332 0.80
2 2 1.7e-08 4.7e-05 24.8 0.0 3 43 494 534 493 537 0.96

Sequence Information

Coding Sequence
ATGAACATCACGGTACCCCCGGTGGTGCCCGTACCCGCGGGTCTCCGCTTCGTCCATCCCTATCTGCCCCCGCCGCCGACCCACCCGCACCCATCGGCGCAGTCGGGCGCGTCGGTGGCGCAGGTCGCTTCGTCCAACTCGGCCTCGCCCGTCTCCGCGTCCTCCGGCCCGTCCTCCATCATCCAGCAGCAGGTCAGCAGGCAGCATCCGCCCTCGGCCCCGTCGCCCGCCTCGGTCGCATCCAACGCCGCCGCCGCTTACACGAGGGACGTATATCGCAATGCCAGCCCTAACGTTAACGAGCGAGTGGCGATAAGCGTGAGCAGCAGCCCAGTCTCGTCGCAGGTCGTCGGCGTCGGCAGCGATTACGTGGTGAGCGGTCGAGGCGAGCGACCTCGGATATCCCTGCTCCCGGCGCCGGCCTCCATCGCACCCGCGGCCTCGCCGACCGCGCCCACGGATTACCACGCCGCAGCCGCGCGCAACAATCGAAGCGGAGGCGGGGCCGGAGGTGGTGGACCTGCCATCCTGGCGATGCAACCGCAGGACTATCGTCCGAATACGAGGCCAACCGCGGGTGTGTACACGCCACAAACGGAAGCCATTTCGCCAACCCTTCCAGAGCCTAATACACAAGAGGATGCGGCATTCAGGAGTACCAAAGACGATCTCCTTCAGCAGATCGCCAAAGTCGATCGGGAAATTGCCAAAAGGGAGTCTCAGATTAGTAAGCTTCGGAAAAAACTTAAGGAGTTGGAAGAAGTTGCTAGCAAACCTTTGGAACCACCCGGTACTAAGCGACCTGTCGAAGAGGCGTCTCTGCAACCCAAACATCAGTCGCTTGTACAAAAAATTTATGCTGAAAATAGGAAAAAAGCGGAGGAGGCGCACAGGCTATTGGAGAAACTAGGCCCGAAGGTAAAACTGCCGCTCTACAACCAGCCTTCGGACACGAGCGTCTACCAGGAGAACCGCACGAGGCATCAGTGTATGAAAGCCCGCCTCGTGGCCAGACTGCGAAAGGAGCACGCGGAGCGTGCGTCCCTGCATCGGCAGCAATCTCAGACGTACGCGATACTCGTGCAGGAGTGGCACCGCAAGGTAGAGAAGCTGGAGGCGACGCAGAAACGCAAGACCAAGGAGGCCAAGAACCGGGAGTTTTTCGAGAAAGTCTTCCCAGAGCTGCGGAAGCAGCGAGAGGATAAGGAACGCTTTAATAGGGTCGGCGCGCGCATTAAAAGCGAGGCCGATCTCGAAGAAATTATGGATGGTCTGCAGGAGCAGGAGGAAGAGTTGTCGACCGAGTTAAAAAATGCGTTGAAAACTCATCAGATGGAGGATAAGAAGATGCGCTCGTACGCTGTGATCCCGCCGCTGTTGCTGGATGCGAAGCAACGGAAAATCGCATTTCAGAATCGGAACGGTTTGCTGCAGCCGGAGGAACTCGAGGCGTTGCACAGCGAGAGGAAACTCATCAACGTCTGGAGCACGACGGAGCACGATATGTTTAAGGAGAAGTACCTACAGCATCCCAAGAACTTCGGAGCGATCGCCCAATCGTTCGAGCACAAGTCCGTGGCGGACTGCGTGCATCATTACTACCTCACTAAGAAAGCGGAGAATTATAAGCAGCTACTGCGAAAGTCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAACAATAAGGTAAATAATAGTAACTCCACTATCGGACCTATAGATATATTAACGACGGGAGTCACGACGAGGCTGCAGCGTGAGCAGCAACAGAAAACCCAAGAGAATCCTCAGAGTAGCTCGGCGTCCGCGAGTAGTAGTAGCAACGCGACGACGACGACGACGACGTCGACCTCCTCGGCGACTACCTCCTCTTCGTCGTCGACCTCGGTCACGAGCTCGATCGGCACGACGTCGTCCTCGTCCGGAACCGCCGTCGCCGCAACATCCGTCCCGAGTATCAGCGAGACGACTACGACGTCGAGCGTACTCACGACGACGTCAATGTCGTCGACCAGCGCCAAGGACGCCCGCGAGGCAAATAAGGAAAATAAGGAGATTAAGACGGAGTCGAAAGACTCGCTACTTCTTAAGGATATCAAAGAGGAATCGCAATCGAGTTCCGAGACACTCTCTAGCAGGGAAATCAAGGTCGAGGGTAAAGGCGCCTTGTCCTCGTCGTCGAACACGAGCGTAACGAATACCAACAACGCGAACAGTAATCTCCAGCTCGAGTTGCAGCAACAGCCGCAAAAGGATAAAAAGAAAAATGCGAACATCACGGGAGGCTCGACTGTCATCAGCAGGTCGAAAGATAAGAAAAAGGAGAACCACGCGACTCCCATGGAGACTAGCGACGAAGAGGCTCAAGCTATGGACGCAATGGTACTTGCACGCATCGCTCTCGAATCAATGGTCGAATCAATGCTCGAATCAGTGGTCGAATCAATTCTCGAATCAATGATCGAATCAATGCTCGAACGCAATTCACTTTTTCACGCACACTCGCAACTCGTTTTATCACCGGATCGGGTTATTGTTTACTTTCGAAAACCATTCGATTAA
Protein Sequence
MNITVPPVVPVPAGLRFVHPYLPPPPTHPHPSAQSGASVAQVASSNSASPVSASSGPSSIIQQQVSRQHPPSAPSPASVASNAAAAYTRDVYRNASPNVNERVAISVSSSPVSSQVVGVGSDYVVSGRGERPRISLLPAPASIAPAASPTAPTDYHAAAARNNRSGGGAGGGGPAILAMQPQDYRPNTRPTAGVYTPQTEAISPTLPEPNTQEDAAFRSTKDDLLQQIAKVDREIAKRESQISKLRKKLKELEEVASKPLEPPGTKRPVEEASLQPKHQSLVQKIYAENRKKAEEAHRLLEKLGPKVKLPLYNQPSDTSVYQENRTRHQCMKARLVARLRKEHAERASLHRQQSQTYAILVQEWHRKVEKLEATQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDGLQEQEEELSTELKNALKTHQMEDKKMRSYAVIPPLLLDAKQRKIAFQNRNGLLQPEELEALHSERKLINVWSTTEHDMFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQSSSASASSSSNATTTTTTSTSSATTSSSSSTSVTSSIGTTSSSSGTAVAATSVPSISETTTTSSVLTTTSMSSTSAKDAREANKENKEIKTESKDSLLLKDIKEESQSSSETLSSREIKVEGKGALSSSSNTSVTNTNNANSNLQLELQQQPQKDKKKNANITGGSTVISRSKDKKKENHATPMETSDEEAQAMDAMVLARIALESMVESMLESVVESILESMIESMLERNSLFHAHSQLVLSPDRVIVYFRKPFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01379941;
90% Identity
-
80% Identity
-