Basic Information

Gene Symbol
JARID2
Assembly
GCA_018907195.1
Location
JACCHY010000011.1:5889105-5902555[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.4e-22 1.7e-18 68.2 0.0 6 89 1421 1502 1417 1502 0.94

Sequence Information

Coding Sequence
ATGGTTTTAAGTCGAAATGATAAGAGAAAAAGGAAAGAAGGAGATCTCGTGGATCTCATGGATCCACTGGCAGAACCATCGAAAAGAACTAAAATACACGCACAAAGAAAGTTTGCTCAAGGAGCAGCTACTCCTATATTTAGTCCTACGAGTACACCTATCAAAGAAAAGGAAAAAGTAAAACCTACCATATTCAGAGAATTAATAACTCAGAGAAGACCAAATACAGAAGACTTTTTAACGTTTCTTTGTTTTCGAGGCACATCGATACTACCATCGAGTCTTAACTTTTTTAGCGCTACGTCTAAAAGGGATAGGCTACAGAATGCTTCTAAGCCATCGCTGTCCTCCGGTCTCTTCACCAAATCGAACGGGACCTGTGGGAGACCGACTCCAACTACAAAAGCCGAAGAGAATGTCGCTTCCATCGTTCTTTCGAAATCGGCCTCGGTCAGGGAGAAACCTAGCAGTGTCCTAAAAAAGCAAACACCCTCAGCCATACCGAAGACGATTAAACTCAAGACTACAAGCTCGGCGATCCAGGCCCTTAAGAAAAAATATCAAGAGCAAAGACTCGCGAAGCAGCGCCTCAACAAGTTCAAGCCCACGTACATGAAAACACGATCGTGCGTAGAGGCGATCGAGCGAGTGCCTGACAAATCGCTGTCCCCTAAGATAACGATAGCCTCCAAGAAGATTCTCTCCCGAATGGAAAACAAGAGGCACGGACTCAGGAGCACGGGTCCAGCCGACAGCGAGGAGAACATCATCTTGCCCCTCAAATCCCTAAAGAAGCAGATACCCGTGAAACTGAAAAGGAAGAACGCGATCGTACGAGAAGACACGTCGAGCCTCGACTCGATACCGGTGAGAAACGGACCGAGAAAAATTGCTACCAAGTTGTCGACTGTCAAGCCCATTCAAAAGAAGCTCTTCGGCAAAAGTAAAAAGTTCGAGGCGAGGCGCGTTACGCGTTCGCGCACCGATGTCCCGGTCAACGTCTCGCCGACTCCCGCACCAGTGATGTCCCGACGCCCGACAAGGAAGACGAAGGAGGCCGCGGCGGTCTACATGGAAATATTGGGAAGGAAGCTCGTCAGTCCGGAACTCGAGAACGAAGACAACATGTCACTGGATAGTTTCCCGGAACTGCCCAATGCAAGGAAGATCGCTCAAACGGAAAATGAAATTAAAGCCAAGGTCAAATCGTTGAAGGCCGCCGCTGCAAATATTAACGCTAACGCCGATACGACTAACGCGAAAGAGAAGGAGAAGGAGAAGAAAGTAGCGGGTGGTACCAGTACTTTACAAAGCGGCAATGTCAAACCCGTTAAAAGAAAACTAGTAAAACCAATGTTACCTCTAAAGAACAAGCGATTGGTAAAGGTACAAAGATATCGCGAAGTGAACAGCGACGAGGAGTCGGTGAGTTCGAAGGATACGAGCAAGGGAGTTAAAACATCTATGGTTTCGAAACGATCGGTTCCGTCTAACCTAGCGAAAGAAAAGAAGTTCGACAATCGTAGTTTGAGATCCAGCCGAAGTCTAACCGCGAGTAGACAAAGTTTTTCAAAATTGAAGGATGCACAGCCAACGATTGTCATTGAATCCGTAAAAACGTTGAAAAATGCGGAATCTCAGGTCGTCGCGAAGAGTAACAAAGAGAATAGCGGTACGAAGGAGGGCTTAAGAGAAAAGTCGACGATAGGACTTAAACGCAAGCGTGACTCTACCGCCAATGATAAAGAGAAGGATAAAGAGAATCCTTCGAAGCAGAAATTTGAAGCTACGAAGAACAAGGGGAAATCGACCAATGCTGCGATCGACTCCGAGGAAGAGAGTCTGGGCGCGATCTTGAATAAGATGAAACGGAAGAAGGAGACCGAGAAAGAGGAAAGCGTCAACGAAGCATCCGCGAAAAAATCGTCTGAATCGAAATCATCGAGCGCTGTCATTAAATCTACTACGGTAGAGATGCTAAGAAGTCAAGCGGTGACTGATGGAACGACGACGAAAATTTCCGACGATGAAGAGTCCTTCCGCGGTTTCACAAAGAAAGCTATCTCCAAAGTGGCCAACACGTGTCAATCCCACGTGAAAACGAACAAACTAATGGAAGAGATCGATAGTAAAGCGAACGTATTCAAGACGCACGGAATCGCGCTGAACGCGTCCCCCGCCGTGAAAGATACGAAGAAGGTGGACATCAAGCTCTCGACGACAACCTTCCCCTGCATTAAACCTATCGGGATGAGCAATACCGTGGCCAATGCCTCCGTCAAGCAGGAACCAGACTTTGAAGATTTGAAGATCGAGCAAACGAGTAAAGAGACGAATAAACATTCAAAGATATCTTGCACCTCGACGGTACCGCTCAACATCATAGATATACCGAATGCGTTGGGCCACGGACGCAAGGAACGGGTAAACATGTCCACCGAACAAATCGAAAAGTGGCTCAACGAAAGCTCCCTTGCCAAGGAGGAGAGCAAAGTCGAGATGGAGAGCGTTGCGAACTTCAAGTACGACCTGGGGCTGGACAAGCCCAAGATCGAACCGCCGGTGACGACGACTCCGAGCCATCTCTCGATATCACCCAAGATCCAGCATCTCGTGAGGCCGGTGAACGTCACCTTGTCCAAGTTGTCGGATCGATTGAAGAAGACCTCGAGTTCGATTTGCGCGAATAGAACGCCTTCGGTCTTCCTCGCGAGCAGTCAGATATCCCCGGTGAAGCCGCAGACAACCGTAGTGATCAAGCCTAAGCCTTCGGGGGACGGCGCCGTCAAGGACAAACAGGACCCTCCGAACACACCGCCTAGCAGGAAGATGAGCAAGGATTCCTCTTGCGGGGATGACGCCGTGGACAACGACGCGATATCCAAGTCGGATGGGAATTCCATAGGCGACTCGTCGGAAAGGAAATCCTCGAGCAGTCCCGAAAAGAAGGTTTTTTTTCATCAGCGAAAACCTTTCCTGCCAAAGGTAAAAGAGCGAAAGGTTACCAGCAGCGCTTCGGCCTTTTCGCCCGAGAATGAAAGTAGCGTGTACGCGTTCGAGAGCGAAGCCGAGGCACCGGTTAGTACGCCCTTTCGTAGGAAGGCAAAAGAAGCTACCCTCAAAGACAATCACGGGACGATCGAAAAGAGTAAGTCGGCAAATGACGAAGCGAAGGGTAAAAGTGGCGAGGAAACAAAAGTGACCGAGTCTTTAAACTCGCCGGAGGAAGCTCGGAAGGACGAAGAAAAGTCTCCTCCGCTGTTAGAAAAAACAACTCCAAAAAATTTCGAGCTTCCGAAAAACTTCGCAGATTTAACAAATATACAGGTGTTACCACTAGACAAACTAACAACAAGTTGGAGCAGTGTAAATTGTAGTGCTTCGATAGCGGTGCAGGTGAACCTAGAGGACCAGAAACAACAACAAAAGCAGCATCAAAAAGAACATTCGATAACAGCGGAGAGCAATAATGAGTCTACTCAGAAAAGTACCGAGATCTCAACCCAAACGGATACTAACACGGACAACGACGACGACAACGACAGCGGTCAGCTCTTCTACATACCCCTTCAAGCGGTAACGCGCAATACCTCGGCCCAGGGCGGTCAGCAGCTCATACAGGGTGTAGCCGTGAAACTGGGCACGGAGGGACCAACCGGCCCCAACCAACGAGTCCTCTTGAAGGCTAAGCTCGTGACGAAACCTCCGATATCGGTGGCAAGATGCCCTCCCATAGGAACCGTGCAACCGACTGCTAGACTACCTCAAAATTCAAGCGCCGAACAATTTGACGTGCCGTCAACTTCGACGCACGATTCTTCGGACATGACTTACAAACACCAAACCCCGGAGAAAAAAGGAACCAAGGCTGCAAGCGTAGCATCGAAAATTCAAAAATCACCAAAAAGCAGAGAAAGAAAAGCTTCGTTGGATATGGCCAAAGGAGGGAAAAAAGTAAAAATAAAAAATCTTAATATTTATTCGCCTATAAATAAGACAACATTTCCAAAAACGAGAGAATTACACGAAGAGGCTCGTCTCGTAGAAGCTCCGACTTTTCGTCCTTCGGAAAAGGATTTTCAGGATCCGCTCGAGTACATTGAAAAAATACGTTCAGTTGCTGAGCAATTTGGTATTTGTAAAGTAATACCCCCATCAAATTTCAAGCCTGAATGTAAAGTTTCAGATGATATGCGATTCACAGCTTACAATCATTACGTCCATCGAATGCTTCATCGTTGGGGTCCGAATGTAAGAGAAATGATGGCCATAAAAAAATATTTAGCTACACAGAGTATAACGTTAACGCAACCACCATGGGTTGGTGGCATGGAAGTTGATCTCCCACACTTATATCAAACTGTACAAACTTTAGGAGGCTTAAAAGAAGTGATCGAAAAGAAAAAGTGGCAAAAAGTGGCGGACGGCATGAAAATACCCAGATCAGCTCAAGATCGCGTTACTAAATTGGATGACATTTATTGCAAATACTTACTTCCTTATGATACGTTGTCCCAAGATGAAAGAGATAAATTATTTAAAGATGTAGAAGATGATTGGACGAAAAGAGAAAAGGATGAAAGACAGGAAACACAGTCTAATGAGAATGAGGATGAGGATGAAGAAGATAGCGTGGAAGAAATAGAAGAATGCATCGTGAAAGGTCGCAATATGCCATTGAACGCGTTTTATAGAATCGCTCGTAATACGCAGCGGATGTGGTTCGGAGAGACGCAGCGTTCGACTAGCGAAACGGATGGTCCTTCGGCCGAGGAAGTCGAGACTGCGTTTTGGCGGCACGTAGTCGAGAAAAAGCGCCACGTTTGCGTACACGCAGCGAGCATCGACTCCAGCGGTCGCGGCTTTGGATTTTCCGTAGCCAAGAACAGTCCCTTCGCTCGTCACGCTTGGAACCTCAAGGTTCTTACGAACAACGCTGGATCGGTTCTCAGAGCCCTTGGACCACAAATGGGTGTGACCGTACCGACGCTGCACGTTGGGATGTTGTTCAGCGCCTGCTGTTGGTATCGCGACCCTCACGGGCTCCCGTGGATCGAGTACCTTCACACGGGGGCGAAAAAGATCTGGTACGGGATTCCCGACGAGCAGAACGTCGCGTTTCGGAAAGCTCTGACAACGATGTTCCCGCGTTACTGCAAGAACAAGACAATCTGGCTGCCCTCGGACACGGCGATGGTGCCGCCCGACATGCTCGTGAGTAACGGAGTGCCGCTCTGCCAAACTGTGCAGGAACCCGGTCAGTTTATCGTTGTCTTCCCAAAGGCCTTTACCTCGAGCATCTGCACGGGCTACGTCGTCTCCGAGAGCGTCTACTTTGCGCATCAGTCGTGGCTCGAGACTGCCGAACAGGTCTTTCGAGATATTCACGACAGTTGCGAACCTTCGATATTTTCATTTGAAAGATTGTTATTTAGCATTATTAATGATTCCAGATCTCATATCGATGTACTTAAGCAGATTTTACCAAGCGTTATCAAAATTTGTGATAAGGAAATTAAAAATCGCCAAAAATTAAAAGAGTTAGGTCTTATAAATACTGAAAAACTGCCATTGCCAGAAACTGAAAAGAAACGAAAAGGTAAAAAAGTTAAAAAAGAAGAAGGTGATTACGAATGTGATACTTGTCGAGCAAATTTATTTGTTTCGATTGTAAGTAATCCTACGGATGAAAGTATTTTTTGCTTAACTCATGCCATACAATATATACAAAAAAAGAAACAGGTCCTGAAAAATTGTACACTAATGTATACGTACAGTGAGAGTGAATTAAACGATCTTATTCACAAATTAAAGGACAGGATCGAAGCCAAATCTAAAAAGACTAATCAAATGAAACAAGCTAAATAA
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLAEPSKRTKIHAQRKFAQGAATPIFSPTSTPIKEKEKVKPTIFRELITQRRPNTEDFLTFLCFRGTSILPSSLNFFSATSKRDRLQNASKPSLSSGLFTKSNGTCGRPTPTTKAEENVASIVLSKSASVREKPSSVLKKQTPSAIPKTIKLKTTSSAIQALKKKYQEQRLAKQRLNKFKPTYMKTRSCVEAIERVPDKSLSPKITIASKKILSRMENKRHGLRSTGPADSEENIILPLKSLKKQIPVKLKRKNAIVREDTSSLDSIPVRNGPRKIATKLSTVKPIQKKLFGKSKKFEARRVTRSRTDVPVNVSPTPAPVMSRRPTRKTKEAAAVYMEILGRKLVSPELENEDNMSLDSFPELPNARKIAQTENEIKAKVKSLKAAAANINANADTTNAKEKEKEKKVAGGTSTLQSGNVKPVKRKLVKPMLPLKNKRLVKVQRYREVNSDEESVSSKDTSKGVKTSMVSKRSVPSNLAKEKKFDNRSLRSSRSLTASRQSFSKLKDAQPTIVIESVKTLKNAESQVVAKSNKENSGTKEGLREKSTIGLKRKRDSTANDKEKDKENPSKQKFEATKNKGKSTNAAIDSEEESLGAILNKMKRKKETEKEESVNEASAKKSSESKSSSAVIKSTTVEMLRSQAVTDGTTTKISDDEESFRGFTKKAISKVANTCQSHVKTNKLMEEIDSKANVFKTHGIALNASPAVKDTKKVDIKLSTTTFPCIKPIGMSNTVANASVKQEPDFEDLKIEQTSKETNKHSKISCTSTVPLNIIDIPNALGHGRKERVNMSTEQIEKWLNESSLAKEESKVEMESVANFKYDLGLDKPKIEPPVTTTPSHLSISPKIQHLVRPVNVTLSKLSDRLKKTSSSICANRTPSVFLASSQISPVKPQTTVVIKPKPSGDGAVKDKQDPPNTPPSRKMSKDSSCGDDAVDNDAISKSDGNSIGDSSERKSSSSPEKKVFFHQRKPFLPKVKERKVTSSASAFSPENESSVYAFESEAEAPVSTPFRRKAKEATLKDNHGTIEKSKSANDEAKGKSGEETKVTESLNSPEEARKDEEKSPPLLEKTTPKNFELPKNFADLTNIQVLPLDKLTTSWSSVNCSASIAVQVNLEDQKQQQKQHQKEHSITAESNNESTQKSTEISTQTDTNTDNDDDNDSGQLFYIPLQAVTRNTSAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARLPQNSSAEQFDVPSTSTHDSSDMTYKHQTPEKKGTKAASVASKIQKSPKSRERKASLDMAKGGKKVKIKNLNIYSPINKTTFPKTRELHEEARLVEAPTFRPSEKDFQDPLEYIEKIRSVAEQFGICKVIPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVREMMAIKKYLATQSITLTQPPWVGGMEVDLPHLYQTVQTLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKDVEDDWTKREKDERQETQSNENEDEDEEDSVEEIEECIVKGRNMPLNAFYRIARNTQRMWFGETQRSTSETDGPSAEEVETAFWRHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFARHAWNLKVLTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEQNVAFRKALTTMFPRYCKNKTIWLPSDTAMVPPDMLVSNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAHQSWLETAEQVFRDIHDSCEPSIFSFERLLFSIINDSRSHIDVLKQILPSVIKICDKEIKNRQKLKELGLINTEKLPLPETEKKRKGKKVKKEEGDYECDTCRANLFVSIVSNPTDESIFCLTHAIQYIQKKKQVLKNCTLMYTYSESELNDLIHKLKDRIEAKSKKTNQMKQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01523825;
90% Identity
-
80% Identity
-