Dnox005520.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:127625-135629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.6e-05 0.0011 18.8 1.1 1 23 88 110 88 110 0.96 2 23 0.00013 0.0086 16.0 4.2 2 23 120 141 119 142 0.95 3 23 0.9 62 3.8 1.4 1 23 146 167 146 167 0.92 4 23 0.0067 0.46 10.5 2.8 1 23 196 218 196 218 0.98 5 23 0.71 49 4.2 8.4 1 20 250 269 250 281 0.94 6 23 0.32 22 5.2 0.0 2 20 285 303 284 305 0.91 7 23 0.00012 0.0086 16.0 3.9 1 23 310 332 310 332 0.98 8 23 0.052 3.6 7.7 1.4 1 23 696 718 692 718 0.88 9 23 4 2.7e+02 1.8 0.0 8 20 794 806 789 808 0.91 10 23 0.17 11 6.1 3.7 1 23 815 837 815 837 0.94 11 23 0.028 2 8.6 5.7 3 23 881 902 880 902 0.96 12 23 0.00043 0.03 14.3 1.1 2 23 955 976 954 976 0.96 13 23 0.0009 0.062 13.3 4.1 1 23 981 1003 981 1003 0.99 14 23 0.0047 0.32 11.0 0.7 1 23 1060 1082 1060 1082 0.96 15 23 0.003 0.2 11.6 1.9 1 23 1088 1110 1088 1110 0.97 16 23 0.0026 0.18 11.8 0.8 2 21 1146 1165 1145 1166 0.93 17 23 0.00015 0.01 15.7 2.6 1 23 1192 1215 1192 1215 0.96 18 23 0.00018 0.012 15.5 0.1 2 23 1260 1282 1259 1282 0.95 19 23 0.0006 0.041 13.8 3.8 2 23 1290 1312 1289 1312 0.97 20 23 0.0026 0.18 11.8 2.0 1 23 1344 1366 1344 1366 0.95 21 23 8.6e-05 0.0059 16.5 0.3 1 23 1371 1394 1371 1394 0.95 22 23 7.4e-05 0.0051 16.7 2.0 2 23 1424 1445 1423 1445 0.97 23 23 9.8e-05 0.0067 16.3 2.3 1 22 1451 1472 1451 1472 0.96
Sequence Information
- Coding Sequence
- attactCCAATGGAAGACTACATAAAAGTTGAAGTCACTGATGATTCTGATGCTGTTACCAGtcAATTATATGTTGAAAACACTAATGAAAATCCTGCATGGTATACAGTTGATGATAATCATGTATCTTTGGTATCTGAAAATGTTGAGAAAGTTATTAAGCTTGAAACTGATGTGTTGGATGATTGTATGTGGGAAAGTAGAATTGATATTGAAGATAATAATACTGACTTAAATGAAGAAAACACAAGtgacaaaatatttcattgtaatatttgtGGAAAAagctttgttttaaattacctTTTAAAAAATCACTTAGCAGAACAcaaaaaacatgtaaattataaaaataataaatgtaaatactgTGGAAAActgtttaagttaaaatttggtttGAACAGACACATTCAAAAACATCACAATCTCGTGTATAAATGTGGAATTTGTAaactttttattgataaatctaAGTTTGTTGAACACAAAAAAAGCCACGAAAATGATCAAACTAAATTTGATACTAttcctaatataaaattatgcaaattaaaTGGTGTTTGGAAAAGTAAAACAAatgaatttaaatgtaatatctgTTTCCAAAAATGCTACAGTGAAAAGAATTTGGTTGAACATGTGGAAACTCATGACAATTGTCAAACACAGTGTAAATATTGCTCAGATTATGTTTCAGTTTCTGAAATGAATAATCATTTGGAAGAAATACAtgacaaacatttatttaaatgtcagaagtgtaatcaaaaatttaaaaaacaacaacatttaAACTGTCATTTGATTCATTGCTTAAAGAGTTCTCAcaccaaatataataatgagaaaACTTGCTCTGCTTGTggaattgtttttaatagtacTCTATCATTGTTAAATCATACGATTATTGGTTGTAAACATTATACTTGTAAATATTGTGGACAATTTTTTAGTCAAAGGAATTGTTGGCTAAAACATATGGATGTTCACAAAAAAGTTGAACAAAGTGCAATGTTGAATGTAAATACTGAAACAAATTCTACAATTGGAGAATCTAATCAAACTGAGgatgtaaatgatttttttcatagttCAAATAGAAGACTATTTTACTGTGATGTTGCGGAAAGAAATATTTCAGATCATATCAGATTAGTGAATACCAATCCAACAATAGTAGCAACTGCTTCACACACCTATATCCCGAACAATGACATAATTTCAAATSCAGGACAAACTGAAATCTTATTGAATTCCTCGGAAAGAAATATTTCTGATCAAACAGGTATAGTAAGCAGCAATTCAACAATAGTATCGACTGGTTCATGGCCAAGAATGGAAATGATGAGATCAAGAGAAGATGATGAACGGTTAGTGGAGAGCCAATATTTTCCAACGCCTGTTCCATATCGCTTAGTTAgagataaaattgtaaatataaaacaagaagAATTCTTTAATACAACAATCAAAGAAAATTTTCAACGTCATTTAAACTTACACAATTCTCAAATGCTGTCCAGACAGCAATCAAATAATCATTCGATTATTCCAGATAATTCAATAACAAACAACTTTAGCCCTGTTCTAAATATTAAGCAAGAACCAGAATCGAGTACAACTCTCgagaaaataaatagttcaGATGAAATAAATTTAGCAAACAGAAATGAATCGATTGTATCGACAGCTTCACATAACTCAATGACAAACAATTACCTTGCCTTGAATATAAAGCAAGAAAAAAACTTGTGTGAAAATTCTAGGGAAAGGAACAGTTCAGATCAAATGGATGCAGTGAACAGAAATGAATCAACTTTGGCAAATGAATCTCGTGGATTAATGGCAGAACGAAACCCTATAAATGttgcaaacaataatattgtacctacagtTAGAGAAACTGCTTATTTCTGTATTAGAAGATtgcctaatattaaaaatgaattttgcaATGGTGATTATAATCAGATATCACaagacaattttatatttatatgtagaaTTTGTAAAAATTCTCCATCTACAGATATACATTCATTTGCATTACACATGAGTGATCACAGTGAATGTAATATGCATGAATGTATTGTGTGTGATAAAACATTTAACTCTGTAGTTCTTTGGACAGATCATATGACTTATCATCAACAGCAAATAGATAGTAATGTGTCAACCGTTCAGTTTAATTCTCTAGAAACTGAATCTAATACATCAGACTCTATTAATTCTGGAAACATAGAACCTCAAGTTAGTAAAAACTTAAGAAATCGAAAATCTAAGATATCCTCATTGGATGATTCATGTTCAGATACATCAAGTTTAAATagtgtcaaaaaaaataaaaataaacatagctGTAGTACAAGTAAAAAAGCATTTCCTTCCAAGACTGCATTACAGGTTCATCAAACTCTCCAGAATAAATCACAAACATTTTCCTGTAGgttttgtgataaaatattttctagtaaAGGTCCATGTACAAATCATGAAAAATCTCACATCAACTCAAACAAACAGTtgctacaaaataataagaatattaagcTTGAACCGATCCAAAACAACATAAGTATAGAAGATAACACTAATTCCGAGtcaatatcaataaaacataaaaaaaagaatttctGTTATTTATGTAGTAAGAAATTTTCAAAACGTTGTTATTTTACAAATCATATGATGATAAAGCATAATGTGAATTCAAACACACCAGAACAATTAACAACGATTGATTGTAACGAATCAATCATTCTATCAAAAAATTTAGTGTTAACTAATGAATATGAACACAAATTATCAGTTCCagcaaataataatgttaagaaAATCAATGAGAAGAAATCAACAGTTTGCATGTTCTGCAAACAAAATTTTGCACATCTTGGTGCCTTAACCAATCACATGCGTGTTCATAGTTTTAAaccatataaatgtaaatattgtaacatgCAATTTGGTAGTAAAAGATCTTACATTAAGcatgaaaaaaaacatgaatcaaaaaatatagttgAAAGCACGCCTaatcaaatcaaaaacaatatagttGTTGAAGTTAATGATGAACCACCAATTGAACATTGTAATGATTTTGAGCTTGTTCATAGTCCAGTTGATGGAAATTCAAGTGGTACAAATTTGATAAACATAGAACATTTATGGTTTTCCTGTGATGTGTGTGAGGAAAAATTCTCTACTCCAATTCAATTGAATTTTCACCGTAAGTTACATTCTGAAATTGTCCCATATGtatgtaaaatttgtaatagATCTTTTCAGTTTAAATTTCGATGGAATTGGCATTTAAAAgaacattacaaaaaatacaacgcaaatttaaaaagtaagcAGCATACTAATAATCTAAAATCAAACATTAGTAAGCTAAAGGTTGAATCTATTCGTCCAAGAGATATAATGAGATGTCGATATTGTAAAAAAGAATATAACTCGTTATCTCAGTGGAAAAAACATATAACAATGAGCAAGGAATGTCGTCGYCATTGTAAAAGTAACCTTCCAGAGTTTACATCAAATAAATCTTCCAAATCTGGTCGATACAGATGTAACATATGTAATAAAACATACAGTACCTCTTACAATCGAtcagtacataaaaaaaatgttcataacgaGGTGTTAGACACAACCGATTTGAATACTTATGACAATAACAGttcacaaaaaaacaaattattggaCATTATTCAACAAAAACCATTGATTACTAAACGAAACAGAAGTAATCACATTAATGGTTCTAAATGTGGATTTTGTGGGAAAATGTACAGTAGTGGAGCTAATTTAAGTCGCCACATAGCCATAATTCACACACAAACTTATGAGCCTGTGACCTGTAATGTTTGTGGAAGTAcatttaaacacaaattttcttACAGagaacatttaaaaactaaacacaAACAACTattcaaacattataaacaaacaCACCCTAGAAAGAAAAGAACCAACCGGGAAACTATgtcagtaattaaaaataataccattatacACTTttgcaaaatatgtaaaatgaaGTTTGCTGACAATATTTCATTACAAGAACATTCaaagatacatattttaaatatgtataagtgtAAAGACTGTGGTCAACAGTTTGAGACAAATGTTACTCTAGGTAATCATATTTTAGAAAACCATAATGCCAATATTTCTACATCTTATAAAAATGTCCAGAACCATGAGAACCAAAATGCTTCTCTAGAAATAATTGACTATAATCTTACTCAGTGTAAAATTTGTTCGAAAATCTTGAAAACccagaaatatttgaaattacataTGAGATTACACACTGGTGTCAAACCATTCAAATGTGACAAGTGTAACGCTGCTTTCAGATTTAAATCAAACTTTAAAGTGCATCAGAAGAAAAATTCTTGTCGTAtcccataa
- Protein Sequence
- ITPMEDYIKVEVTDDSDAVTSQLYVENTNENPAWYTVDDNHVSLVSENVEKVIKLETDVLDDCMWESRIDIEDNNTDLNEENTSDKIFHCNICGKSFVLNYLLKNHLAEHKKHVNYKNNKCKYCGKLFKLKFGLNRHIQKHHNLVYKCGICKLFIDKSKFVEHKKSHENDQTKFDTIPNIKLCKLNGVWKSKTNEFKCNICFQKCYSEKNLVEHVETHDNCQTQCKYCSDYVSVSEMNNHLEEIHDKHLFKCQKCNQKFKKQQHLNCHLIHCLKSSHTKYNNEKTCSACGIVFNSTLSLLNHTIIGCKHYTCKYCGQFFSQRNCWLKHMDVHKKVEQSAMLNVNTETNSTIGESNQTEDVNDFFHSSNRRLFYCDVAERNISDHIRLVNTNPTIVATASHTYIPNNDIISNXGQTEILLNSSERNISDQTGIVSSNSTIVSTGSWPRMEMMRSREDDERLVESQYFPTPVPYRLVRDKIVNIKQEEFFNTTIKENFQRHLNLHNSQMLSRQQSNNHSIIPDNSITNNFSPVLNIKQEPESSTTLEKINSSDEINLANRNESIVSTASHNSMTNNYLALNIKQEKNLCENSRERNSSDQMDAVNRNESTLANESRGLMAERNPINVANNNIVPTVRETAYFCIRRLPNIKNEFCNGDYNQISQDNFIFICRICKNSPSTDIHSFALHMSDHSECNMHECIVCDKTFNSVVLWTDHMTYHQQQIDSNVSTVQFNSLETESNTSDSINSGNIEPQVSKNLRNRKSKISSLDDSCSDTSSLNSVKKNKNKHSCSTSKKAFPSKTALQVHQTLQNKSQTFSCRFCDKIFSSKGPCTNHEKSHINSNKQLLQNNKNIKLEPIQNNISIEDNTNSESISIKHKKKNFCYLCSKKFSKRCYFTNHMMIKHNVNSNTPEQLTTIDCNESIILSKNLVLTNEYEHKLSVPANNNVKKINEKKSTVCMFCKQNFAHLGALTNHMRVHSFKPYKCKYCNMQFGSKRSYIKHEKKHESKNIVESTPNQIKNNIVVEVNDEPPIEHCNDFELVHSPVDGNSSGTNLINIEHLWFSCDVCEEKFSTPIQLNFHRKLHSEIVPYVCKICNRSFQFKFRWNWHLKEHYKKYNANLKSKQHTNNLKSNISKLKVESIRPRDIMRCRYCKKEYNSLSQWKKHITMSKECRRHCKSNLPEFTSNKSSKSGRYRCNICNKTYSTSYNRSVHKKNVHNEVLDTTDLNTYDNNSSQKNKLLDIIQQKPLITKRNRSNHINGSKCGFCGKMYSSGANLSRHIAIIHTQTYEPVTCNVCGSTFKHKFSYREHLKTKHKQLFKHYKQTHPRKKRTNRETMSVIKNNTIIHFCKICKMKFADNISLQEHSKIHILNMYKCKDCGQQFETNVTLGNHILENHNANISTSYKNVQNHENQNASLEIIDYNLTQCKICSKILKTQKYLKLHMRLHTGVKPFKCDKCNAAFRFKSNFKVHQKKNSCRIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -