Dnox005305.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:327990-333594[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0076 0.52 10.4 0.1 3 22 168 187 166 187 0.94 2 13 0.00017 0.012 15.5 1.2 2 21 287 306 286 307 0.94 3 13 0.00014 0.0093 15.9 3.8 1 23 314 336 314 336 0.95 4 13 0.00036 0.025 14.5 5.1 2 23 339 360 338 360 0.97 5 13 0.46 32 4.7 2.3 1 16 393 408 393 416 0.82 6 13 6.7e-05 0.0046 16.8 2.1 1 23 447 469 447 469 0.94 7 13 0.00094 0.065 13.2 5.0 1 23 475 497 475 497 0.97 8 13 0.00045 0.031 14.2 0.3 1 21 503 523 503 523 0.96 9 13 8.5e-05 0.0059 16.5 0.4 1 23 528 550 528 550 0.97 10 13 3.7e-05 0.0026 17.6 3.7 1 23 581 603 581 603 0.99 11 13 0.015 1.1 9.4 2.4 2 21 614 633 613 634 0.91 12 13 0.074 5.1 7.3 2.8 1 23 643 665 643 665 0.96 13 13 0.12 8 6.6 0.5 1 23 689 712 689 712 0.94
Sequence Information
- Coding Sequence
- ATGTTGAGTTCTACTAATAACAACATCGATACTGAAAAGTGGCAAGAAATTTTATTGGATGAAATCCAATCTAACCATGAAAATTGTTCAGACAATGAATTACCTCTTTCATCAATAGGAACAACTAATAACATTGATGCCAAAAAATGGCAAGATgttatagtgaataatattcaTTCTAACCTGAAAAAtaactCAAAAAATAAGTTGCCTCTTTCACCAATATCCATGATTAATGACCATACAAGTGTAAAACaagatattaatttgtatgatattcaATCGGACATTGAAAAttcCTCTGATAATGAGTTACCTCTTTCATCAATTGCAAATGTATTGCTTCCAATTGATACCTGTAAAGTCGAAAAAAGTAAAGTTGTAACATCTGAGTCAATTGGTTTCCAATTCAAGATTGACGTTGACCATAATACATCTGACTCAAGTAAAATATCCATCAAAGAACCAAGTAAAATAGATAAACCAATTAAGAAGTATGGGTGTGATATTTGTGGGAAAATATTCTTTAGACGTTTTGagattattgaacattttagaaCTAGTTTATGCTTTCCGGAAAGTCCTTTTGATCTTGAACACAACAGCCCtacttattatttgtacaaCAATTCTGAAAATTCAATAGCATATTGCaacaatataagtaatttaaaaactaatcataCACAAGATATGAACGATAAATGCAGAATTTGTCAAGATGTAATTAGAAAtgacaattttatcaaaaaacatcaaatattgcatactaaaaaaaataacttatgtaATGTATGTTCAGTTTTAAATAGTATTGCATGCGGAAATAATCAGCACCTTAAAGAAAAGTATACATGGAAATGTAAAACATGTGGGCAGTCATTTACTAAATTGTCTGTTTTAAAAACTCACATATgcatttttccaaaaaataaactCTTCAACTGTAATAAATGTCATAAAtcctttaaaaaattgaatgctCTGGAAAAACATAAAGTTATTCATACACTTCATTGCAACATATGTTATAAGCAATTCTTTAAACAGTCATCTTTAAAAGATCATAAAAGAACACACGATTTAAGAAGTATCAACCAATACAATATTCGTTTGAAGTTCTTAAATTATAGTGCATTAAGGCATACAAAAGAAGTCTGCACATcatctaaaaaatatgaatgttcAAGATGTTCAAGAGTATTTTATAAACGTTCAGAAATAGTAtgtcatatttttgaaaatcaccAAGAAGATTATTCCAAATATAGTTGTGACGAATGTACAAATATATGTGATTCTTCGCGGGACTATATCTTACGTTTAGGAAAAAACCATTTCAAATGTGATGTATGTCCCCAATCATTCACTACATCTCATAGACTACAACAACATTATGGATGGCATCTtggtatcaataattttaaatgtgaattCTGTCCTAagacattttcaaaatgttctcTTTATTTATCCCATGAAAAAAATCATACTGGAGAAAGACCATTTAGGTGTAATTTTTGTGGGAAATGGTTTCCAGagtcatcaaatttaaatattcatttaaaacctTACAAGCTATTTGCATGTGATATTTGTCAAAAACCTTATACACAGATGTCCTCATTATTACTTCATAAAAGATTACATTCAAAAGAAAAATTCCTTGAAAATAAGAGCTGTCATCAACTATCAACCATGGAAGTACGTACAAGACGACAATGTAGTAGAAGAAAGCAGTTTAAATGCAATATGTGTACCAAATTATTCTATCATTCATGGTCATTAAATGCGCATCTAAAAACACATCAAAATAACAAGAATAGATATAAATCATCTACATGTACTTGctgtttaaaagtatttgataaTCTTTCTTCACTTAAAAGACATTACAGGTACATgcagcaaaaaaataataaactcttTGACTGTGATATCTGTAAAATTTCTTTTATGTGTTCAACTAGTCTTAATGAACATAGAAAAAATCACGCTCAGTTTGAAAAAAACACTCCTCTAAACTATAATGTCAACAATGATATAAATACAGTAAATGAAGAATATAAATGTGATCTTTGtatgaaaagttttttaaaCCAAGCACAGATATTTTCTCATATTCTAGAAACTCATTATTAG
- Protein Sequence
- MLSSTNNNIDTEKWQEILLDEIQSNHENCSDNELPLSSIGTTNNIDAKKWQDVIVNNIHSNLKNNSKNKLPLSPISMINDHTSVKQDINLYDIQSDIENSSDNELPLSSIANVLLPIDTCKVEKSKVVTSESIGFQFKIDVDHNTSDSSKISIKEPSKIDKPIKKYGCDICGKIFFRRFEIIEHFRTSLCFPESPFDLEHNSPTYYLYNNSENSIAYCNNISNLKTNHTQDMNDKCRICQDVIRNDNFIKKHQILHTKKNNLCNVCSVLNSIACGNNQHLKEKYTWKCKTCGQSFTKLSVLKTHICIFPKNKLFNCNKCHKSFKKLNALEKHKVIHTLHCNICYKQFFKQSSLKDHKRTHDLRSINQYNIRLKFLNYSALRHTKEVCTSSKKYECSRCSRVFYKRSEIVCHIFENHQEDYSKYSCDECTNICDSSRDYILRLGKNHFKCDVCPQSFTTSHRLQQHYGWHLGINNFKCEFCPKTFSKCSLYLSHEKNHTGERPFRCNFCGKWFPESSNLNIHLKPYKLFACDICQKPYTQMSSLLLHKRLHSKEKFLENKSCHQLSTMEVRTRRQCSRRKQFKCNMCTKLFYHSWSLNAHLKTHQNNKNRYKSSTCTCCLKVFDNLSSLKRHYRYMQQKNNKLFDCDICKISFMCSTSLNEHRKNHAQFEKNTPLNYNVNNDINTVNEEYKCDLCMKSFLNQAQIFSHILETHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -